Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2227

Experiment: D-Cycloserine 0.032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_2226 and Psest_2227 are separated by 40 nucleotidesPsest_2227 and Psest_2228 overlap by 1 nucleotides Psest_2226: Psest_2226 - Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily, at 2,374,969 to 2,377,005 _2226 Psest_2227: Psest_2227 - hypothetical protein, at 2,377,046 to 2,377,663 _2227 Psest_2228: Psest_2228 - hypothetical protein, at 2,377,663 to 2,378,958 _2228 Position (kb) 2377 2378Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2376.240 kb on - strand, within Psest_2226at 2376.240 kb on - strand, within Psest_2226at 2376.296 kb on + strand, within Psest_2226at 2376.662 kb on + strand, within Psest_2226at 2376.663 kb on - strand, within Psest_2226at 2376.663 kb on - strand, within Psest_2226at 2376.668 kb on + strand, within Psest_2226at 2376.669 kb on - strand, within Psest_2226at 2376.689 kb on + strand, within Psest_2226at 2376.689 kb on + strand, within Psest_2226at 2376.689 kb on + strand, within Psest_2226at 2376.689 kb on + strand, within Psest_2226at 2376.689 kb on + strand, within Psest_2226at 2376.690 kb on - strand, within Psest_2226at 2376.690 kb on - strand, within Psest_2226at 2376.690 kb on - strand, within Psest_2226at 2376.690 kb on - strand, within Psest_2226at 2376.881 kb on - strandat 2376.975 kb on - strandat 2377.019 kb on + strandat 2377.020 kb on - strandat 2377.031 kb on - strandat 2377.109 kb on - strand, within Psest_2227at 2377.109 kb on - strand, within Psest_2227at 2377.176 kb on + strand, within Psest_2227at 2377.177 kb on - strand, within Psest_2227at 2377.177 kb on - strand, within Psest_2227at 2377.177 kb on - strand, within Psest_2227at 2377.177 kb on - strand, within Psest_2227at 2377.177 kb on - strand, within Psest_2227at 2377.180 kb on + strand, within Psest_2227at 2377.509 kb on + strand, within Psest_2227at 2377.509 kb on + strand, within Psest_2227at 2377.509 kb on + strand, within Psest_2227at 2377.509 kb on + strand, within Psest_2227at 2377.509 kb on + strand, within Psest_2227at 2377.509 kb on + strand, within Psest_2227at 2377.510 kb on - strand, within Psest_2227at 2377.510 kb on - strand, within Psest_2227at 2377.510 kb on - strand, within Psest_2227at 2377.510 kb on - strand, within Psest_2227at 2377.510 kb on - strand, within Psest_2227at 2377.510 kb on - strand, within Psest_2227at 2377.510 kb on - strand, within Psest_2227at 2377.510 kb on - strand, within Psest_2227at 2377.562 kb on + strand, within Psest_2227at 2377.563 kb on - strand, within Psest_2227at 2377.730 kb on + strandat 2377.770 kb on - strandat 2378.065 kb on - strand, within Psest_2228at 2378.095 kb on - strand, within Psest_2228at 2378.225 kb on - strand, within Psest_2228at 2378.297 kb on + strand, within Psest_2228at 2378.297 kb on + strand, within Psest_2228at 2378.297 kb on + strand, within Psest_2228at 2378.297 kb on + strand, within Psest_2228at 2378.297 kb on + strand, within Psest_2228at 2378.297 kb on + strand, within Psest_2228at 2378.297 kb on + strand, within Psest_2228at 2378.297 kb on + strand, within Psest_2228at 2378.297 kb on + strand, within Psest_2228at 2378.298 kb on - strand, within Psest_2228at 2378.298 kb on - strand, within Psest_2228at 2378.298 kb on - strand, within Psest_2228at 2378.298 kb on - strand, within Psest_2228at 2378.369 kb on - strand, within Psest_2228at 2378.397 kb on + strand, within Psest_2228at 2378.462 kb on + strand, within Psest_2228at 2378.462 kb on + strand, within Psest_2228at 2378.462 kb on + strand, within Psest_2228at 2378.462 kb on + strand, within Psest_2228at 2378.463 kb on - strand, within Psest_2228at 2378.463 kb on - strand, within Psest_2228at 2378.513 kb on + strand, within Psest_2228at 2378.513 kb on + strand, within Psest_2228at 2378.513 kb on + strand, within Psest_2228at 2378.513 kb on + strand, within Psest_2228at 2378.514 kb on - strand, within Psest_2228at 2378.514 kb on - strand, within Psest_2228at 2378.514 kb on - strand, within Psest_2228at 2378.514 kb on - strand, within Psest_2228at 2378.572 kb on + strand, within Psest_2228at 2378.572 kb on + strand, within Psest_2228at 2378.572 kb on + strand, within Psest_2228at 2378.576 kb on + strand, within Psest_2228at 2378.576 kb on + strand, within Psest_2228at 2378.576 kb on + strand, within Psest_2228at 2378.576 kb on + strand, within Psest_2228at 2378.577 kb on - strand, within Psest_2228at 2378.577 kb on - strand, within Psest_2228at 2378.577 kb on - strand, within Psest_2228at 2378.577 kb on - strand, within Psest_2228at 2378.577 kb on - strand, within Psest_2228

