Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0731

Experiment: Neomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0730 and Psest_0731 are separated by 157 nucleotidesPsest_0731 and Psest_0732 are separated by 154 nucleotides Psest_0730: Psest_0730 - O-6-methylguanine DNA methyltransferase, at 799,537 to 800,577 _0730 Psest_0731: Psest_0731 - Serine/threonine protein kinase involved in cell cycle control, at 800,735 to 801,625 _0731 Psest_0732: Psest_0732 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 801,780 to 803,252 _0732 Position (kb) 800 801 802Strain fitness (log2 ratio) -2 -1 0 1 2at 799.971 kb on + strand, within Psest_0730at 799.971 kb on + strand, within Psest_0730at 799.971 kb on + strand, within Psest_0730at 799.971 kb on + strand, within Psest_0730at 799.971 kb on + strand, within Psest_0730at 799.972 kb on - strand, within Psest_0730at 799.972 kb on - strand, within Psest_0730at 800.429 kb on + strand, within Psest_0730at 800.429 kb on + strand, within Psest_0730at 800.430 kb on - strand, within Psest_0730at 800.430 kb on - strand, within Psest_0730at 800.430 kb on - strand, within Psest_0730at 800.430 kb on - strand, within Psest_0730at 800.430 kb on - strand, within Psest_0730at 800.654 kb on + strandat 800.654 kb on + strandat 800.654 kb on + strandat 800.655 kb on - strandat 800.655 kb on - strandat 800.655 kb on - strandat 800.655 kb on - strandat 800.747 kb on - strandat 800.826 kb on + strand, within Psest_0731at 800.826 kb on + strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.870 kb on + strand, within Psest_0731at 800.871 kb on - strand, within Psest_0731at 800.871 kb on - strand, within Psest_0731at 800.871 kb on - strand, within Psest_0731at 800.871 kb on - strand, within Psest_0731at 800.912 kb on + strand, within Psest_0731at 800.938 kb on + strand, within Psest_0731at 800.939 kb on - strand, within Psest_0731at 800.939 kb on - strand, within Psest_0731at 801.240 kb on + strand, within Psest_0731at 801.240 kb on + strand, within Psest_0731at 801.368 kb on + strand, within Psest_0731at 801.369 kb on - strand, within Psest_0731at 801.689 kb on + strandat 801.690 kb on - strandat 801.856 kb on + strandat 801.856 kb on + strandat 801.857 kb on - strandat 801.857 kb on - strandat 801.857 kb on - strandat 801.857 kb on - strandat 801.857 kb on - strandat 801.857 kb on - strandat 801.857 kb on - strandat 801.857 kb on - strandat 802.120 kb on + strand, within Psest_0732at 802.121 kb on - strand, within Psest_0732at 802.121 kb on - strand, within Psest_0732at 802.121 kb on - strand, within Psest_0732

