Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0126

Experiment: D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0125 and Psest_0126 are separated by 11 nucleotidesPsest_0126 and Psest_0127 overlap by 37 nucleotides Psest_0125: Psest_0125 - type VI secretion ATPase, ClpV1 family, at 122,036 to 124,627 _0125 Psest_0126: Psest_0126 - type VI secretion protein, VC_A0111 family, at 124,639 to 125,646 _0126 Psest_0127: Psest_0127 - type VI secretion protein, VC_A0110 family, at 125,610 to 127,400 _0127 Position (kb) 124 125 126Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 123.648 kb on + strand, within Psest_0125at 123.648 kb on + strand, within Psest_0125at 123.657 kb on + strand, within Psest_0125at 123.657 kb on + strand, within Psest_0125at 123.657 kb on + strand, within Psest_0125at 123.658 kb on - strand, within Psest_0125at 123.658 kb on - strand, within Psest_0125at 124.254 kb on + strand, within Psest_0125at 124.254 kb on + strand, within Psest_0125at 124.598 kb on + strandat 124.599 kb on - strandat 125.048 kb on + strand, within Psest_0126at 125.048 kb on + strand, within Psest_0126at 125.048 kb on + strand, within Psest_0126at 125.048 kb on + strand, within Psest_0126at 125.049 kb on - strand, within Psest_0126at 125.049 kb on - strand, within Psest_0126at 125.049 kb on - strand, within Psest_0126at 125.049 kb on - strand, within Psest_0126at 125.052 kb on - strand, within Psest_0126at 125.111 kb on + strand, within Psest_0126at 125.112 kb on - strand, within Psest_0126at 125.240 kb on + strand, within Psest_0126at 125.348 kb on + strand, within Psest_0126at 125.348 kb on + strand, within Psest_0126at 125.348 kb on + strand, within Psest_0126at 125.349 kb on - strand, within Psest_0126at 125.349 kb on - strand, within Psest_0126at 125.349 kb on - strand, within Psest_0126at 125.349 kb on - strand, within Psest_0126at 125.349 kb on - strand, within Psest_0126at 125.582 kb on + strandat 125.583 kb on - strandat 125.650 kb on + strandat 125.650 kb on + strandat 125.650 kb on + strandat 125.651 kb on - strandat 125.689 kb on + strandat 125.707 kb on + strandat 125.799 kb on + strand, within Psest_0127at 125.905 kb on + strand, within Psest_0127at 125.905 kb on + strand, within Psest_0127at 125.905 kb on + strand, within Psest_0127at 125.905 kb on + strand, within Psest_0127at 125.906 kb on - strand, within Psest_0127at 125.923 kb on + strand, within Psest_0127at 125.923 kb on + strand, within Psest_0127at 125.923 kb on + strand, within Psest_0127at 125.923 kb on + strand, within Psest_0127at 125.924 kb on - strand, within Psest_0127at 125.924 kb on - strand, within Psest_0127at 125.924 kb on - strand, within Psest_0127at 125.924 kb on - strand, within Psest_0127at 125.924 kb on - strand, within Psest_0127at 125.971 kb on + strand, within Psest_0127at 125.971 kb on + strand, within Psest_0127at 125.971 kb on + strand, within Psest_0127at 125.971 kb on + strand, within Psest_0127at 125.971 kb on + strand, within Psest_0127at 125.971 kb on + strand, within Psest_0127at 125.972 kb on - strand, within Psest_0127at 125.972 kb on - strand, within Psest_0127at 125.972 kb on - strand, within Psest_0127at 125.972 kb on - strand, within Psest_0127at 125.972 kb on - strand, within Psest_0127at 126.007 kb on + strand, within Psest_0127at 126.008 kb on - strand, within Psest_0127at 126.008 kb on - strand, within Psest_0127at 126.032 kb on - strand, within Psest_0127at 126.250 kb on + strand, within Psest_0127at 126.251 kb on - strand, within Psest_0127at 126.313 kb on + strand, within Psest_0127at 126.314 kb on - strand, within Psest_0127at 126.314 kb on - strand, within Psest_0127at 126.391 kb on + strand, within Psest_0127at 126.391 kb on + strand, within Psest_0127at 126.391 kb on + strand, within Psest_0127at 126.391 kb on + strand, within Psest_0127at 126.391 kb on + strand, within Psest_0127at 126.392 kb on - strand, within Psest_0127at 126.392 kb on - strand, within Psest_0127at 126.392 kb on - strand, within Psest_0127at 126.392 kb on - strand, within Psest_0127at 126.406 kb on - strand, within Psest_0127at 126.412 kb on + strand, within Psest_0127at 126.412 kb on + strand, within Psest_0127at 126.413 kb on - strand, within Psest_0127at 126.513 kb on + strand, within Psest_0127at 126.513 kb on + strand, within Psest_0127at 126.513 kb on + strand, within Psest_0127at 126.513 kb on + strand, within Psest_0127at 126.514 kb on - strand, within Psest_0127at 126.514 kb on - strand, within Psest_0127at 126.514 kb on - strand, within Psest_0127at 126.514 kb on - strand, within Psest_0127at 126.514 kb on - strand, within Psest_0127