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.032 mg/ml
remove
2,376,240 - Psest_2226 0.62 -1.9
2,376,240 - Psest_2226 0.62 -2.4
2,376,296 + Psest_2226 0.65 -0.3
2,376,662 + Psest_2226 0.83 +1.8
2,376,663 - Psest_2226 0.83 -2.0
2,376,663 - Psest_2226 0.83 +1.3
2,376,668 + Psest_2226 0.83 -0.5
2,376,669 - Psest_2226 0.83 +0.3
2,376,689 + Psest_2226 0.84 +1.0
2,376,689 + Psest_2226 0.84 -2.4
2,376,689 + Psest_2226 0.84 -0.3
2,376,689 + Psest_2226 0.84 +1.9
2,376,689 + Psest_2226 0.84 +0.2
2,376,690 - Psest_2226 0.84 +0.3
2,376,690 - Psest_2226 0.84 +0.6
2,376,690 - Psest_2226 0.84 -2.5
2,376,690 - Psest_2226 0.84 -0.9
2,376,881 - +1.9
2,376,975 - -2.3
2,377,019 + +0.5
2,377,020 - +1.1
2,377,031 - -0.8
2,377,109 - Psest_2227 0.10 +3.7
2,377,109 - Psest_2227 0.10 -1.4
2,377,176 + Psest_2227 0.21 -1.1
2,377,177 - Psest_2227 0.21 -1.0
2,377,177 - Psest_2227 0.21 -1.1
2,377,177 - Psest_2227 0.21 +0.3
2,377,177 - Psest_2227 0.21 +2.6
2,377,177 - Psest_2227 0.21 +0.9
2,377,180 + Psest_2227 0.22 -1.0
2,377,509 + Psest_2227 0.75 +2.1
2,377,509 + Psest_2227 0.75 -2.3
2,377,509 + Psest_2227 0.75 +0.5
2,377,509 + Psest_2227 0.75 +1.3
2,377,509 + Psest_2227 0.75 -0.9
2,377,509 + Psest_2227 0.75 -1.0
2,377,510 - Psest_2227 0.75 +1.9
2,377,510 - Psest_2227 0.75 +1.7
2,377,510 - Psest_2227 0.75 +2.6
2,377,510 - Psest_2227 0.75 +2.2
2,377,510 - Psest_2227 0.75 -0.1
2,377,510 - Psest_2227 0.75 +0.4
2,377,510 - Psest_2227 0.75 +0.4
2,377,510 - Psest_2227 0.75 +2.4
2,377,562 + Psest_2227 0.83 +0.2
2,377,563 - Psest_2227 0.84 -1.1
2,377,730 + -0.4
2,377,770 - -1.9
2,378,065 - Psest_2228 0.31 +0.7
2,378,095 - Psest_2228 0.33 +1.0
2,378,225 - Psest_2228 0.43 -0.7
2,378,297 + Psest_2228 0.49 -0.9
2,378,297 + Psest_2228 0.49 +0.0
2,378,297 + Psest_2228 0.49 -0.3
2,378,297 + Psest_2228 0.49 +1.4
2,378,297 + Psest_2228 0.49 -0.4
2,378,297 + Psest_2228 0.49 -1.2
2,378,297 + Psest_2228 0.49 -1.9
2,378,297 + Psest_2228 0.49 -0.3
2,378,297 + Psest_2228 0.49 -0.8
2,378,298 - Psest_2228 0.49 -2.4
2,378,298 - Psest_2228 0.49 +1.5
2,378,298 - Psest_2228 0.49 +0.7
2,378,298 - Psest_2228 0.49 +1.7
2,378,369 - Psest_2228 0.54 -1.1
2,378,397 + Psest_2228 0.57 -2.1
2,378,462 + Psest_2228 0.62 +2.1
2,378,462 + Psest_2228 0.62 -1.1
2,378,462 + Psest_2228 0.62 +2.3
2,378,462 + Psest_2228 0.62 -0.4
2,378,463 - Psest_2228 0.62 -2.8
2,378,463 - Psest_2228 0.62 -0.5
2,378,513 + Psest_2228 0.66 +2.1
2,378,513 + Psest_2228 0.66 -0.8
2,378,513 + Psest_2228 0.66 +0.8
2,378,513 + Psest_2228 0.66 +0.4
2,378,514 - Psest_2228 0.66 -0.8
2,378,514 - Psest_2228 0.66 +0.5
2,378,514 - Psest_2228 0.66 +1.4
2,378,514 - Psest_2228 0.66 +0.5
2,378,572 + Psest_2228 0.70 -0.8
2,378,572 + Psest_2228 0.70 -1.3
2,378,572 + Psest_2228 0.70 +1.4
2,378,576 + Psest_2228 0.70 +1.2
2,378,576 + Psest_2228 0.70 +0.5
2,378,576 + Psest_2228 0.70 +0.2
2,378,576 + Psest_2228 0.70 -1.3
2,378,577 - Psest_2228 0.71 -2.1
2,378,577 - Psest_2228 0.71 -0.7
2,378,577 - Psest_2228 0.71 +1.4
2,378,577 - Psest_2228 0.71 -0.1
2,378,577 - Psest_2228 0.71 -2.8

Or see this region's nucleotide sequence