Experiment: D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0063 and Psest_0064 are separated by 171 nucleotides Psest_0064 and Psest_0065 are separated by 271 nucleotides
Psest_0063: Psest_0063 - tryptophan synthase, beta subunit, at 62,768 to 63,979
_0063
Psest_0064: Psest_0064 - Transcriptional regulator, at 64,151 to 65,053
_0064
Psest_0065: Psest_0065 - Subtilisin-like serine proteases, at 65,325 to 66,716
_0065
Position (kb) 64
65
66 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4
5 at 63.405 kb on + strand, within Psest_0063 at 63.405 kb on + strand, within Psest_0063 at 63.406 kb on - strand, within Psest_0063 at 63.406 kb on - strand, within Psest_0063 at 63.406 kb on - strand, within Psest_0063 at 63.406 kb on - strand, within Psest_0063 at 63.406 kb on - strand, within Psest_0063 at 63.406 kb on - strand, within Psest_0063 at 63.406 kb on - strand, within Psest_0063 at 63.406 kb on - strand, within Psest_0063 at 63.564 kb on + strand, within Psest_0063 at 63.565 kb on - strand, within Psest_0063 at 63.565 kb on - strand, within Psest_0063 at 63.565 kb on - strand, within Psest_0063 at 63.565 kb on - strand, within Psest_0063 at 63.565 kb on - strand, within Psest_0063 at 63.741 kb on + strand, within Psest_0063 at 63.741 kb on + strand, within Psest_0063 at 63.741 kb on + strand, within Psest_0063 at 63.741 kb on + strand, within Psest_0063 at 63.741 kb on + strand, within Psest_0063 at 63.742 kb on - strand, within Psest_0063 at 63.742 kb on - strand, within Psest_0063 at 63.742 kb on - strand, within Psest_0063 at 63.742 kb on - strand, within Psest_0063 at 63.787 kb on - strand, within Psest_0063 at 63.810 kb on + strand, within Psest_0063 at 63.810 kb on + strand, within Psest_0063 at 63.810 kb on + strand, within Psest_0063 at 63.810 kb on + strand, within Psest_0063 at 63.810 kb on + strand, within Psest_0063 at 63.810 kb on + strand, within Psest_0063 at 63.810 kb on + strand, within Psest_0063 at 63.810 kb on + strand, within Psest_0063 at 63.811 kb on - strand, within Psest_0063 at 63.811 kb on - strand, within Psest_0063 at 63.826 kb on - strand, within Psest_0063 at 63.826 kb on - strand, within Psest_0063 at 64.086 kb on + strand at 64.150 kb on + strand at 64.150 kb on + strand at 64.209 kb on + strand at 64.210 kb on - strand at 64.210 kb on - strand at 64.210 kb on - strand at 64.829 kb on + strand, within Psest_0064 at 64.829 kb on + strand, within Psest_0064 at 64.829 kb on + strand, within Psest_0064 at 64.829 kb on + strand, within Psest_0064 at 64.830 kb on - strand, within Psest_0064 at 64.830 kb on - strand, within Psest_0064 at 64.830 kb on - strand, within Psest_0064 at 64.830 kb on - strand, within Psest_0064 at 64.830 kb on - strand, within Psest_0064 at 65.099 kb on + strand at 65.099 kb on + strand at 65.179 kb on + strand at 65.246 kb on + strand at 65.246 kb on + strand at 65.247 kb on - strand at 65.247 kb on - strand at 65.247 kb on - strand at 65.269 kb on + strand at 65.269 kb on + strand at 65.269 kb on + strand at 65.270 kb on - strand at 65.270 kb on - strand at 65.270 kb on - strand at 65.270 kb on - strand at 65.683 kb on - strand, within Psest_0065 at 65.724 kb on - strand, within Psest_0065 at 65.769 kb on + strand, within Psest_0065 at 65.994 kb on + strand, within Psest_0065
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.032 mg/ml remove 63,405 + Psest_0063 0.53 -2.0 63,405 + Psest_0063 0.53 -3.5 63,406 - Psest_0063 0.53 -3.4 63,406 - Psest_0063 0.53 -3.3 63,406 - Psest_0063 0.53 -4.6 63,406 - Psest_0063 0.53 -3.6 63,406 - Psest_0063 0.53 -1.8 63,406 - Psest_0063 0.53 -1.5 63,406 - Psest_0063 0.53 -0.6 63,406 - Psest_0063 0.53 -2.4 63,564 + Psest_0063 0.66 -4.5 63,565 - Psest_0063 0.66 -3.0 63,565 - Psest_0063 0.66 -4.4 63,565 - Psest_0063 0.66 -1.6 63,565 - Psest_0063 0.66 -1.6 63,565 - Psest_0063 0.66 -3.3 63,741 + Psest_0063 0.80 -4.8 63,741 + Psest_0063 0.80 -2.5 63,741 + Psest_0063 0.80 -0.3 63,741 + Psest_0063 0.80 -2.5 63,741 + Psest_0063 0.80 -3.1 63,742 - Psest_0063 0.80 -5.1 63,742 - Psest_0063 0.80 -3.2 63,742 - Psest_0063 0.80 -1.1 63,742 - Psest_0063 0.80 -0.6 63,787 - Psest_0063 0.84 -1.3 63,810 + Psest_0063 0.86 -2.1 63,810 + Psest_0063 0.86 -0.3 63,810 + Psest_0063 0.86 -4.8 63,810 + Psest_0063 0.86 -6.3 63,810 + Psest_0063 0.86 -2.8 63,810 + Psest_0063 0.86 -2.1 63,810 + Psest_0063 0.86 -2.7 63,810 + Psest_0063 0.86 -4.0 63,811 - Psest_0063 0.86 -0.3 63,811 - Psest_0063 0.86 -2.6 63,826 - Psest_0063 0.87 -5.1 63,826 - Psest_0063 0.87 -3.7 64,086 + -3.5 64,150 + +0.1 64,150 + +1.8 64,209 + -2.0 64,210 - +1.0 64,210 - +1.5 64,210 - +0.8 64,829 + Psest_0064 0.75 +0.6 64,829 + Psest_0064 0.75 +1.9 64,829 + Psest_0064 0.75 +1.2 64,829 + Psest_0064 0.75 +2.0 64,830 - Psest_0064 0.75 +2.7 64,830 - Psest_0064 0.75 +1.7 64,830 - Psest_0064 0.75 +0.6 64,830 - Psest_0064 0.75 +2.6 64,830 - Psest_0064 0.75 +0.6 65,099 + -1.1 65,099 + -2.1 65,179 + -1.9 65,246 + -0.6 65,246 + +0.5 65,247 - +2.0 65,247 - -0.9 65,247 - +1.3 65,269 + -1.4 65,269 + -0.2 65,269 + +1.0 65,270 - +1.6 65,270 - +1.1 65,270 - +5.0 65,270 - +2.6 65,683 - Psest_0065 0.26 -1.6 65,724 - Psest_0065 0.29 +0.8 65,769 + Psest_0065 0.32 +1.4 65,994 + Psest_0065 0.48 +0.9
Or see this region's nucleotide sequence