Experiment: Neomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0490 and Psest_0491 are separated by 139 nucleotides Psest_0491 and Psest_0492 are separated by 61 nucleotides
Psest_0490: Psest_0490 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 542,287 to 543,360
_0490
Psest_0491: Psest_0491 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 543,500 to 545,566
_0491
Psest_0492: Psest_0492 - hypothetical protein, at 545,628 to 547,469
_0492
Position (kb) 543
544
545
546 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 542.531 kb on + strand, within Psest_0490 at 542.665 kb on + strand, within Psest_0490 at 542.665 kb on + strand, within Psest_0490 at 542.665 kb on + strand, within Psest_0490 at 542.666 kb on - strand, within Psest_0490 at 542.666 kb on - strand, within Psest_0490 at 542.666 kb on - strand, within Psest_0490 at 542.666 kb on - strand, within Psest_0490 at 542.666 kb on - strand, within Psest_0490 at 542.666 kb on - strand, within Psest_0490 at 542.966 kb on + strand, within Psest_0490 at 542.966 kb on + strand, within Psest_0490 at 542.967 kb on - strand, within Psest_0490 at 542.967 kb on - strand, within Psest_0490 at 542.967 kb on - strand, within Psest_0490 at 542.967 kb on - strand, within Psest_0490 at 542.967 kb on - strand, within Psest_0490 at 543.077 kb on + strand, within Psest_0490 at 543.077 kb on + strand, within Psest_0490 at 543.078 kb on - strand, within Psest_0490 at 543.331 kb on + strand at 543.400 kb on + strand at 543.401 kb on - strand at 543.501 kb on + strand at 543.501 kb on + strand at 543.502 kb on - strand at 543.502 kb on - strand at 543.502 kb on - strand at 543.556 kb on - strand at 543.570 kb on + strand at 543.570 kb on + strand at 543.570 kb on + strand at 543.570 kb on + strand at 543.571 kb on - strand at 543.571 kb on - strand at 543.571 kb on - strand at 543.571 kb on - strand at 543.571 kb on - strand at 543.571 kb on - strand at 543.714 kb on + strand, within Psest_0491 at 543.714 kb on + strand, within Psest_0491 at 543.760 kb on + strand, within Psest_0491 at 544.293 kb on + strand, within Psest_0491 at 544.293 kb on + strand, within Psest_0491 at 544.293 kb on + strand, within Psest_0491 at 544.293 kb on + strand, within Psest_0491 at 544.294 kb on - strand, within Psest_0491 at 544.294 kb on - strand, within Psest_0491 at 544.294 kb on - strand, within Psest_0491 at 544.294 kb on - strand, within Psest_0491 at 544.515 kb on - strand, within Psest_0491 at 544.622 kb on + strand, within Psest_0491 at 544.622 kb on + strand, within Psest_0491 at 544.622 kb on + strand, within Psest_0491 at 544.623 kb on - strand, within Psest_0491 at 544.662 kb on + strand, within Psest_0491 at 544.662 kb on + strand, within Psest_0491 at 544.662 kb on + strand, within Psest_0491 at 544.663 kb on - strand, within Psest_0491 at 544.944 kb on + strand, within Psest_0491 at 544.944 kb on + strand, within Psest_0491 at 544.944 kb on + strand, within Psest_0491 at 544.945 kb on - strand, within Psest_0491 at 544.945 kb on - strand, within Psest_0491 at 544.945 kb on - strand, within Psest_0491 at 545.052 kb on + strand, within Psest_0491 at 545.053 kb on - strand, within Psest_0491 at 545.067 kb on + strand, within