Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1152

Experiment: Neomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1151 and Psest_1152 are separated by 172 nucleotidesPsest_1152 and Psest_1153 are separated by 18 nucleotides Psest_1151: Psest_1151 - chaperonin GroL, at 1,247,640 to 1,249,289 _1151 Psest_1152: Psest_1152 - hypothetical protein, at 1,249,462 to 1,249,683 _1152 Psest_1153: Psest_1153 - Cation/multidrug efflux pump, at 1,249,702 to 1,252,758 _1153 Position (kb) 1249 1250Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1249.287 kb on + strandat 1249.287 kb on + strandat 1249.310 kb on + strandat 1249.310 kb on + strandat 1249.311 kb on - strandat 1249.311 kb on - strandat 1249.311 kb on - strandat 1249.571 kb on + strand, within Psest_1152at 1249.571 kb on + strand, within Psest_1152at 1249.583 kb on - strand, within Psest_1152at 1249.583 kb on - strand, within Psest_1152at 1249.583 kb on - strand, within Psest_1152at 1249.583 kb on - strand, within Psest_1152at 1249.583 kb on - strand, within Psest_1152at 1249.763 kb on + strandat 1249.763 kb on + strandat 1249.763 kb on + strandat 1249.764 kb on - strandat 1249.764 kb on - strandat 1249.764 kb on - strandat 1249.906 kb on - strandat 1250.062 kb on - strand, within Psest_1153at 1250.063 kb on + strand, within Psest_1153at 1250.063 kb on + strand, within Psest_1153at 1250.063 kb on + strand, within Psest_1153at 1250.063 kb on + strand, within Psest_1153at 1250.063 kb on + strand, within Psest_1153at 1250.063 kb on + strand, within Psest_1153at 1250.063 kb on + strand, within Psest_1153at 1250.064 kb on - strand, within Psest_1153at 1250.064 kb on - strand, within Psest_1153at 1250.064 kb on - strand, within Psest_1153at 1250.064 kb on - strand, within Psest_1153at 1250.064 kb on - strand, within Psest_1153at 1250.064 kb on - strand, within Psest_1153at 1250.219 kb on + strand, within Psest_1153at 1250.219 kb on + strand, within Psest_1153at 1250.219 kb on + strand, within Psest_1153at 1250.219 kb on + strand, within Psest_1153at 1250.219 kb on + strand, within Psest_1153at 1250.219 kb on + strand, within Psest_1153at 1250.219 kb on + strand, within Psest_1153at 1250.219 kb on + strand, within Psest_1153at 1250.219 kb on + strand, within Psest_1153at 1250.219 kb on + strand, within Psest_1153at 1250.219 kb on + strand, within Psest_1153at 1250.219 kb on + strand, within Psest_1153at 1250.219 kb on + strand, within Psest_1153at 1250.219 kb on + strand, within Psest_1153at 1250.219 kb on + strand, within Psest_1153at 1250.219 kb on + strand, within Psest_1153at 1250.219 kb on + strand, within Psest_1153at 1250.219 kb on + strand, within Psest_1153at 1250.219 kb on + strand, within Psest_1153at 1250.219 kb on + strand, within Psest_1153at 1250.220 kb on - strand, within Psest_1153at 1250.220 kb on - strand, within Psest_1153at 1250.220 kb on - strand, within Psest_1153at 1250.220 kb on - strand, within Psest_1153at 1250.220 kb on - strand, within Psest_1153at 1250.220 kb on - strand, within Psest_1153at 1250.220 kb on - strand, within Psest_1153at 1250.220 kb on - strand, within Psest_1153at 1250.220 kb on - strand, within Psest_1153at 1250.220 kb on - strand, within Psest_1153at 1250.220 kb on - strand, within Psest_1153at 1250.220 kb on - strand, within Psest_1153at 1250.220 kb on - strand, within Psest_1153at 1250.220 kb on - strand, within Psest_1153at 1250.220 kb on - strand, within Psest_1153at 1250.220 kb on - strand, within Psest_1153at 1250.220 kb on - strand, within Psest_1153at 1250.220 kb on - strand, within Psest_1153at 1250.220 kb on - strand, within Psest_1153at 1250.220 kb on - strand, within Psest_1153at 1250.243 kb on + strand, within Psest_1153at 1250.243 kb on + strand, within Psest_1153at 1250.244 kb on - strand, within Psest_1153at 1250.244 kb on - strand, within Psest_1153at 1250.244 kb on - strand, within Psest_1153at 1250.244 kb on - strand, within Psest_1153at 1250.244 kb on - strand, within Psest_1153at 1250.317 kb on - strand, within Psest_1153at 1250.468 kb on + strand, within Psest_1153at 1250.468 kb on + strand, within Psest_1153at 1250.468 kb on + strand, within Psest_1153at 1250.468 kb on + strand, within Psest_1153at 1250.468 kb on + strand, within Psest_1153at 1250.468 kb on + strand, within Psest_1153at 1250.469 kb on - strand, within Psest_1153at 1250.469 kb on - strand, within Psest_1153at 1250.469 kb on - strand, within Psest_1153at 1250.469 kb on - strand, within Psest_1153at 1250.471 kb on + strand, within Psest_1153at 1250.471 kb on + strand, within Psest_1153at 1250.471 kb on + strand, within Psest_1153at 1250.471 kb on + strand, within Psest_1153at 1250.471 kb on + strand, within Psest_1153at 1250.472 kb on - strand, within Psest_1153at 1250.472 kb on - strand, within Psest_1153at 1250.472 kb on - strand, within Psest_1153at 1250.472 kb on - strand, within Psest_1153at 1250.472 kb on - strand, within Psest_1153at 1250.472 kb on - strand, within Psest_1153at 1250.472 kb on - strand, within Psest_1153at 1250.472 kb on - strand, within Psest_1153at 1250.501 kb on + strand, within Psest_1153at 1250.502 kb on - strand, within Psest_1153at 1250.531 kb on + strand, within Psest_1153at 1250.531 kb on + strand, within Psest_1153at 1250.531 kb on + strand, within Psest_1153at 1250.531 kb on + strand, within Psest_1153

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Per-strain Table

Position Strand Gene LocusTag Fraction Neomycin 0.004 mg/ml
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1,249,287 + +1.4
1,249,287 + +0.3
1,249,310 + +0.5
1,249,310 + +0.5
1,249,311 - +0.2
1,249,311 - -0.2
1,249,311 - -0.6
1,249,571 + Psest_1152 0.49 -2.2
1,249,571 + Psest_1152 0.49 +0.3
1,249,583 - Psest_1152 0.55 -1.6
1,249,583 - Psest_1152 0.55 -2.0
1,249,583 - Psest_1152 0.55 +0.4
1,249,583 - Psest_1152 0.55 -2.0
1,249,583 - Psest_1152 0.55 -2.0
1,249,763 + +1.9
1,249,763 + +1.6
1,249,763 + -0.2
1,249,764 - -0.6
1,249,764 - -0.8
1,249,764 - -0.7
1,249,906 - -0.4
1,250,062 - Psest_1153 0.12 -0.7
