Experiment: D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2980 and Psest_2981 are separated by 22 nucleotides Psest_2981 and Psest_2982 are separated by 140 nucleotides
Psest_2980: Psest_2980 - oxaloacetate decarboxylase alpha subunit, at 3,171,704 to 3,173,482
_2980
Psest_2981: Psest_2981 - sodium pump decarboxylases, gamma subunit, at 3,173,505 to 3,173,747
_2981
Psest_2982: Psest_2982 - Mg2+ transporter (mgtE), at 3,173,888 to 3,175,324
_2982
Position (kb)
3173
3174 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3172.665 kb on + strand, within Psest_2980 at 3172.665 kb on + strand, within Psest_2980 at 3172.665 kb on + strand, within Psest_2980 at 3172.665 kb on + strand, within Psest_2980 at 3172.665 kb on + strand, within Psest_2980 at 3172.666 kb on - strand, within Psest_2980 at 3172.666 kb on - strand, within Psest_2980 at 3172.666 kb on - strand, within Psest_2980 at 3172.666 kb on - strand, within Psest_2980 at 3172.705 kb on + strand, within Psest_2980 at 3172.761 kb on + strand, within Psest_2980 at 3172.761 kb on + strand, within Psest_2980 at 3172.761 kb on + strand, within Psest_2980 at 3172.762 kb on - strand, within Psest_2980 at 3172.783 kb on + strand, within Psest_2980 at 3172.783 kb on + strand, within Psest_2980 at 3172.867 kb on + strand, within Psest_2980 at 3172.867 kb on + strand, within Psest_2980 at 3172.921 kb on + strand, within Psest_2980 at 3172.922 kb on - strand, within Psest_2980 at 3172.922 kb on - strand, within Psest_2980 at 3172.923 kb on + strand, within Psest_2980 at 3172.923 kb on + strand, within Psest_2980 at 3172.923 kb on + strand, within Psest_2980 at 3172.923 kb on + strand, within Psest_2980 at 3172.924 kb on - strand, within Psest_2980 at 3172.924 kb on - strand, within Psest_2980 at 3172.924 kb on - strand, within Psest_2980 at 3172.924 kb on - strand, within Psest_2980 at 3173.037 kb on + strand, within Psest_2980 at 3173.255 kb on - strand, within Psest_2980 at 3173.309 kb on - strand at 3173.309 kb on - strand at 3173.470 kb on + strand at 3173.638 kb on + strand, within Psest_2981 at 3173.638 kb on + strand, within Psest_2981 at 3173.638 kb on + strand, within Psest_2981 at 3173.796 kb on - strand at 3173.889 kb on + strand at 3173.890 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.032 mg/ml remove 3,172,665 + Psest_2980 0.54 -0.9 3,172,665 + Psest_2980 0.54 -1.6 3,172,665 + Psest_2980 0.54 -1.0 3,172,665 + Psest_2980 0.54 -1.3 3,172,665 + Psest_2980 0.54 -0.7 3,172,666 - Psest_2980 0.54 -1.2 3,172,666 - Psest_2980 0.54 +0.7 3,172,666 - Psest_2980 0.54 -0.4 3,172,666 - Psest_2980 0.54 -1.2 3,172,705 + Psest_2980 0.56 -0.3 3,172,761 + Psest_2980 0.59 -0.0 3,172,761 + Psest_2980 0.59 +1.6 3,172,761 + Psest_2980 0.59 +0.8 3,172,762 - Psest_2980 0.59 -0.9 3,172,783 + Psest_2980 0.61 +0.2 3,172,783 + Psest_2980 0.61 +1.0 3,172,867 + Psest_2980 0.65 -0.3 3,172,867 + Psest_2980 0.65 -0.8 3,172,921 + Psest_2980 0.68 -1.9 3,172,922 - Psest_2980 0.68 -0.4 3,172,922 - Psest_2980 0.68 -1.0 3,172,923 + Psest_2980 0.69 -1.8 3,172,923 + Psest_2980 0.69 -1.7 3,172,923 + Psest_2980 0.69 +1.2 3,172,923 + Psest_2980 0.69 -0.0 3,172,924 - Psest_2980 0.69 +3.6 3,172,924 - Psest_2980 0.69 -2.7 3,172,924 - Psest_2980 0.69 +0.3 3,172,924 - Psest_2980 0.69 +0.6 3,173,037 + Psest_2980 0.75 -1.1 3,173,255 - Psest_2980 0.87 +1.0 3,173,309 - -0.0 3,173,309 - +0.6 3,173,470 + -0.7 3,173,638 + Psest_2981 0.55 -1.8 3,173,638 + Psest_2981 0.55 +1.4 3,173,638 + Psest_2981 0.55 -0.0 3,173,796 - -0.8 3,173,889 + -2.1 3,173,890 - +1.0
Or see this region's nucleotide sequence