Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2280

Experiment: D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2279 and Psest_2280 are separated by 85 nucleotidesPsest_2280 and Psest_2281 overlap by 20 nucleotides Psest_2279: Psest_2279 - coenzyme PQQ biosynthesis protein E, at 2,427,544 to 2,428,689 _2279 Psest_2280: Psest_2280 - Predicted membrane protein, at 2,428,775 to 2,429,278 _2280 Psest_2281: Psest_2281 - Phosphoserine aminotransferase, at 2,429,259 to 2,430,359 _2281 Position (kb) 2428 2429 2430Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2427.820 kb on + strand, within Psest_2279at 2427.821 kb on - strand, within Psest_2279at 2427.823 kb on + strand, within Psest_2279at 2427.823 kb on + strand, within Psest_2279at 2427.823 kb on + strand, within Psest_2279at 2427.823 kb on + strand, within Psest_2279at 2427.824 kb on - strand, within Psest_2279at 2427.824 kb on - strand, within Psest_2279at 2427.824 kb on - strand, within Psest_2279at 2427.824 kb on - strand, within Psest_2279at 2427.824 kb on - strand, within Psest_2279at 2428.100 kb on - strand, within Psest_2279at 2428.123 kb on + strand, within Psest_2279at 2428.123 kb on + strand, within Psest_2279at 2428.123 kb on + strand, within Psest_2279at 2428.124 kb on - strand, within Psest_2279at 2428.126 kb on + strand, within Psest_2279at 2428.126 kb on + strand, within Psest_2279at 2428.126 kb on + strand, within Psest_2279at 2428.126 kb on + strand, within Psest_2279at 2428.126 kb on + strand, within Psest_2279at 2428.127 kb on - strand, within Psest_2279at 2428.127 kb on - strand, within Psest_2279at 2428.127 kb on - strand, within Psest_2279at 2428.199 kb on + strand, within Psest_2279at 2428.199 kb on + strand, within Psest_2279at 2428.199 kb on + strand, within Psest_2279at 2428.200 kb on - strand, within Psest_2279at 2428.200 kb on - strand, within Psest_2279at 2428.200 kb on - strand, within Psest_2279at 2428.200 kb on - strand, within Psest_2279at 2428.200 kb on - strand, within Psest_2279at 2428.200 kb on - strand, within Psest_2279at 2428.200 kb on - strand, within Psest_2279at 2428.203 kb on + strand, within Psest_2279at 2428.203 kb on + strand, within Psest_2279at 2428.204 kb on - strand, within Psest_2279at 2428.204 kb on - strand, within Psest_2279at 2428.239 kb on - strand, within Psest_2279at 2428.239 kb on - strand, within Psest_2279at 2428.239 kb on - strand, within Psest_2279at 2428.258 kb on + strand, within Psest_2279at 2428.258 kb on + strand, within Psest_2279at 2428.259 kb on - strand, within Psest_2279at 2428.261 kb on + strand, within Psest_2279at 2428.261 kb on + strand, within Psest_2279at 2428.262 kb on - strand, within Psest_2279at 2428.262 kb on - strand, within Psest_2279at 2428.262 kb on - strand, within Psest_2279at 2428.620 kb on + strandat 2428.621 kb on - strandat 2428.747 kb on - strandat 2428.846 kb on + strand, within Psest_2280at 2428.846 kb on + strand, within Psest_2280at 2428.846 kb on + strand, within Psest_2280at 2428.846 kb on + strand, within Psest_2280at 2428.847 kb on - strand, within Psest_2280at 2428.847 kb on - strand, within Psest_2280at 2428.847 kb on - strand, within Psest_2280at 2429.040 kb on + strand, within Psest_2280at 2429.040 kb on + strand, within Psest_2280at 2429.041 kb on - strand, within Psest_2280at 2429.041 kb on - strand, within Psest_2280at 2429.189 kb on - strand, within Psest_2280at 2429.292 kb on + strandat 2429.292 kb on + strandat 2429.293 kb on - strandat 2429.293 kb on - strandat 2429.458 kb on + strand, within Psest_2281at 2429.478 kb on + strand, within Psest_2281at 