Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3847

Experiment: D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3846 and Psest_3847 are separated by 100 nucleotidesPsest_3847 and Psest_3848 are separated by 192 nucleotides Psest_3846: Psest_3846 - phosphate regulon sensor kinase PhoR, at 4,017,253 to 4,018,554 _3846 Psest_3847: Psest_3847 - Hemolysins and related proteins containing CBS domains, at 4,018,655 to 4,019,998 _3847 Psest_3848: Psest_3848 - hypothetical protein, at 4,020,191 to 4,020,952 _3848 Position (kb) 4018 4019 4020Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4017.715 kb on + strand, within Psest_3846at 4017.733 kb on + strand, within Psest_3846at 4017.733 kb on + strand, within Psest_3846at 4017.733 kb on + strand, within Psest_3846at 4017.733 kb on + strand, within Psest_3846at 4017.734 kb on - strand, within Psest_3846at 4017.734 kb on - strand, within Psest_3846at 4017.734 kb on - strand, within Psest_3846at 4017.734 kb on - strand, within Psest_3846at 4017.734 kb on - strand, within Psest_3846at 4017.734 kb on - strand, within Psest_3846at 4017.734 kb on - strand, within Psest_3846at 4017.907 kb on - strand, within Psest_3846at 4018.109 kb on + strand, within Psest_3846at 4018.109 kb on + strand, within Psest_3846at 4018.258 kb on + strand, within Psest_3846at 4018.258 kb on + strand, within Psest_3846at 4018.259 kb on - strand, within Psest_3846at 4018.259 kb on - strand, within Psest_3846at 4018.259 kb on - strand, within Psest_3846at 4018.259 kb on - strand, within Psest_3846at 4018.259 kb on - strand, within Psest_3846at 4018.673 kb on + strandat 4018.674 kb on - strandat 4018.688 kb on + strandat 4018.688 kb on + strandat 4018.688 kb on + strandat 4018.688 kb on + strandat 4018.689 kb on - strandat 4018.689 kb on - strandat 4018.841 kb on - strand, within Psest_3847at 4018.865 kb on + strand, within Psest_3847at 4018.865 kb on + strand, within Psest_3847at 4018.866 kb on - strand, within Psest_3847at 4018.866 kb on - strand, within Psest_3847at 4018.866 kb on - strand, within Psest_3847at 4018.866 kb on - strand, within Psest_3847at 4019.033 kb on + strand, within Psest_3847at 4019.033 kb on + strand, within Psest_3847at 4019.041 kb on + strand, within Psest_3847at 4019.123 kb on + strand, within Psest_3847at 4019.124 kb on - strand, within Psest_3847at 4019.132 kb on + strand, within Psest_3847at 4019.132 kb on + strand, within Psest_3847at 4019.133 kb on - strand, within Psest_3847at 4019.144 kb on + strand, within Psest_3847at 4019.144 kb on + strand, within Psest_3847at 4019.144 kb on + strand, within Psest_3847at 4019.157 kb on - strand, within Psest_3847at 4019.234 kb on + strand, within Psest_3847at 4019.234 kb on + strand, within Psest_3847at 4019.235 kb on - strand, within Psest_3847at 4019.235 kb