Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3700

Experiment: D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3699 and Psest_3700 are separated by 10 nucleotidesPsest_3700 and Psest_3701 overlap by 4 nucleotides Psest_3699: Psest_3699 - Dehydrogenases (flavoproteins), at 3,863,619 to 3,864,869 _3699 Psest_3700: Psest_3700 - hypothetical protein, at 3,864,880 to 3,865,386 _3700 Psest_3701: Psest_3701 - 3-oxoacyl-(acyl-carrier-protein) synthase, at 3,865,383 to 3,866,576 _3701 Position (kb) 3864 3865 3866Strain fitness (log2 ratio) -2 -1 0 1 2at 3863.928 kb on + strand, within Psest_3699at 3863.928 kb on + strand, within Psest_3699at 3863.928 kb on + strand, within Psest_3699at 3863.929 kb on - strand, within Psest_3699at 3863.929 kb on - strand, within Psest_3699at 3863.929 kb on - strand, within Psest_3699at 3864.001 kb on - strand, within Psest_3699at 3864.665 kb on + strand, within Psest_3699at 3864.678 kb on + strand, within Psest_3699at 3864.678 kb on + strand, within Psest_3699at 3864.678 kb on + strand, within Psest_3699at 3864.678 kb on + strand, within Psest_3699at 3864.678 kb on + strand, within Psest_3699at 3864.679 kb on - strand, within Psest_3699at 3864.679 kb on - strand, within Psest_3699at 3864.679 kb on - strand, within Psest_3699at 3864.679 kb on - strand, within Psest_3699at 3864.679 kb on - strand, within Psest_3699at 3864.679 kb on - strand, within Psest_3699at 3864.694 kb on - strand, within Psest_3699at 3864.720 kb on + strand, within Psest_3699at 3864.720 kb on + strand, within Psest_3699at 3864.723 kb on + strand, within Psest_3699at 3864.723 kb on + strand, within Psest_3699at 3864.724 kb on - strand, within Psest_3699at 3864.802 kb on - strandat 3864.802 kb on - strandat 3865.295 kb on - strand, within Psest_3700at 3865.343 kb on - strandat 3865.343 kb on - strandat 3865.392 kb on + strandat 3865.689 kb on - strand, within Psest_3701at 3865.834 kb on - strand, within Psest_3701at 3865.834 kb on - strand, within Psest_3701at 3866.129 kb on + strand, within Psest_3701at 3866.130 kb on - strand, within Psest_3701at 3866.130 kb on - strand, within Psest_3701at 3866.130 kb on - strand, within Psest_3701at 3866.130 kb on - strand, within Psest_3701at 3866.221 kb on - strand, within Psest_3701

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.032 mg/ml
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3,863,928 + Psest_3699 0.25 -1.1
3,863,928 + Psest_3699 0.25 +0.5
3,863,928 + Psest_3699 0.25 -1.4
3,863,929 - Psest_3699 0.25 -0.3
3,863,929 - Psest_3699 0.25 -2.3
3,863,929 - Psest_3699 0.25 +0.3
3,864,001 - Psest_3699 0.31 +0.7
3,864,665 + Psest_3699 0.84 -0.1
3,864,678 + Psest_3699 0.85 -0.7
3,864,678 + Psest_3699 0.85 +2.4
3,864,678 + Psest_3699 0.85 +0.1
3,864,678 + Psest_3699 0.85 -1.4
3,864,678 + Psest_3699 0.85 -0.2
3,864,679 - Psest_3699 0.85 +0.1
3,864,679 - Psest_3699 0.85 +0.7
3,864,679 - Psest_3699 0.85 -2.3
3,864,679 - Psest_3699 0.85 -0.4
3,864,679 - Psest_3699 0.85 +1.8
3,864,679 - Psest_3699 0.85 +1.1
3,864,694 - Psest_3699 0.86 -0.3
3,864,720 + Psest_3699 0.88 -1.4
3,864,720 + Psest_3699 0.88 +2.1
3,864,723 + Psest_3699 0.88 +1.6
3,864,723 + Psest_3699 0.88 -1.0
3,864,724 - Psest_3699 0.88 +0.8
3,864,802 - +0.8
3,864,802 - -0.1
3,865,295 - Psest_3700 0.82 +1.3
3,865,343 - -0.9
3,865,343 - -0.8
3,865,392 + -0.1
3,865,689 - Psest_3701 0.26 +1.0
3,865,834 - Psest_3701 0.38 +2.1
3,865,834 - Psest_3701 0.38 +0.2
3,866,129 + Psest_3701 0.62 +0.0
3,866,130 - Psest_3701 0.63 +0.7
3,866,130 - Psest_3701 0.63 -0.8
3,866,130 - Psest_3701 0.63 +0.2
3,866,130 - Psest_3701 0.63 -1.4
3,866,221 - Psest_3701 0.70 +0.3

Or see this region's nucleotide sequence