Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3997

Experiment: Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Neomycin 0.004 mg/ml
4,166,701	+		Psest_3996	0.64	+2.0
4,166,702	-		Psest_3996	0.64	+1.6
4,166,921	+		Psest_3996	0.73	+0.9
4,166,922	-		Psest_3996	0.73	+1.2
4,167,004	-		Psest_3996	0.77	+1.3
4,167,542	+				-1.9
4,167,542	+				-0.0
4,167,542	+				+0.1
4,167,543	-				+0.2
4,167,543	-				-0.1
4,167,543	-				+0.8
4,167,543	-				+0.1
4,167,543	-				+0.5
4,167,543	-				+0.6
4,167,543	-				-1.2
4,167,543	-				-0.5
4,167,543	-				-1.0
4,167,543	-				+1.2
4,167,543	-				-0.1
4,167,543	-				-1.0
4,167,543	-				-0.4
4,167,543	-				-0.9
4,167,543	-				-0.9
4,167,543	-				+0.3
4,167,543	-				-1.0
4,167,793	+		Psest_3997	0.63	-1.6
4,167,793	+		Psest_3997	0.63	+0.1
4,167,793	+		Psest_3997	0.63	-2.6
4,167,793	+		Psest_3997	0.63	-0.0
4,167,793	+		Psest_3997	0.63	+1.2
4,167,793	+		Psest_3997	0.63	+0.3
4,167,793	+		Psest_3997	0.63	-0.6
4,167,794	-		Psest_3997	0.63	+1.3
4,167,794	-		Psest_3997	0.63	-2.0
4,167,794	-		Psest_3997	0.63	+0.4
4,167,794	-		Psest_3997	0.63	+0.1
4,167,794	-		Psest_3997	0.63	+0.5
4,167,794	-		Psest_3997	0.63	-0.5
4,167,794	-		Psest_3997	0.63	-0.9
4,167,794	-		Psest_3997	0.63	-0.2
4,167,794	-		Psest_3997	0.63	-0.7
4,167,794	-		Psest_3997	0.63	-0.6
4,167,794	-		Psest_3997	0.63	+0.6
4,167,794	-		Psest_3997	0.63	-1.1
4,167,794	-		Psest_3997	0.63	-0.5
4,167,794	-		Psest_3997	0.63	-1.9
4,167,794	-		Psest_3997	0.63	-1.5
4,167,794	-		Psest_3997	0.63	-2.3
4,167,881	+		Psest_3997	0.86	-1.8
4,167,881	+		Psest_3997	0.86	+0.1
4,167,881	+		Psest_3997	0.86	-0.1
4,167,881	+		Psest_3997	0.86	-1.0
4,167,882	-		Psest_3997	0.86	-0.5
4,167,882	-		Psest_3997	0.86	+0.1
4,167,882	-		Psest_3997	0.86	+1.6
4,168,323	+		Psest_3998	0.17	+0.6
4,168,323	+		Psest_3998	0.17	+2.1
4,168,324	-		Psest_3998	0.18	-0.7
4,168,444	-		Psest_3998	0.25	-1.7
4,168,503	+		Psest_3998	0.29	-1.0
4,168,503	+		Psest_3998	0.29	+0.3
4,168,593	+		Psest_3998	0.35	+2.5
4,168,594	-		Psest_3998	0.35	-0.8
4,168,641	+		Psest_3998	0.38	+0.6
4,168,642	-		Psest_3998	0.38	-0.0
4,168,642	-		Psest_3998	0.38	+2.1
4,168,642	-		Psest_3998	0.38	-0.3
4,168,642	-		Psest_3998	0.38	+0.1
4,168,806	+		Psest_3998	0.48	+1.2
4,168,807	-		Psest_3998	0.48	-2.0
4,168,824	+		Psest_3998	0.49	-0.4
4,168,825	-		Psest_3998	0.49	-0.0
4,168,825	-		Psest_3998	0.49	+2.5
4,168,825	-		Psest_3998	0.49	+0.1
4,168,860	+		Psest_3998	0.52	-2.2