Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0774

Experiment: Neomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0773 and Psest_0774 are separated by 13 nucleotidesPsest_0774 and Psest_0775 are separated by 290 nucleotides Psest_0773: Psest_0773 - Cytosine deaminase and related metal-dependent hydrolases, at 841,365 to 842,600 _0773 Psest_0774: Psest_0774 - cytosine permease (from data), at 842,614 to 843,891 _0774 Psest_0775: Psest_0775 - Catalase, at 844,182 to 845,720 _0775 Position (kb) 842 843 844Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 841.755 kb on - strand, within Psest_0773at 841.858 kb on + strand, within Psest_0773at 841.858 kb on + strand, within Psest_0773at 841.859 kb on - strand, within Psest_0773at 841.859 kb on - strand, within Psest_0773at 841.903 kb on - strand, within Psest_0773at 842.217 kb on - strand, within Psest_0773at 842.454 kb on + strand, within Psest_0773at 842.457 kb on + strand, within Psest_0773at 842.457 kb on + strand, within Psest_0773at 842.682 kb on + strandat 842.683 kb on - strandat 842.683 kb on - strandat 842.683 kb on - strandat 842.683 kb on - strandat 842.683 kb on - strandat 842.683 kb on - strandat 842.683 kb on - strandat 842.684 kb on + strandat 842.685 kb on - strandat 842.685 kb on - strandat 842.685 kb on - strandat 842.685 kb on - strandat 842.685 kb on - strandat 842.685 kb on - strandat 842.685 kb on - strandat 842.685 kb on - strandat 842.685 kb on - strandat 842.685 kb on - strandat 842.685 kb on - strandat 842.705 kb on - strandat 842.738 kb on + strandat 842.738 kb on + strandat 842.762 kb on + strand, within Psest_0774at 842.762 kb on + strand, within Psest_0774at 842.786 kb on + strand, within Psest_0774at 842.787 kb on - strand, within Psest_0774at 842.787 kb on - strand, within Psest_0774at 842.787 kb on - strand, within Psest_0774at 842.843 kb on + strand, within Psest_0774at 842.843 kb on + strand, within Psest_0774at 842.843 kb on + strand, within Psest_0774at 842.843 kb on + strand, within Psest_0774at 842.858 kb on - strand, within Psest_0774at 842.918 kb on + strand, within Psest_0774at 842.918 kb on + strand, within Psest_0774at 842.918 kb on + strand, within Psest_0774at 842.918 kb on + strand, within Psest_0774at 842.918 kb on + strand, within Psest_0774at 842.918 kb on + strand, within Psest_0774at 842.918 kb on + strand, within Psest_0774at 842.919 kb on - strand, within Psest_0774at 842.919 kb on - strand, within Psest_0774at 842.919 kb on - strand, within Psest_0774at 842.919 kb on - strand, within Psest_0774at 843.023 kb on + strand, within Psest_0774at 843.023 kb on + strand, within Psest_0774at 843.023 kb on + strand, within Psest_0774at 843.024 kb on - strand, within Psest_0774at 843.024 kb on - strand, within Psest_0774at 843.385 kb on + strand, within Psest_0774at 843.385 kb on + strand, within Psest_0774at 843.560 kb on + strand, within Psest_0774at 843.568 kb on + strand, within Psest_0774at 843.568 kb on + strand, within Psest_0774at 843.569 kb on - strand, within Psest_0774at 843.689 kb on + strand, within Psest_0774at 843.689 kb on + strand, within Psest_0774at 843.689 kb on + strand, within Psest_0774at 843.690 kb on - strand, within Psest_0774at 843.690 kb on - strand, within Psest_0774at 843.690 kb on - strand, within Psest_0774at 843.867 kb on - strandat 844.019 kb on + strandat 844.020 kb on - strandat 844.046 kb on - strandat 844.046 kb on - strandat 844.130 kb on + strandat 844.130 kb on + strandat 844.131 kb on - strandat 844.131 kb on - strandat 844.232 kb on + strandat 844.233 kb on - strandat 844.233 kb on - strandat 844.233 kb on - strandat 844.233 kb on - strandat 844.233 kb on - strandat 844.602 kb on + strand, within Psest_0775at 844.603 kb on - strand, within Psest_0775at 844.603 kb on - strand, within Psest_0775at 844.603 kb on - strand, within Psest_0775at 844.791 kb on + strand, within Psest_0775at 844.791 kb on + strand, within Psest_0775at 844.791 kb on + strand, within Psest_0775at 844.791 kb on + strand, within Psest_0775at 844.792 kb on - strand, within Psest_0775at 844.792 kb on - strand, within Psest_0775at 844.792 kb on - strand, within Psest_0775at 844.792 kb on - strand, within Psest_0775at 844.792 kb on - strand, within Psest_0775at 844.792 kb on - strand, within Psest_0775at 844.792 kb on - strand, within Psest_0775at 844.852 kb on - strand, within Psest_0775at 844.852 kb on - strand, within Psest_0775at 844.852 kb on - strand, within Psest_0775at 844.884 kb on + strand, within Psest_0775at 844.884 kb on + strand, within Psest_0775at 844.885 kb on - strand, within Psest_0775at 844.885 kb on - strand, within Psest_0775at 844.885 kb on - strand, within Psest_0775