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Per-strain Table

Position Strand Gene LocusTag Fraction Neomycin 0.004 mg/ml
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799,971 + Psest_0730 0.42 -1.0
799,971 + Psest_0730 0.42 -1.1
799,971 + Psest_0730 0.42 -0.4
799,971 + Psest_0730 0.42 -1.2
799,971 + Psest_0730 0.42 +0.8
799,972 - Psest_0730 0.42 -0.0
799,972 - Psest_0730 0.42 +2.4
800,429 + Psest_0730 0.86 -0.3
800,429 + Psest_0730 0.86 -1.1
800,430 - Psest_0730 0.86 +0.5
800,430 - Psest_0730 0.86 +0.4
800,430 - Psest_0730 0.86 +0.3
800,430 - Psest_0730 0.86 +1.4
800,430 - Psest_0730 0.86 +1.1
800,654 + -1.0
800,654 + -1.9
800,654 + -0.2
800,655 - -0.2
800,655 - -2.2
800,655 - -0.4
800,655 - +0.6
800,747 - -2.4
800,826 + Psest_0731 0.10 +0.5
800,826 + Psest_0731 0.10 +1.1
800,827 - Psest_0731 0.10 -0.5
800,827 - Psest_0731 0.10 +1.1
800,827 - Psest_0731 0.10 +0.2
800,827 - Psest_0731 0.10 +1.3
800,827 - Psest_0731 0.10 +0.5
800,827 - Psest_0731 0.10 -0.8
800,827 - Psest_0731 0.10 +0.9
800,827 - Psest_0731 0.10 +1.0
800,827 - Psest_0731 0.10 -0.2
800,828 + Psest_0731 0.10 -0.8
800,828 + Psest_0731 0.10 +0.1
800,828 + Psest_0731 0.10 -0.8
800,828 + Psest_0731 0.10 +0.2
800,828 + Psest_0731 0.10 -0.2
800,828 + Psest_0731 0.10 +1.4
800,828 + Psest_0731 0.10 +0.5
800,828 + Psest_0731 0.10 +0.6
800,828 + Psest_0731 0.10 -1.5
800,828 + Psest_0731 0.10 +0.0
800,828 + Psest_0731 0.10 -0.3
800,828 + Psest_0731 0.10 +0.7
800,828 + Psest_0731 0.10 +1.2
800,828 + Psest_0731 0.10 +1.8
800,828 + Psest_0731 0.10 +1.9
800,828 + Psest_0731 0.10 +0.9
800,828 + Psest_0731 0.10 -0.5
800,828 + Psest_0731 0.10 -0.5
800,828 + Psest_0731 0.10 -1.0
800,828 + Psest_0731 0.10 +0.5
800,828 + Psest_0731 0.10 -1.1
800,829 - Psest_0731 0.11 -0.3
800,829 - Psest_0731 0.11 +0.7
800,829 - Psest_0731 0.11 +1.4
800,829 - Psest_0731 0.11 -2.4
800,829 - Psest_0731 0.11 -1.1
800,829 - Psest_0731 0.11 +1.6
800,829 - Psest_0731 0.11 -1.5
800,829 - Psest_0731 0.11 +1.2
800,829 - Psest_0731 0.11 -2.7
800,829 - Psest_0731 0.11 -1.4
800,829 - Psest_0731 0.11 +0.2
800,829 - Psest_0731 0.11 -0.1
800,829 - Psest_0731 0.11 +1.0
800,829 - Psest_0731 0.11 +1.1
800,829 - Psest_0731 0.11 +0.7
800,829 - Psest_0731 0.11 -0.1
800,829 - Psest_0731 0.11 +0.8
800,829 - Psest_0731 0.11 -0.9
800,829 - Psest_0731 0.11 +1.7
800,829 - Psest_0731 0.11 +0.9
800,829 - Psest_0731 0.11 +0.9
800,829 - Psest_0731 0.11 -0.2
800,870 + Psest_0731 0.15 +1.2
800,871 - Psest_0731 0.15 -0.1
800,871 - Psest_0731 0.15 +2.5
800,871 - Psest_0731 0.15 +1.0
800,871 - Psest_0731 0.15 -0.3
800,912 + Psest_0731 0.20 +0.4
800,938 + Psest_0731 0.23 +0.5
800,939 - Psest_0731 0.23 +1.3
800,939 - Psest_0731 0.23 +0.7
801,240 + Psest_0731 0.57 +1.1
801,240 + Psest_0731 0.57 +0.9
801,368 + Psest_0731 0.71 +0.0
801,369 - Psest_0731 0.71 +1.0
801,689 + +0.2
801,690 - +0.3
801,856 + +0.9
801,856 + -0.3
801,857 - +0.3
801,857 - -0.4
801,857 - -0.2
801,857 - +0.8
801,857 - -1.6
801,857 - -0.0
801,857 - -0.2
801,857 - +1.5
802,120 + Psest_0732 0.23 +0.0
802,121 - Psest_0732 0.23 -0.7
802,121 - Psest_0732 0.23 -0.8
802,121 - Psest_0732 0.23 -0.1

Or see this region's nucleotide sequence