Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2481

Experiment: D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2480 and Psest_2481 are separated by 154 nucleotidesPsest_2481 and Psest_2482 are separated by 63 nucleotides Psest_2480: Psest_2480 - Methyl-accepting chemotaxis protein, at 2,652,302 to 2,653,921 _2480 Psest_2481: Psest_2481 - hypothetical protein, at 2,654,076 to 2,654,540 _2481 Psest_2482: Psest_2482 - Predicted metal-dependent hydrolase of the TIM-barrel fold, at 2,654,604 to 2,655,629 _2482 Position (kb) 2654 2655Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2653.288 kb on + strand, within Psest_2480at 2653.576 kb on - strand, within Psest_2480at 2653.576 kb on - strand, within Psest_2480at 2653.624 kb on - strand, within Psest_2480at 2653.986 kb on - strandat 2654.023 kb on + strandat 2654.024 kb on - strandat 2654.218 kb on - strand, within Psest_2481at 2654.218 kb on - strand, within Psest_2481at 2654.218 kb on - strand, within Psest_2481at 2654.276 kb on - strand, within Psest_2481at 2654.276 kb on - strand, within Psest_2481at 2654.276 kb on - strand, within Psest_2481at 2654.276 kb on - strand, within Psest_2481at 2654.424 kb on + strand, within Psest_2481at 2654.424 kb on + strand, within Psest_2481at 2654.424 kb on + strand, within Psest_2481at 2654.424 kb on + strand, within Psest_2481at 2654.472 kb on + strand, within Psest_2481at 2654.485 kb on - strand, within Psest_2481at 2654.485 kb on - strand, within Psest_2481at 2654.487 kb on + strand, within Psest_2481at 2654.529 kb on + strandat 2654.529 kb on + strandat 2654.530 kb on - strandat 2654.530 kb on - strandat 2654.574 kb on + strandat 2654.574 kb on + strandat 2654.575 kb on - strandat 2654.717 kb on + strand, within Psest_2482at 2654.836 kb on + strand, within Psest_2482at 2654.836 kb on + strand, within Psest_2482at 2654.837 kb on - strand, within Psest_2482at 2654.869 kb on + strand, within Psest_2482at 2654.869 kb on + strand, within Psest_2482at 2654.869 kb on + strand, within Psest_2482at 2654.870 kb on - strand, within Psest_2482at 2654.870 kb on - strand, within Psest_2482at 2654.870 kb on - strand, within Psest_2482at 2654.870 kb on - strand, within Psest_2482at 2655.104 kb on - strand, within Psest_2482at 2655.104 kb on - strand, within Psest_2482at 2655.362 kb on - strand, within Psest_2482at 2655.362 kb on - strand, within Psest_2482at 2655.362 kb on - strand, within Psest_2482at 2655.385 kb on + strand, within Psest_2482at 2655.526 kb on + strand, within Psest_2482at 2655.526 kb on + strand, within Psest_2482at 2655.526 kb on + strand, within Psest_2482at 2655.526 kb on + strand, within Psest_2482at 2655.526 kb on + strand, within Psest_2482

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.032 mg/ml
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2,653,288 + Psest_2480 0.61 +1.5
2,653,576 - Psest_2480 0.79 -1.0
2,653,576 - Psest_2480 0.79 +0.2
2,653,624 - Psest_2480 0.82 -0.3
2,653,986 - +0.2
2,654,023 + +0.1
2,654,024 - +0.7
2,654,218 - Psest_2481 0.31 -0.4
2,654,218 - Psest_2481 0.31 +0.7
2,654,218 - Psest_2481 0.31 +0.8
2,654,276 - Psest_2481 0.43 -0.2
2,654,276 - Psest_2481 0.43 +0.7
2,654,276 - Psest_2481 0.43 +0.7
2,654,276 - Psest_2481 0.43 +0.5
2,654,424 + Psest_2481 0.75 -2.2
2,654,424 + Psest_2481 0.75 -2.1
2,654,424 + Psest_2481 0.75 +2.6
2,654,424 + Psest_2481 0.75 -2.8
2,654,472 + Psest_2481 0.85 -0.8
2,654,485 - Psest_2481 0.88 +0.8
2,654,485 - Psest_2481 0.88 +0.9
2,654,487 + Psest_2481 0.88 +2.1
2,654,529 + +0.5
2,654,529 + +1.2
2,654,530 - +2.8
2,654,530 - -1.8
2,654,574 + -2.3
2,654,574 + +1.2
2,654,575 - -0.3
2,654,717 + Psest_2482 0.11 -0.8
2,654,836 + Psest_2482 0.23 +0.2
2,654,836 + Psest_2482 0.23 +0.4
2,654,837 - Psest_2482 0.23 -0.3
2,654,869 + Psest_2482 0.26 -1.1
2,654,869 + Psest_2482 0.26 -0.8
2,654,869 + Psest_2482 0.26 +0.9
2,654,870 - Psest_2482 0.26 +1.6
2,654,870 - Psest_2482 0.26 -1.3
2,654,870 - Psest_2482 0.26 +1.6
2,654,870 - Psest_2482 0.26 +0.5
2,655,104 - Psest_2482 0.49 +0.2
2,655,104 - Psest_2482 0.49 -0.0
2,655,362 - Psest_2482 0.74 -0.8
2,655,362 - Psest_2482 0.74 -2.4
2,655,362 - Psest_2482 0.74 -0.0
2,655,385 + Psest_2482 0.76 -0.5
2,655,526 + Psest_2482 0.90 -0.9
2,655,526 + Psest_2482 0.90 -2.0
2,655,526 + Psest_2482 0.90 -0.7
2,655,526 + Psest_2482 0.90 -1.1
2,655,526 + Psest_2482 0.90 -1.9

Or see this region's nucleotide sequence