on - strand, within Psest_3847at 4019.435 kb on + strand, within Psest_3847at 4019.435 kb on + strand, within Psest_3847at 4019.435 kb on + strand, within Psest_3847at 4019.435 kb on + strand, within Psest_3847at 4019.436 kb on - strand, within Psest_3847at 4019.436 kb on - strand, within Psest_3847at 4019.436 kb on - strand, within Psest_3847at 4019.436 kb on - strand, within Psest_3847at 4019.436 kb on - strand, within Psest_3847at 4019.453 kb on + strand, within Psest_3847at 4019.474 kb on + strand, within Psest_3847at 4019.474 kb on + strand, within Psest_3847at 4019.474 kb on + strand, within Psest_3847at 4019.474 kb on + strand, within Psest_3847at 4019.475 kb on - strand, within Psest_3847at 4019.475 kb on - strand, within Psest_3847at 4019.719 kb on + strand, within Psest_3847at 4019.719 kb on + strand, within Psest_3847at 4019.720 kb on - strand, within Psest_3847at 4019.762 kb on + strand, within Psest_3847at 4019.763 kb on - strand, within Psest_3847at 4019.873 kb on + strandat 4019.874 kb on - strandat 4019.874 kb on - strandat 4020.010 kb on - strandat 4020.029 kb on - strandat 4020.044 kb on + strandat 4020.105 kb on - strandat 4020.114 kb on + strandat 4020.114 kb on + strandat 4020.115 kb on - strandat 4020.115 kb on - strandat 4020.115 kb on - strandat 4020.115 kb on - strandat 4020.115 kb on - strandat 4020.115 kb on - strandat 4020.317 kb on + strand, within Psest_3848at 4020.318 kb on - strand, within Psest_3848at 4020.318 kb on - strand, within Psest_3848at 4020.318 kb on - strand, within Psest_3848at 4020.318 kb on - strand, within Psest_3848at 4020.374 kb on + strand, within Psest_3848at 4020.374 kb on + strand, within Psest_3848at 4020.375 kb on - strand, within Psest_3848at 4020.375 kb on - strand, within Psest_3848at 4020.375 kb on - strand, within Psest_3848at 4020.377 kb on + strand, within Psest_3848at 4020.377 kb on + strand, within Psest_3848at 4020.377 kb on + strand, within Psest_3848at 4020.377 kb on + strand, within Psest_3848at 4020.377 kb on + strand, within Psest_3848at 4020.377 kb on + strand, within Psest_3848at 4020.377 kb on + strand, within Psest_3848at 4020.378 kb on - strand, within Psest_3848at 4020.378 kb on - strand, within Psest_3848at 4020.378 kb on - strand, within Psest_3848at 4020.378 kb on - strand, within Psest_3848at 4020.378 kb on - strand, within Psest_3848at 4020.378 kb on - strand, within Psest_3848at 4020.378 kb on - strand, within Psest_3848at 4020.378 kb on - strand, within Psest_3848at 4020.378 kb on - strand, within Psest_3848at 4020.419 kb on + strand, within Psest_3848at 4020.420 kb on - strand, within Psest_3848at 4020.467 kb on + strand, within Psest_3848at 4020.467 kb on + strand, within Psest_3848at 4020.467 kb on + strand, within Psest_3848at 4020.467 kb on + strand, within Psest_3848at 