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Per-strain Table

Position Strand Gene LocusTag Fraction Neomycin 0.004 mg/ml
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841,755 - Psest_0773 0.32 +0.8
841,858 + Psest_0773 0.40 +0.7
841,858 + Psest_0773 0.40 -1.2
841,859 - Psest_0773 0.40 -1.3
841,859 - Psest_0773 0.40 -0.5
841,903 - Psest_0773 0.44 -1.2
842,217 - Psest_0773 0.69 -1.4
842,454 + Psest_0773 0.88 +0.0
842,457 + Psest_0773 0.88 -3.4
842,457 + Psest_0773 0.88 +0.2
842,682 + -0.4
842,683 - +0.5
842,683 - -1.0
842,683 - -2.8
842,683 - +0.2
842,683 - -1.8
842,683 - -2.2
842,683 - +0.2
842,684 + +0.5
842,685 - -1.4
842,685 - -0.0
842,685 - -0.9
842,685 - -2.1
842,685 - +0.6
842,685 - -0.7
842,685 - -1.2
842,685 - -1.2
842,685 - -1.2
842,685 - -2.7
842,685 - +0.1
842,705 - -1.3
842,738 + +0.1
842,738 + +1.4
842,762 + Psest_0774 0.12 -1.1
842,762 + Psest_0774 0.12 -0.4
842,786 + Psest_0774 0.13 -0.2
842,787 - Psest_0774 0.14 +0.2
842,787 - Psest_0774 0.14 +0.9
842,787 - Psest_0774 0.14 -0.1
842,843 + Psest_0774 0.18 -1.2
842,843 + Psest_0774 0.18 -0.6
842,843 + Psest_0774 0.18 -1.1
842,843 + Psest_0774 0.18 +0.2
842,858 - Psest_0774 0.19 -1.3
842,918 + Psest_0774 0.24 -0.2
842,918 + Psest_0774 0.24 +0.5
842,918 + Psest_0774 0.24 -2.4
842,918 + Psest_0774 0.24 +0.4
842,918 + Psest_0774 0.24 -0.1
842,918 + Psest_0774 0.24 -0.1
842,918 + Psest_0774 0.24 -1.0
842,919 - Psest_0774 0.24 -0.4
842,919 - Psest_0774 0.24 -1.0
842,919 - Psest_0774 0.24 -0.0
842,919 - Psest_0774 0.24 -2.0
843,023 + Psest_0774 0.32 +1.0
843,023 + Psest_0774 0.32 -0.2
843,023 + Psest_0774 0.32 -0.6
843,024 - Psest_0774 0.32 -1.9
843,024 - Psest_0774 0.32 +0.4
843,385 + Psest_0774 0.60 -2.0
843,385 + Psest_0774 0.60 +0.5
843,560 + Psest_0774 0.74 +0.9
843,568 + Psest_0774 0.75 +1.6
843,568 + Psest_0774 0.75 +0.3
843,569 - Psest_0774 0.75 -0.5
843,689 + Psest_0774 0.84 -0.4
843,689 + Psest_0774 0.84 +0.6
843,689 + Psest_0774 0.84 +0.1
843,690 - Psest_0774 0.84 -2.1
843,690 - Psest_0774 0.84 -1.5
843,690 - Psest_0774 0.84 +0.3
843,867 - -0.6
844,019 + -1.1
844,020 - +0.1
844,046 - -1.4
844,046 - -2.3
844,130 + -0.3
844,130 + +1.0
844,131 - +1.1
844,131 - +0.8
844,232 + -1.7
844,233 - +2.2
844,233 - +0.8
844,233 - -1.1
844,233 - -0.0
844,233 - +0.2
844,602 + Psest_0775 0.27 +0.4
844,603 - Psest_0775 0.27 +1.8
844,603 - Psest_0775 0.27 -0.1
844,603 - Psest_0775 0.27 +1.0
844,791 + Psest_0775 0.40 +0.0
844,791 + Psest_0775 0.40 -1.3
844,791 + Psest_0775 0.40 -0.0
844,791 + Psest_0775 0.40 -0.4
844,792 - Psest_0775 0.40 -0.0
844,792 - Psest_0775 0.40 -0.4
844,792 - Psest_0775 0.40 -0.7
844,792 - Psest_0775 0.40 -0.1
844,792 - Psest_0775 0.40 -0.7
844,792 - Psest_0775 0.40 -0.1
844,792 - Psest_0775 0.40 -0.2
844,852 - Psest_0775 0.44 +2.2
844,852 - Psest_0775 0.44 +2.4
844,852 - Psest_0775 0.44 -1.9
844,884 + Psest_0775 0.46 -0.1
844,884 + Psest_0775 0.46 -1.3
844,885 - Psest_0775 0.46 +0.3
844,885 - Psest_0775 0.46 +0.6
844,885 - Psest_0775 0.46 -0.1

Or see this region's nucleotide sequence