1,250,063 + Psest_1153 0.12 +1.4
1,250,063 + Psest_1153 0.12 -0.2
1,250,063 + Psest_1153 0.12 -0.4
1,250,063 + Psest_1153 0.12 -1.8
1,250,063 + Psest_1153 0.12 +0.2
1,250,063 + Psest_1153 0.12 +1.6
1,250,063 + Psest_1153 0.12 +0.0
1,250,064 - Psest_1153 0.12 -0.7
1,250,064 - Psest_1153 0.12 +0.7
1,250,064 - Psest_1153 0.12 -1.7
1,250,064 - Psest_1153 0.12 +0.8
1,250,064 - Psest_1153 0.12 +0.5
1,250,064 - Psest_1153 0.12 -0.2
1,250,219 + Psest_1153 0.17 -1.1
1,250,219 + Psest_1153 0.17 -0.1
1,250,219 + Psest_1153 0.17 +0.1
1,250,219 + Psest_1153 0.17 -1.1
1,250,219 + Psest_1153 0.17 -1.2
1,250,219 + Psest_1153 0.17 -0.1
1,250,219 + Psest_1153 0.17 -0.4
1,250,219 + Psest_1153 0.17 +0.2
1,250,219 + Psest_1153 0.17 -0.2
1,250,219 + Psest_1153 0.17 -1.7
1,250,219 + Psest_1153 0.17 +0.8
1,250,219 + Psest_1153 0.17 +2.1
1,250,219 + Psest_1153 0.17 +0.4
1,250,219 + Psest_1153 0.17 +0.7
1,250,219 + Psest_1153 0.17 -1.3
1,250,219 + Psest_1153 0.17 +0.2
1,250,219 + Psest_1153 0.17 +1.4
1,250,219 + Psest_1153 0.17 +0.4
1,250,219 + Psest_1153 0.17 +0.9
1,250,219 + Psest_1153 0.17 +1.3
1,250,220 - Psest_1153 0.17 -0.5
1,250,220 - Psest_1153 0.17 +0.1
1,250,220 - Psest_1153 0.17 +0.8
1,250,220 - Psest_1153 0.17 -0.8
1,250,220 - Psest_1153 0.17 -0.4
1,250,220 - Psest_1153 0.17 -2.4
1,250,220 - Psest_1153 0.17 +0.2
1,250,220 - Psest_1153 0.17 +0.4
1,250,220 - Psest_1153 0.17 -1.2
1,250,220 - Psest_1153 0.17 -0.7
1,250,220 - Psest_1153 0.17 +0.7
1,250,220 - Psest_1153 0.17 -0.2
1,250,220 - Psest_1153 0.17 -3.1
1,250,220 - Psest_1153 0.17 -1.3
1,250,220 - Psest_1153 0.17 +1.2
1,250,220 - Psest_1153 0.17 +0.1
1,250,220 - Psest_1153 0.17 -0.4
1,250,220 - Psest_1153 0.17 +1.4
1,250,220 - Psest_1153 0.17 -0.1
1,250,220 - Psest_1153 0.17 -0.5
1,250,243 + Psest_1153 0.18 +0.5
1,250,243 + Psest_1153 0.18 +0.0
1,250,244 - Psest_1153 0.18 -0.4
1,250,244 - Psest_1153 0.18 -0.7
1,250,244 - Psest_1153 0.18 +0.1
1,250,244 - Psest_1153 0.18 +0.6
1,250,244 - Psest_1153 0.18 +0.0
1,250,317 - Psest_1153 0.20 +2.0
1,250,468 + Psest_1153 0.25 -0.8
1,250,468 + Psest_1153 0.25 +0.1
1,250,468 + Psest_1153 0.25 +0.8
1,250,468 + Psest_1153 0.25 -1.2
1,250,468 + Psest_1153 0.25 -3.0
1,250,468 + Psest_1153 0.25 +0.2
1,250,469 - Psest_1153 0.25 +1.0
1,250,469 - Psest_1153 0.25 +0.6
1,250,469 - Psest_1153 0.25 +1.3
1,250,469 - Psest_1153 0.25 +0.2
1,250,471 + Psest_1153 0.25 -0.3
1,250,471 + Psest_1153 0.25 -1.4
1,250,471 + Psest_1153 0.25 -0.7
1,250,471 + Psest_1153 0.25 +0.5
1,250,471 + Psest_1153 0.25 +1.2
1,250,472 - Psest_1153 0.25 +1.5
1,250,472 - Psest_1153 0.25 -0.7
1,250,472 - Psest_1153 0.25 +0.1
1,250,472 - Psest_1153 0.25 -0.4
1,250,472 - Psest_1153 0.25 -0.6
1,250,472 - Psest_1153 0.25 -0.2
1,250,472 - Psest_1153 0.25 +0.6
1,250,472 - Psest_1153 0.25 -0.7
1,250,501 + Psest_1153 0.26 -0.7
1,250,502 - Psest_1153 0.26 +0.5
1,250,531 + Psest_1153 0.27 +0.7
1,250,531 + Psest_1153 0.27 +0.5
1,250,531 + Psest_1153 0.27 -0.2
1,250,531 + Psest_1153 0.27 -0.2

Or see this region's nucleotide sequence