4020.467 kb on + strand, within Psest_3848at 4020.467 kb on + strand, within Psest_3848at 4020.467 kb on + strand, within Psest_3848at 4020.467 kb on + strand, within Psest_3848at 4020.467 kb on + strand, within Psest_3848at 4020.467 kb on + strand, within Psest_3848at 4020.467 kb on + strand, within Psest_3848at 4020.467 kb on + strand, within Psest_3848at 4020.467 kb on + strand, within Psest_3848at 4020.467 kb on + strand, within Psest_3848at 4020.468 kb on - strand, within Psest_3848at 4020.468 kb on - strand, within Psest_3848at 4020.468 kb on - strand, within Psest_3848at 4020.468 kb on - strand, within Psest_3848at 4020.468 kb on - strand, within Psest_3848at 4020.468 kb on - strand, within Psest_3848at 4020.468 kb on - strand, within Psest_3848at 4020.468 kb on - strand, within Psest_3848at 4020.468 kb on - strand, within Psest_3848at 4020.468 kb on - strand, within Psest_3848at 4020.468 kb on - strand, within Psest_3848at 4020.468 kb on - strand, within Psest_3848at 4020.468 kb on - strand, within Psest_3848at 4020.468 kb on - strand, within Psest_3848at 4020.468 kb on - strand, within Psest_3848at 4020.468 kb on - strand, within Psest_3848at 4020.468 kb on - strand, within Psest_3848at 4020.527 kb on + strand, within Psest_3848at 4020.527 kb on + strand, within Psest_3848at 4020.527 kb on + strand, within Psest_3848at 4020.527 kb on + strand, within Psest_3848at 4020.527 kb on + strand, within Psest_3848at 4020.527 kb on + strand, within Psest_3848at 4020.527 kb on + strand, within Psest_3848at 4020.527 kb on + strand, within Psest_3848at 4020.527 kb on + strand, within Psest_3848at 4020.527 kb on + strand, within Psest_3848at 4020.527 kb on + strand, within Psest_3848at 4020.527 kb on + strand, within Psest_3848at 4020.527 kb on + strand, within Psest_3848at 4020.527 kb on + strand, within Psest_3848at 4020.527 kb on + strand, within Psest_3848at 4020.528 kb on - strand, within Psest_3848at 4020.528 kb on - strand, within Psest_3848at 4020.528 kb on - strand, within Psest_3848at 4020.528 kb on - strand, within Psest_3848at 4020.528 kb on - strand, within Psest_3848at 4020.528 kb on - strand, within Psest_3848at 4020.528 kb on - strand, within Psest_3848at 4020.528 kb on - strand, within Psest_3848at 4020.528 kb on - strand, within Psest_3848at 4020.528 kb on - strand, within Psest_3848at 4020.528 kb on - strand, within Psest_3848at 4020.528 kb on - strand, within Psest_3848at 4020.528 kb on - strand, within Psest_3848at 4020.528 kb on - strand, within Psest_3848at 4020.656 kb on + strand, within Psest_3848at 4020.656 kb on + strand, within Psest_3848at 4020.662 kb on + strand, within Psest_3848at 4020.662 kb on + strand, within Psest_3848at 4020.662 kb on + strand, within Psest_3848at 4020.662 kb on + strand, within Psest_3848at 4020.662 kb