Psest_0491 at 545.068 kb on - strand, within Psest_0491 at 545.068 kb on - strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.072 kb on - strand, within Psest_0491 at 545.072 kb on - strand, within Psest_0491 at 545.072 kb on - strand, within Psest_0491 at 545.072 kb on - strand, within Psest_0491 at 545.072 kb on - strand, within Psest_0491 at 545.072 kb on - strand, within Psest_0491 at 545.072 kb on - strand, within Psest_0491 at 545.072 kb on - strand, within Psest_0491 at 545.072 kb on - strand, within Psest_0491 at 545.072 kb on - strand, within Psest_0491 at 545.072 kb on - strand, within Psest_0491 at 545.072 kb on - strand, within Psest_0491 at 545.077 kb on + strand, within Psest_0491 at 545.091 kb on + strand, within Psest_0491 at 545.092 kb on - strand, within Psest_0491 at 545.577 kb on + strand at 545.577 kb on + strand at 545.577 kb on + strand at 545.577 kb on + strand at 545.577 kb on + strand at 545.577 kb on + strand at 545.577 kb on + strand at 545.577 kb on + strand at 545.577 kb on + strand at 545.577 kb on + strand at 545.577 kb on + strand at 545.578 kb on - strand at 545.578 kb on - strand at 545.578 kb on - strand at 545.578 kb on - strand at 545.578 kb on - strand at 545.578 kb on - strand at 545.578 kb on - strand at 545.578 kb on - strand at 545.629 kb on + strand at 545.629 kb on + strand at 545.630 kb on - strand at 545.630 kb on - strand at 545.630 kb on - strand at 545.752 kb on + strand at 545.752 kb on + strand at 545.752 kb on + strand at 545.752 kb on + strand at 545.752 kb on + strand at 545.752 kb on + strand at 545.752 kb on + strand at 545.753 kb on - strand at 545.753 kb on - strand at 545.753 kb on - strand at 546.093 kb on + strand, within Psest_0492 at 546.093 kb on + strand, within Psest_0492 at 546.094 kb on - strand, within Psest_0492 at 546.094 kb on - strand, within Psest_0492 at 546.094 kb on - strand, within Psest_0492 at 546.105 kb on + strand, within Psest_0492 at 546.105 kb on + strand, within Psest_0492 at 546.106 kb on - strand, within Psest_0492 at 546.166 kb on + strand, within Psest_0492 at 546.166 kb on + strand, within Psest_0492 at 546.166 kb on + strand, within Psest_0492 at 546.167 kb on - strand, within Psest_0492 at 546.167 kb on - strand, within Psest_0492 at 546.192 kb on - strand, within Psest_0492 at 546.434 kb on - strand, within Psest_0492 at 546.456 kb on - strand, within Psest_0492
Per-strain Table
Position Strand Gene LocusTag Fraction Neomycin 0.004 mg/ml remove 542,531 + Psest_0490 0.23 +0.9 542,665 + Psest_0490 0.35 -0.4 542,665 + Psest_0490 0.35 +1.2 542,665 + Psest_0490 0.35 +0.8 542,666 - Psest_0490 0.35 +0.7 542,666 - Psest_0490 0.35 -1.6 542,666 - Psest_0490 0.35 +0.6 542,666 - Psest_0490 0.35 +1.6 542,666 - Psest_0490 0.35 +1.5 542,666 - Psest_0490 0.35 +0.9 542,966 + Psest_0490 0.63 +0.2 542,966 + Psest_0490 0.63 -2.4 542,967 - Psest_0490 0.63 -0.0 542,967 - Psest_0490 0.63 +1.9 542,967 - Psest_0490 0.63 -0.1 542,967 - Psest_0490 0.63 +1.5 542,967 - Psest_0490 0.63 -0.2 543,077 + Psest_0490 0.74 -1.5 543,077 + Psest_0490 0.74 -2.0 543,078 - Psest_0490 0.74 +0.6 543,331 + +1.2 543,400 + +0.3 543,401 - +1.6 543,501 + -0.5 543,501 + +0.1 543,502 - -0.0 543,502 - +0.9 543,502 - +0.5 