Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0482

Experiment: D-Cycloserine 0.032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0481 and Psest_0482 are separated by 166 nucleotidesPsest_0482 and Psest_0483 are separated by 63 nucleotides Psest_0481: Psest_0481 - Predicted phosphohydrolases, at 530,851 to 531,666 _0481 Psest_0482: Psest_0482 - yqiA-like hydrolase, affects the cell envelope (from data), at 531,833 to 532,438 _0482 Psest_0483: Psest_0483 - DNA topoisomerase IV, B subunit, proteobacterial, at 532,502 to 534,481 _0483 Position (kb) 531 532 533Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 530.955 kb on + strand, within Psest_0481at 531.662 kb on - strandat 531.738 kb on + strandat 531.746 kb on + strandat 531.746 kb on + strandat 531.746 kb on + strandat 531.746 kb on + strandat 531.746 kb on + strandat 531.746 kb on + strandat 531.747 kb on - strandat 531.747 kb on - strandat 531.747 kb on - strandat 531.747 kb on - strandat 531.747 kb on - strandat 531.747 kb on - strandat 531.802 kb on + strandat 531.802 kb on + strandat 531.803 kb on - strandat 531.803 kb on - strandat 531.820 kb on - strandat 531.860 kb on + strandat 531.860 kb on + strandat 531.860 kb on + strandat 531.860 kb on + strandat 531.860 kb on + strandat 531.860 kb on + strandat 531.860 kb on + strandat 531.860 kb on + strandat 531.860 kb on + strandat 531.861 kb on - strandat 531.861 kb on - strandat 531.861 kb on - strandat 531.861 kb on - strandat 531.861 kb on - strandat 531.861 kb on - strandat 531.861 kb on - strandat 531.862 kb on + strandat 531.862 kb on + strandat 531.862 kb on + strandat 531.862 kb on + strandat 531.862 kb on + strandat 531.862 kb on + strandat 531.862 kb on + strandat 531.862 kb on + strandat 531.862 kb on + strandat 531.862 kb on + strandat 531.862 kb on + strandat 531.862 kb on + strandat 531.862 kb on - strandat 531.863 kb on - strandat 531.863 kb on - strandat 531.863 kb on - strandat 531.863 kb on - strandat 531.863 kb on - strandat 531.863 kb on - strandat 531.863 kb on - strandat 531.863 kb on - strandat 531.863 kb on - strandat 531.863 kb on - strandat 531.863 kb on - strandat 531.863 kb on - strandat 531.863 kb on - strandat 531.864 kb on + strandat 531.864 kb on + strandat 531.864 kb on + strandat 531.864 kb on + strandat 531.864 kb on + strandat 531.864 kb on + strandat 531.864 kb on + strandat 531.864 kb on + strandat 531.864 kb on + strandat 531.864 kb on + strandat 531.864 kb on + strandat 531.864 kb on + strandat 531.865 kb on - strandat 531.865 kb on - strandat 531.865 kb on - strandat 531.865 kb on - strandat 531.865 kb on - strandat 531.865 kb on - strandat 531.865 kb on - strandat 531.865 kb on - strandat 531.865 kb on - strandat 531.865 kb on - strandat 531.865 kb on - strandat 531.865 kb on - strandat 531.865 kb on - strandat 532.056 kb on - strand, within Psest_0482at 532.058 kb on + strand, within Psest_0482at 532.058 kb on + strand, within Psest_0482at 532.058 kb on + strand, within Psest_0482at 532.142 kb on + strand, within Psest_0482at 532.166 kb on + strand, within Psest_0482at 532.292 kb on + strand, within Psest_0482at 532.313 kb on + strand, within Psest_0482at 532.313 kb on + strand, within Psest_0482at 532.313 kb on + strand, within Psest_0482at 532.333 kb on + strand, within Psest_0482at 532.576 kb on + strandat 532.576 kb on + strandat 532.576 kb on + strandat 532.576 kb on + strandat 532.576 kb on + strandat 532.576 kb on + strandat 532.576 kb on + strandat 532.576 kb on + strandat 532.576 kb on + strandat 532.576 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.032 mg/ml
remove
530,955 + Psest_0481 0.13 +0.2
531,662 - -0.1
531,738 + -0.2
531,746 + -3.1
531,746 + +2.6
531,746 + +0.2
531,746 + +1.3
531,746 + -0.9
531,746 + +1.2
531,747 - -0.1
531,747 - -1.8
531,747 - +0.5
531,747 - -1.5
531,747 - +1.1
531,747 - +0.6
531,802 + -0.3
531,802 + -0.6
531,803 - -3.0
531,803 - +1.2
531,820 - +0.6
531,860 + -2.4
531,860 + -1.2
531,860 + -2.2
531,860 + -1.3
531,860 + -1.0
531,860 + +0.4
531,860 + +0.3
531,860 + -0.8
531,860 + +0.3
531,861 - +0.8
531,861 - +0.1
531,861 - +1.0
531,861 - +2.3
531,861 - +1.2
531,861 - +0.1
531,861 - -0.6
531,862 + -1.4
531,862 + -3.7
531,862 + -2.1
531,862 + -1.7
531,862 + -1.7
531,862 + +1.4
531,862 + +0.2
531,862 + +0.4
531,862 + -0.8
531,862 + +0.2
531,862 + -0.2
531,862 + -1.6
531,862 - -0.9
531,863 - -1.2
531,863 - +0.2
531,863 - +0.1
531,863 - -0.9
531,863 - -1.4
531,863 - -0.4
531,863 - -0.6
531,863 - +1.4
531,863 - +0.2
531,863 - -1.2
531,863 - -0.8
531,863 - -0.5
531,863 - -0.4
531,864 + -1.9
531,864 + -1.4
531,864 + +1.8
531,864 + -2.9
531,864 + +0.5
531,864 + -0.8
531,864 + -0.0
531,864 + +0.7
531,864 + -1.6
531,864 + +0.7
531,864 + +0.0
531,864 + -1.3
531,865 - +0.2
531,865 - -0.2
531,865 - +1.3
531,865 - -1.1
531,865 - +0.8
531,865 - +1.2
531,865 - -1.7
531,865 - -0.7
531,865 - -1.1
531,865 - -1.9
531,865 - -0.5
531,865 - +0.1
531,865 - +0.2
532,056 - Psest_0482 0.37 -0.2
532,058 + Psest_0482 0.37 -0.6
532,058 + Psest_0482 0.37 +0.9
532,058 + Psest_0482 0.37 +0.9
532,142 + Psest_0482 0.51 -0.8
532,166 + Psest_0482 0.55 -0.8
532,292 + Psest_0482 0.76 -2.6
532,313 + Psest_0482 0.79 +1.0
532,313 + Psest_0482 0.79 -0.6
532,313 + Psest_0482 0.79 +0.3
532,333 + Psest_0482 0.83 -2.2
532,576 + -0.8
532,576 + -2.1
532,576 + +0.2
532,576 + -1.8
532,576 + +1.3
532,576 + +0.7
532,576 + -0.8
532,576 + +0.5
532,576 + -0.6
532,576 + -0.3

Or see this region's nucleotide sequence