on + strand, within Psest_3848at 4020.662 kb on + strand, within Psest_3848at 4020.662 kb on + strand, within Psest_3848at 4020.662 kb on + strand, within Psest_3848at 4020.663 kb on - strand, within Psest_3848at 4020.677 kb on + strand, within Psest_3848at 4020.677 kb on + strand, within Psest_3848at 4020.677 kb on + strand, within Psest_3848at 4020.684 kb on + strand, within Psest_3848at 4020.848 kb on + strand, within Psest_3848at 4020.848 kb on + strand, within Psest_3848at 4020.849 kb on - strand, within Psest_3848at 4020.849 kb on - strand, within Psest_3848at 4020.851 kb on + strand, within Psest_3848at 4020.851 kb on + strand, within Psest_3848at 4020.851 kb on + strand, within Psest_3848at 4020.851 kb on + strand, within Psest_3848at 4020.851 kb on + strand, within Psest_3848at 4020.851 kb on + strand, within Psest_3848at 4020.851 kb on + strand, within Psest_3848at 4020.851 kb on + strand, within Psest_3848at 4020.851 kb on + strand, within Psest_3848at 4020.852 kb on - strand, within Psest_3848at 4020.852 kb on - strand, within Psest_3848at 4020.852 kb on - strand, within Psest_3848at 4020.852 kb on - strand, within Psest_3848at 4020.852 kb on - strand, within Psest_3848at 4020.852 kb on - strand, within Psest_3848at 4020.942 kb on + strandat 4020.950 kb on + strandat 4020.950 kb on + strandat 4020.950 kb on + strandat 4020.950 kb on + strandat 4020.950 kb on + strandat 4020.950 kb on + strandat 4020.950 kb on + strandat 4020.951 kb on - strandat 4020.951 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.032 mg/ml
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4,017,715 + Psest_3846 0.35 -0.1
4,017,733 + Psest_3846 0.37 -1.4
4,017,733 + Psest_3846 0.37 -1.7
4,017,733 + Psest_3846 0.37 +0.9
4,017,733 + Psest_3846 0.37 +1.8
4,017,734 - Psest_3846 0.37 -0.6
4,017,734 - Psest_3846 0.37 +1.8
4,017,734 - Psest_3846 0.37 +2.1
4,017,734 - Psest_3846 0.37 -2.3
4,017,734 - Psest_3846 0.37 +1.0
4,017,734 - Psest_3846 0.37 +0.3
4,017,734 - Psest_3846 0.37 +4.3
4,017,907 - Psest_3846 0.50 -0.3
4,018,109 + Psest_3846 0.66 -1.2
4,018,109 + Psest_3846 0.66 -0.5
4,018,258 + Psest_3846 0.77 +0.1
4,018,258 + Psest_3846 0.77 -2.4
4,018,259 - Psest_3846 0.77 -0.6
4,018,259 - Psest_3846 0.77 -2.6
4,018,259 - Psest_3846 0.77 +0.4
4,018,259 - Psest_3846 0.77 +2.4
4,018,259 - Psest_3846 0.77 +1.0
4,018,673 + -0.8
4,018,674 - +0.2
4,018,688 + +2.1
4,018,688 + -0.4
4,018,688 + +1.1
4,018,688 + +1.2
4,018,689 - +1.1
4,018,689 - -0.1
4,018,841 - Psest_3847 0.14 +0.5
4,018,865 + Psest_3847 0.16 +0.0
4,018,865 + Psest_3847 0.16 +0.3
4,018,866 - Psest_3847 0.16 +0.6
4,018,866 - Psest_3847 0.16 -0.6
4,018,866 - Psest_3847 0.16 +0.7
4,018,866 - Psest_3847 0.16 +1.5
4,019,033 + Psest_3847 0.28 -2.3
4,019,033 + Psest_3847 0.28 -1.2
4,019,041 + Psest_3847 0.29 +2.0