543,556 - +0.9 543,570 + -1.0 543,570 + -1.9 543,570 + -0.8 543,570 + -2.4 543,571 - -1.5 543,571 - -0.5 543,571 - -1.3 543,571 - -0.4 543,571 - -1.5 543,571 - -1.2 543,714 + Psest_0491 0.10 -2.5 543,714 + Psest_0491 0.10 -1.3 543,760 + Psest_0491 0.13 -0.7 544,293 + Psest_0491 0.38 -1.8 544,293 + Psest_0491 0.38 -2.0 544,293 + Psest_0491 0.38 -1.8 544,293 + Psest_0491 0.38 +0.7 544,294 - Psest_0491 0.38 -3.4 544,294 - Psest_0491 0.38 +0.4 544,294 - Psest_0491 0.38 -2.7 544,294 - Psest_0491 0.38 -0.6 544,515 - Psest_0491 0.49 -0.6 544,622 + Psest_0491 0.54 -2.0 544,622 + Psest_0491 0.54 -0.0 544,622 + Psest_0491 0.54 -3.0 544,623 - Psest_0491 0.54 -3.0 544,662 + Psest_0491 0.56 -1.1 544,662 + Psest_0491 0.56 +1.3 544,662 + Psest_0491 0.56 -0.6 544,663 - Psest_0491 0.56 -1.3 544,944 + Psest_0491 0.70 -0.0 544,944 + Psest_0491 0.70 -2.8 544,944 + Psest_0491 0.70 -0.5 544,945 - Psest_0491 0.70 -0.2 544,945 - Psest_0491 0.70 -1.0 544,945 - Psest_0491 0.70 -1.5 545,052 + Psest_0491 0.75 +0.7 545,053 - Psest_0491 0.75 -1.2 545,067 + Psest_0491 0.76 -2.5 545,068 - Psest_0491 0.76 +0.3 545,068 - Psest_0491 0.76 -0.5 545,071 + Psest_0491 0.76 -0.2 545,071 + Psest_0491 0.76 -0.8 545,071 + Psest_0491 0.76 +0.8 545,071 + Psest_0491 0.76 -1.3 545,071 + Psest_0491 0.76 -0.7 545,071 + Psest_0491 0.76 -0.4 545,071 + Psest_0491 0.76 -1.6 545,071 + Psest_0491 0.76 -2.2 545,071 + Psest_0491 0.76 -1.0 545,071 + Psest_0491 0.76 -1.1 545,071 + Psest_0491 0.76 -1.4 545,071 + Psest_0491 0.76 -0.7 545,071 + Psest_0491 0.76 -2.4 545,071 + Psest_0491 0.76 -0.4 545,071 + Psest_0491 0.76 -0.7 545,071 + Psest_0491 0.76 -1.2 545,071 + Psest_0491 0.76 -0.6 545,071 + Psest_0491 0.76 -1.5 545,071 + Psest_0491 0.76 -1.8 545,072 - Psest_0491 0.76 -0.7 545,072 - Psest_0491 0.76 -2.3 545,072 - Psest_0491 0.76 -1.2 545,072 - Psest_0491 0.76 -0.2 545,072 - Psest_0491 0.76 -1.1 545,072 - Psest_0491 0.76 -1.0 545,072 - Psest_0491 0.76 -1.7 545,072 - Psest_0491 0.76 -2.4 545,072 - Psest_0491 0.76 -1.3 545,072 - Psest_0491 0.76 -2.5 545,072 - Psest_0491 0.76 -1.9 545,072 - Psest_0491 0.76 +0.1 545,077 + Psest_0491 0.76 +1.9 545,091 + Psest_0491 0.77 +0.9 545,092 - Psest_0491 0.77 -0.9 545,577 + -2.8 545,577 + -0.3 545,577 + -3.6 545,577 + -0.3 545,577 + -2.3 545,577 + -0.1 545,577 + -0.1 545,577 + -2.8 545,577 + -2.6 545,577 + -0.2 545,577 + -1.8 545,578 - -0.2 545,578 - +0.7 545,578 - +1.4 545,578 - +1.7 545,578 - -3.2 545,578 - -0.2 545,578 - +0.1 545,578 - -1.1 545,629 + +0.0 545,629 + -1.8 545,630 - +1.9 545,630 - +0.5 545,630 - -0.6 545,752 + +0.3 545,752 + +1.7 545,752 + -0.8 545,752 + -1.3 545,752 + -0.9 545,752 + +0.5 545,752 + -0.9 545,753 - +0.2 545,753 - +0.1 545,753 - -0.6 546,093 + Psest_0492 0.25 -0.4 546,093 + Psest_0492 0.25 -0.4 546,094 - Psest_0492 0.25 +0.7 546,094 - Psest_0492 0.25 +1.1 546,094 - Psest_0492 0.25 -0.1 546,105 + Psest_0492 0.26 +0.2 546,105 + Psest_0492 0.26 -0.4 546,106 - Psest_0492 0.26 -1.0 546,166 + Psest_0492 0.29 -0.2 546,166 + Psest_0492 0.29 -0.2 546,166 + Psest_0492 0.29 -0.5 546,167 - Psest_0492 0.29 -0.7 546,167 - Psest_0492 0.29 +0.3 546,192 - Psest_0492 0.31 +1.0 546,434 - Psest_0492 0.44 -1.1 546,456 - Psest_0492 0.45 +0.0
Or see this region's nucleotide sequence