Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3093

Experiment: D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3091 and Psest_3092 overlap by 8 nucleotidesPsest_3092 and Psest_3093 overlap by 4 nucleotidesPsest_3093 and Psest_3094 are separated by 91 nucleotidesPsest_3094 and Psest_3095 are separated by 1 nucleotides Psest_3091: Psest_3091 - GTP-binding protein Era, at 3,270,069 to 3,270,980 _3091 Psest_3092: Psest_3092 - ribonuclease III, bacterial, at 3,270,973 to 3,271,662 _3092 Psest_3093: Psest_3093 - hypothetical protein, at 3,271,659 to 3,272,036 _3093 Psest_3094: Psest_3094 - signal peptidase I, bacterial type, at 3,272,128 to 3,272,982 _3094 Psest_3095: Psest_3095 - GTP-binding protein LepA, at 3,272,984 to 3,274,783 _3095 Position (kb) 3271 3272 3273Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 3271.296 kb on - strand, within Psest_3092at 3271.296 kb on - strand, within Psest_3092at 3271.576 kb on - strand, within Psest_3092at 3271.576 kb on - strand, within Psest_3092at 3271.576 kb on - strand, within Psest_3092at 3271.576 kb on - strand, within Psest_3092at 3271.672 kb on - strandat 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.837 kb on - strand, within Psest_3093at 3271.847 kb on - strand, within Psest_3093at 3271.922 kb on - strand, within Psest_3093at 3271.922 kb on - strand, within Psest_3093at 3271.931 kb on - strand, within Psest_3093at 3272.047 kb on - strandat 3272.047 kb on - strandat 3272.047 kb on - strandat 3272.085 kb on - strandat 3272.085 kb on - strandat 3272.085 kb on - strandat 3272.085 kb on - strandat 3272.085 kb on - strandat 3272.085 kb on - strandat 3272.085 kb on - strandat 3272.085 kb on - strandat 3272.085 kb on - strandat 3272.087 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.032 mg/ml
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3,271,296 - Psest_3092 0.47 -1.0
3,271,296 - Psest_3092 0.47 -0.1
3,271,576 - Psest_3092 0.87 -0.4
3,271,576 - Psest_3092 0.87 -0.4
3,271,576 - Psest_3092 0.87 -1.9
3,271,576 - Psest_3092 0.87 -0.4
3,271,672 - -4.2
3,271,837 - Psest_3093 0.47 +1.7
3,271,837 - Psest_3093 0.47 -1.1
3,271,837 - Psest_3093 0.47 +1.3
3,271,837 - Psest_3093 0.47 +1.2
3,271,837 - Psest_3093 0.47 +0.0
3,271,837 - Psest_3093 0.47 +0.2
3,271,837 - Psest_3093 0.47 +5.3
3,271,837 - Psest_3093 0.47 +2.4
3,271,837 - Psest_3093 0.47 +0.6
3,271,837 - Psest_3093 0.47 +0.3
3,271,837 - Psest_3093 0.47 +3.1
3,271,837 - Psest_3093 0.47 +1.3
3,271,837 - Psest_3093 0.47 -0.4
3,271,837 - Psest_3093 0.47 +0.4
3,271,847 - Psest_3093 0.50 +0.3
3,271,922 - Psest_3093 0.70 +1.6
3,271,922 - Psest_3093 0.70 +0.1
3,271,931 - Psest_3093 0.72 -0.0
3,272,047 - -0.1
3,272,047 - +1.4
3,272,047 - +0.5
3,272,085 - +0.9
3,272,085 - +1.5
3,272,085 - -1.2
3,272,085 - +1.9
3,272,085 - +2.0
3,272,085 - +0.8
3,272,085 - +0.7
3,272,085 - +0.9
3,272,085 - -1.2
3,272,087 - +0.3

Or see this region's nucleotide sequence