4,019,123 + Psest_3847 0.35 +0.9
4,019,124 - Psest_3847 0.35 +0.5
4,019,132 + Psest_3847 0.35 +1.2
4,019,132 + Psest_3847 0.35 +0.2
4,019,133 - Psest_3847 0.36 +0.6
4,019,144 + Psest_3847 0.36 +2.6
4,019,144 + Psest_3847 0.36 -1.0
4,019,144 + Psest_3847 0.36 +1.6
4,019,157 - Psest_3847 0.37 +1.9
4,019,234 + Psest_3847 0.43 +1.0
4,019,234 + Psest_3847 0.43 +0.7
4,019,235 - Psest_3847 0.43 +0.4
4,019,235 - Psest_3847 0.43 +3.4
4,019,435 + Psest_3847 0.58 +2.3
4,019,435 + Psest_3847 0.58 +0.6
4,019,435 + Psest_3847 0.58 +1.4
4,019,435 + Psest_3847 0.58 +1.2
4,019,436 - Psest_3847 0.58 -1.0
4,019,436 - Psest_3847 0.58 -1.3
4,019,436 - Psest_3847 0.58 +0.3
4,019,436 - Psest_3847 0.58 +1.1
4,019,436 - Psest_3847 0.58 +0.8
4,019,453 + Psest_3847 0.59 -0.1
4,019,474 + Psest_3847 0.61 -0.5
4,019,474 + Psest_3847 0.61 +1.1
4,019,474 + Psest_3847 0.61 -0.7
4,019,474 + Psest_3847 0.61 -0.6
4,019,475 - Psest_3847 0.61 +1.2
4,019,475 - Psest_3847 0.61 +2.0
4,019,719 + Psest_3847 0.79 +0.5
4,019,719 + Psest_3847 0.79 -0.5
4,019,720 - Psest_3847 0.79 +1.6
4,019,762 + Psest_3847 0.82 +0.9
4,019,763 - Psest_3847 0.82 +0.3
4,019,873 + -1.3
4,019,874 - +2.9
4,019,874 - -0.0
4,020,010 - -3.0
4,020,029 - -0.4
4,020,044 + +0.8
4,020,105 - +0.6
4,020,114 + -0.7
4,020,114 + +1.9
4,020,115 - +0.4
4,020,115 - -0.8
4,020,115 - -0.1
4,020,115 - +2.1
4,020,115 - +0.7
4,020,115 - -0.7
4,020,317 + Psest_3848 0.17 -0.9
4,020,318 - Psest_3848 0.17 -1.7
4,020,318 - Psest_3848 0.17 -0.2
4,020,318 - Psest_3848 0.17 +0.7
4,020,318 - Psest_3848 0.17 -0.2
4,020,374 + Psest_3848 0.24 +1.0
4,020,374 + Psest_3848 0.24 -0.5
4,020,375 - Psest_3848 0.24 +1.6
4,020,375 - Psest_3848 0.24 +0.6
4,020,375 - Psest_3848 0.24 +0.0
4,020,377 + Psest_3848 0.24 -1.2
4,020,377 + Psest_3848 0.24 -0.2
4,020,377 + Psest_3848 0.24 -0.1
4,020,377 + Psest_3848 0.24 +1.0
4,020,377 + Psest_3848 0.24 -2.3
4,020,377 + Psest_3848 0.24 -1.7
4,020,377 + Psest_3848 0.24 +0.4
4,020,378 - Psest_3848 0.25 -1.1
4,020,378 - Psest_3848 0.25 +0.0
4,020,378 - Psest_3848 0.25 -0.9
4,020,378 - Psest_3848 0.25 -2.8
4,020,378 - Psest_3848 0.25 +0.1
4,020,378 - Psest_3848 0.25 -1.0
4,020,378 - Psest_3848 0.25 -2.4
4,020,378 - Psest_3848 0.25 +1.6
4,020,378 - Psest_3848 0.25 +0.4
4,020,419 + Psest_3848 0.30 +0.8
4,020,420 - Psest_3848 0.30 +1.1
4,020,467 + Psest_3848 0.36 -0.6
4,020,467 + Psest_3848 0.36 -0.8
4,020,467 + Psest_3848 0.36 -1.8
4,020,467 + Psest_3848 0.36 +3.2
4,020,467 + Psest_3848 0.36 +0.4
4,020,467 + Psest_3848 0.36 -0.7
4,020,467 + Psest_3848 0.36 +1.7
4,020,467 + Psest_3848 0.36 +2.0
4,020,467 + Psest_3848 0.36 +0.3
4,020,467 + Psest_3848 0.36 +0.1
4,020,467 + Psest_3848 0.36 -2.2
4,020,467 + Psest_3848 0.36 -0.1
4,020,467 + Psest_3848 0.36 -1.7
4,020,467 + Psest_3848 0.36 -1.0
4,020,468 - Psest_3848 0.36 -1.0