2429.479 kb on - strand, within Psest_2281at 2429.479 kb on - strand, within Psest_2281at 2429.776 kb on + strand, within Psest_2281at 2429.848 kb on - strand, within Psest_2281at 2429.848 kb on - strand, within Psest_2281at 2429.890 kb on + strand, within Psest_2281at 2429.890 kb on + strand, within Psest_2281at 2429.891 kb on - strand, within Psest_2281at 2429.891 kb on - strand, within Psest_2281at 2429.897 kb on - strand, within Psest_2281at 2429.953 kb on - strand, within Psest_2281at 2429.953 kb on - strand, within Psest_2281at 2430.045 kb on - strand, within Psest_2281at 2430.126 kb on + strand, within Psest_2281at 2430.126 kb on + strand, within Psest_2281at 2430.272 kb on - strandat 2430.272 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.032 mg/ml
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2,427,820 + Psest_2279 0.24 +2.1
2,427,821 - Psest_2279 0.24 -0.4
2,427,823 + Psest_2279 0.24 -1.7
2,427,823 + Psest_2279 0.24 -0.3
2,427,823 + Psest_2279 0.24 +0.0
2,427,823 + Psest_2279 0.24 +1.0
2,427,824 - Psest_2279 0.24 +1.4
2,427,824 - Psest_2279 0.24 +0.5
2,427,824 - Psest_2279 0.24 +0.3
2,427,824 - Psest_2279 0.24 +1.1
2,427,824 - Psest_2279 0.24 -0.6
2,428,100 - Psest_2279 0.49 -1.3
2,428,123 + Psest_2279 0.51 +0.7
2,428,123 + Psest_2279 0.51 -0.3
2,428,123 + Psest_2279 0.51 +0.7
2,428,124 - Psest_2279 0.51 +1.6
2,428,126 + Psest_2279 0.51 +0.1
2,428,126 + Psest_2279 0.51 +1.0
2,428,126 + Psest_2279 0.51 -2.8
2,428,126 + Psest_2279 0.51 -1.9
2,428,126 + Psest_2279 0.51 +1.0
2,428,127 - Psest_2279 0.51 -1.0
2,428,127 - Psest_2279 0.51 +0.8
2,428,127 - Psest_2279 0.51 -0.7
2,428,199 + Psest_2279 0.57 -2.0
2,428,199 + Psest_2279 0.57 +0.6
2,428,199 + Psest_2279 0.57 +0.1
2,428,200 - Psest_2279 0.57 +1.7
2,428,200 - Psest_2279 0.57 -1.6
2,428,200 - Psest_2279 0.57 -0.0
2,428,200 - Psest_2279 0.57 +0.2
2,428,200 - Psest_2279 0.57 -0.5
2,428,200 - Psest_2279 0.57 -1.0
2,428,200 - Psest_2279 0.57 -0.5
2,428,203 + Psest_2279 0.58 +0.8
2,428,203 + Psest_2279 0.58 -1.5
2,428,204 - Psest_2279 0.58 +0.2
2,428,204 - Psest_2279 0.58 -1.0
2,428,239 - Psest_2279 0.61 +1.2
2,428,239 - Psest_2279 0.61 -1.6
2,428,239 - Psest_2279 0.61 -0.0
2,428,258 + Psest_2279 0.62 -0.9
2,428,258 + Psest_2279 0.62 -1.0
2,428,259 - Psest_2279 0.62 +0.4
2,428,261 + Psest_2279 0.63 +2.8
2,428,261 + Psest_2279 0.63 +0.7
2,428,262 - Psest_2279 0.63 -0.6
2,428,262 - Psest_2279 0.63 -0.6
2,428,262 - Psest_2279 0.63 +0.3
2,428,620 + +0.2
2,428,621 - +0.8
2,428,747 - +0.0
2,428,846 + Psest_2280 0.14 -2.0
2,428,846 + Psest_2280 0.14 -1.2
2,428,846 + Psest_2280 0.14 -1.5
2,428,846 + Psest_2280 0.14 -1.8
2,428,847 - Psest_2280 0.14 -1.7
2,428,847 - Psest_2280 0.14 -0.5
2,428,847 - Psest_2280 0.14 -1.4
2,429,040 + Psest_2280 0.53 -1.0
2,429,040 + Psest_2280 0.53 -0.8
2,429,041 - Psest_2280 0.53 +2.0
2,429,041 - Psest_2280 0.53 -0.3
2,429,189 - Psest_2280 0.82 -1.0
2,429,292 + -2.2
2,429,292 + -0.2
2,429,293 - -1.3
2,429,293 - +1.5
2,429,458 + Psest_2281 0.18 -1.8
2,429,478 + Psest_2281 0.20 +0.9
2,429,479 - Psest_2281 0.20 +0.2
2,429,479 - Psest_2281 0.20 +0.5
2,429,776 + Psest_2281 0.47 -1.6
2,429,848 - Psest_2281 0.53 -2.0
2,429,848 - Psest_2281 0.53 -1.4
2,429,890 + Psest_2281 0.57 -0.2
2,429,890 + Psest_2281 0.57 +0.5
2,429,891 - Psest_2281 0.57 -1.8
2,429,891 - Psest_2281 0.57 -1.0
2,429,897 - Psest_2281 0.58 -0.6
2,429,953 - Psest_2281 0.63 +0.9
2,429,953 - Psest_2281 0.63 -1.6
2,430,045 - Psest_2281 0.71 +1.6
2,430,126 + Psest_2281 0.79 -1.3
2,430,126 + Psest_2281 0.79 -3.3
2,430,272 - -0.5
2,430,272 - -0.3

Or see this region's nucleotide sequence