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.032 mg/ml
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123,648 + Psest_0125 0.62 +0.5
123,648 + Psest_0125 0.62 +0.8
123,657 + Psest_0125 0.63 -1.6
123,657 + Psest_0125 0.63 -0.7
123,657 + Psest_0125 0.63 +2.6
123,658 - Psest_0125 0.63 -0.0
123,658 - Psest_0125 0.63 -0.5
124,254 + Psest_0125 0.86 -0.2
124,254 + Psest_0125 0.86 +0.7
124,598 + -0.7
124,599 - -0.8
125,048 + Psest_0126 0.41 +1.3
125,048 + Psest_0126 0.41 +1.7
125,048 + Psest_0126 0.41 +2.4
125,048 + Psest_0126 0.41 +0.2
125,049 - Psest_0126 0.41 -2.8
125,049 - Psest_0126 0.41 -0.8
125,049 - Psest_0126 0.41 +0.7
125,049 - Psest_0126 0.41 +1.0
125,052 - Psest_0126 0.41 +0.8
125,111 + Psest_0126 0.47 -1.7
125,112 - Psest_0126 0.47 +0.3
125,240 + Psest_0126 0.60 -1.2
125,348 + Psest_0126 0.70 +0.6
125,348 + Psest_0126 0.70 -2.7
125,348 + Psest_0126 0.70 +1.2
125,349 - Psest_0126 0.70 +1.7
125,349 - Psest_0126 0.70 +1.3
125,349 - Psest_0126 0.70 -0.9
125,349 - Psest_0126 0.70 -0.5
125,349 - Psest_0126 0.70 -0.1
125,582 + +0.5
125,583 - -0.2
125,650 + -0.3
125,650 + +0.2
125,650 + +0.8
125,651 - +1.2
125,689 + -0.5
125,707 + +2.3
125,799 + Psest_0127 0.11 -1.2
125,905 + Psest_0127 0.16 -1.5
125,905 + Psest_0127 0.16 -0.4
125,905 + Psest_0127 0.16 +0.8
125,905 + Psest_0127 0.16 -0.4
125,906 - Psest_0127 0.17 -2.5
125,923 + Psest_0127 0.17 +2.2
125,923 + Psest_0127 0.17 -1.6
125,923 + Psest_0127 0.17 +2.3
125,923 + Psest_0127 0.17 +0.7
125,924 - Psest_0127 0.18 -0.1
125,924 - Psest_0127 0.18 +0.8
125,924 - Psest_0127 0.18 -1.2
125,924 - Psest_0127 0.18 -1.2
125,924 - Psest_0127 0.18 +0.7
125,971 + Psest_0127 0.20 -1.0
125,971 + Psest_0127 0.20 +1.5
125,971 + Psest_0127 0.20 -0.9
125,971 + Psest_0127 0.20 -1.9
125,971 + Psest_0127 0.20 +0.7
125,971 + Psest_0127 0.20 -1.2
125,972 - Psest_0127 0.20 +0.7
125,972 - Psest_0127 0.20 +1.4
125,972 - Psest_0127 0.20 -0.2
125,972 - Psest_0127 0.20 +1.8
125,972 - Psest_0127 0.20 -0.3
126,007 + Psest_0127 0.22 +0.4
126,008 - Psest_0127 0.22 -1.1
126,008 - Psest_0127 0.22 -2.3
126,032 - Psest_0127 0.24 +1.3
126,250 + Psest_0127 0.36 -0.3
126,251 - Psest_0127 0.36 -0.8
126,313 + Psest_0127 0.39 +2.0
126,314 - Psest_0127 0.39 -1.3
126,314 - Psest_0127 0.39 +0.1
126,391 + Psest_0127 0.44 +0.0
126,391 + Psest_0127 0.44 +1.0
126,391 + Psest_0127 0.44 -2.2
126,391 + Psest_0127 0.44 -0.1
126,391 + Psest_0127 0.44 -0.2
126,392 - Psest_0127 0.44 -0.5
126,392 - Psest_0127 0.44 -0.4
126,392 - Psest_0127 0.44 +0.7
126,392 - Psest_0127 0.44 -0.3
126,406 - Psest_0127 0.44 +0.6
126,412 + Psest_0127 0.45 -2.6
126,412 + Psest_0127 0.45 +0.2
126,413 - Psest_0127 0.45 -0.6
126,513 + Psest_0127 0.50 +1.8
126,513 + Psest_0127 0.50 +0.6
126,513 + Psest_0127 0.50 -0.6
126,513 + Psest_0127 0.50 -0.4
126,514 - Psest_0127 0.50 +1.4
126,514 - Psest_0127 0.50 +0.6
126,514 - Psest_0127 0.50 -1.0
126,514 - Psest_0127 0.50 -0.3
126,514 - Psest_0127 0.50 +0.2

Or see this region's nucleotide sequence