Experiment: D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1465 and Psest_1466 are separated by 43 nucleotides Psest_1466 and Psest_1467 are separated by 130 nucleotides Psest_1467 and Psest_1468 are separated by 32 nucleotides Psest_1468 and Psest_1469 are separated by 14 nucleotides
Psest_1465: Psest_1465 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 1,572,876 to 1,573,910
_1465
Psest_1466: Psest_1466 - transcriptional regulator, Spx/MgsR family, at 1,573,954 to 1,574,325
_1466
Psest_1467: Psest_1467 - Thioredoxin., at 1,574,456 to 1,574,881
_1467
Psest_1468: Psest_1468 - hypothetical protein, at 1,574,914 to 1,575,159
_1468
Psest_1469: Psest_1469 - hypothetical protein, at 1,575,174 to 1,575,335
_1469
Position (kb)
1573
1574
1575 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1573.983 kb on - strand at 1573.983 kb on - strand at 1574.014 kb on - strand, within Psest_1466 at 1574.030 kb on - strand, within Psest_1466 at 1574.198 kb on - strand, within Psest_1466 at 1574.214 kb on - strand, within Psest_1466 at 1574.214 kb on - strand, within Psest_1466 at 1574.257 kb on - strand, within Psest_1466 at 1574.326 kb on - strand at 1574.326 kb on - strand at 1574.368 kb on - strand at 1574.766 kb on + strand, within Psest_1467 at 1574.766 kb on + strand, within Psest_1467 at 1574.766 kb on + strand, within Psest_1467 at 1574.766 kb on + strand, within Psest_1467 at 1574.766 kb on + strand, within Psest_1467 at 1574.767 kb on - strand, within Psest_1467 at 1574.767 kb on - strand, within Psest_1467 at 1574.767 kb on - strand, within Psest_1467 at 1574.777 kb on + strand, within Psest_1467 at 1574.777 kb on + strand, within Psest_1467 at 1574.777 kb on + strand, within Psest_1467 at 1574.777 kb on + strand, within Psest_1467 at 1574.777 kb on + strand, within Psest_1467 at 1574.777 kb on + strand, within Psest_1467 at 1574.777 kb on + strand, within Psest_1467 at 1574.777 kb on + strand, within Psest_1467 at 1574.777 kb on + strand, within Psest_1467 at 1574.778 kb on - strand, within Psest_1467 at 1574.778 kb on - strand, within Psest_1467 at 1574.778 kb on - strand, within Psest_1467 at 1574.802 kb on + strand, within Psest_1467 at 1574.803 kb on - strand, within Psest_1467 at 1574.803 kb on - strand, within Psest_1467 at 1574.861 kb on + strand at 1574.861 kb on + strand at 1574.861 kb on + strand at 1574.862 kb on - strand at 1574.862 kb on - strand at 1574.912 kb on + strand at 1574.912 kb on + strand at 1574.912 kb on + strand at 1574.913 kb on - strand at 1575.029 kb on + strand, within Psest_1468 at 1575.102 kb on + strand, within Psest_1468 at 1575.110 kb on + strand, within Psest_1468 at 1575.110 kb on + strand, within Psest_1468 at 1575.173 kb on + strand at 1575.173 kb on + strand at 1575.174 kb on - strand at 1575.174 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.032 mg/ml remove 1,573,983 - -0.0 1,573,983 - +0.2 1,574,014 - Psest_1466 0.16 -2.0 1,574,030 - Psest_1466 0.20 -1.5 1,574,198 - Psest_1466 0.66 -2.3 1,574,214 - Psest_1466 0.70 -0.5 1,574,214 - Psest_1466 0.70 -1.5 1,574,257 - Psest_1466 0.81 -2.4 1,574,326 - -0.3 1,574,326 - -0.7 1,574,368 - -0.3 1,574,766 + Psest_1467 0.73 +1.1 1,574,766 + Psest_1467 0.73 +0.8 1,574,766 + Psest_1467 0.73 -0.9 1,574,766 + Psest_1467 0.73 -1.4 1,574,766 + Psest_1467 0.73 +0.6 1,574,767 - Psest_1467 0.73 -2.4 1,574,767 - Psest_1467 0.73 -1.3 1,574,767 - Psest_1467 0.73 -1.2 1,574,777 + Psest_1467 0.75 +0.6 1,574,777 + Psest_1467 0.75 -0.0 1,574,777 + Psest_1467 0.75 -1.3 1,574,777 + Psest_1467 0.75 +0.9 1,574,777 + Psest_1467 0.75 -0.7 1,574,777 + Psest_1467 0.75 +2.6 1,574,777 + Psest_1467 0.75 +0.3 1,574,777 + Psest_1467 0.75 -1.3 1,574,777 + Psest_1467 0.75 -0.6 1,574,778 - Psest_1467 0.76 -0.1 1,574,778 - Psest_1467 0.76 +0.1 1,574,778 - Psest_1467 0.76 +0.9 1,574,802 + Psest_1467 0.81 -1.1 1,574,803 - Psest_1467 0.81 +1.8 1,574,803 - Psest_1467 0.81 -2.8 1,574,861 + -1.0 1,574,861 + +0.8 1,574,861 + +0.4 1,574,862 - +0.7 1,574,862 - -0.5 1,574,912 + +0.6 1,574,912 + -0.9 1,574,912 + -2.3 1,574,913 - +1.6 1,575,029 + Psest_1468 0.47 -0.4 1,575,102 + Psest_1468 0.76 +0.3 1,575,110 + Psest_1468 0.80 +0.3 1,575,110 + Psest_1468 0.80 -0.3 1,575,173 + -2.1 1,575,173 + -1.3 1,575,174 - -1.3 1,575,174 - +2.0
Or see this region's nucleotide sequence