4,020,468 - Psest_3848 0.36 +1.8
4,020,468 - Psest_3848 0.36 -2.2
4,020,468 - Psest_3848 0.36 -0.7
4,020,468 - Psest_3848 0.36 -1.7
4,020,468 - Psest_3848 0.36 -0.4
4,020,468 - Psest_3848 0.36 +1.1
4,020,468 - Psest_3848 0.36 +1.1
4,020,468 - Psest_3848 0.36 -1.1
4,020,468 - Psest_3848 0.36 +1.1
4,020,468 - Psest_3848 0.36 -1.4
4,020,468 - Psest_3848 0.36 +0.3
4,020,468 - Psest_3848 0.36 -2.0
4,020,468 - Psest_3848 0.36 -0.9
4,020,468 - Psest_3848 0.36 -3.0
4,020,468 - Psest_3848 0.36 +0.7
4,020,468 - Psest_3848 0.36 -1.1
4,020,527 + Psest_3848 0.44 -0.9
4,020,527 + Psest_3848 0.44 -1.0
4,020,527 + Psest_3848 0.44 +0.1
4,020,527 + Psest_3848 0.44 -0.4
4,020,527 + Psest_3848 0.44 -0.7
4,020,527 + Psest_3848 0.44 -1.2
4,020,527 + Psest_3848 0.44 +1.1
4,020,527 + Psest_3848 0.44 -0.8
4,020,527 + Psest_3848 0.44 -3.2
4,020,527 + Psest_3848 0.44 +0.6
4,020,527 + Psest_3848 0.44 -1.1
4,020,527 + Psest_3848 0.44 -1.6
4,020,527 + Psest_3848 0.44 -0.9
4,020,527 + Psest_3848 0.44 -0.6
4,020,527 + Psest_3848 0.44 -2.3
4,020,528 - Psest_3848 0.44 +2.3
4,020,528 - Psest_3848 0.44 +0.6
4,020,528 - Psest_3848 0.44 -1.3
4,020,528 - Psest_3848 0.44 -2.4
4,020,528 - Psest_3848 0.44 -1.9
4,020,528 - Psest_3848 0.44 -2.7
4,020,528 - Psest_3848 0.44 -3.0
4,020,528 - Psest_3848 0.44 -0.0
4,020,528 - Psest_3848 0.44 +1.9
4,020,528 - Psest_3848 0.44 -1.0
4,020,528 - Psest_3848 0.44 +0.4
4,020,528 - Psest_3848 0.44 -0.1
4,020,528 - Psest_3848 0.44 -0.4
4,020,528 - Psest_3848 0.44 +1.2
4,020,656 + Psest_3848 0.61 +1.0
4,020,656 + Psest_3848 0.61 +0.2
4,020,662 + Psest_3848 0.62 +0.2
4,020,662 + Psest_3848 0.62 -2.7
4,020,662 + Psest_3848 0.62 -1.4
4,020,662 + Psest_3848 0.62 +1.3
4,020,662 + Psest_3848 0.62 +1.1
4,020,662 + Psest_3848 0.62 +0.6
4,020,662 + Psest_3848 0.62 -0.7
4,020,662 + Psest_3848 0.62 -0.7
4,020,663 - Psest_3848 0.62 +0.5
4,020,677 + Psest_3848 0.64 +0.7
4,020,677 + Psest_3848 0.64 +1.5
4,020,677 + Psest_3848 0.64 +0.1
4,020,684 + Psest_3848 0.65 +0.0
4,020,848 + Psest_3848 0.86 -0.6
4,020,848 + Psest_3848 0.86 +1.4
4,020,849 - Psest_3848 0.86 -0.5
4,020,849 - Psest_3848 0.86 -0.5
4,020,851 + Psest_3848 0.87 -0.8
4,020,851 + Psest_3848 0.87 +1.2
4,020,851 + Psest_3848 0.87 -0.4
4,020,851 + Psest_3848 0.87 +1.2
4,020,851 + Psest_3848 0.87 +0.9
4,020,851 + Psest_3848 0.87 -0.6
4,020,851 + Psest_3848 0.87 +1.0
4,020,851 + Psest_3848 0.87 -2.1
4,020,851 + Psest_3848 0.87 -2.1
4,020,852 - Psest_3848 0.87 -0.4
4,020,852 - Psest_3848 0.87 +1.2
4,020,852 - Psest_3848 0.87 -0.5
4,020,852 - Psest_3848 0.87 -2.0
4,020,852 - Psest_3848 0.87 +0.9
4,020,852 - Psest_3848 0.87 -3.6
4,020,942 + +1.0
4,020,950 + +0.4
4,020,950 + -0.6
4,020,950 + +0.3
4,020,950 + +0.7
4,020,950 + -0.4
4,020,950 + +0.7
4,020,950 + -1.9
4,020,951 - -0.4
4,020,951 - +0.6

Or see this region's nucleotide sequence