Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1365

Experiment: D-Cycloserine 0.032 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.032 mg/ml
1,473,688	+		Psest_1363	0.89	+0.5
1,473,688	+		Psest_1363	0.89	+0.3
1,473,688	+		Psest_1363	0.89	-0.8
1,473,689	-		Psest_1363	0.89	-0.1
1,473,689	-		Psest_1363	0.89	+1.1
1,473,689	-		Psest_1363	0.89	-1.0
1,473,733	+				-0.9
1,473,733	+				-2.8
1,473,733	+				-2.4
1,473,733	+				-0.3
1,473,733	+				+3.8
1,473,733	+				+0.5
1,473,733	+				-0.9
1,473,733	+				-0.5
1,473,733	+				+1.5
1,473,733	+				+1.0
1,473,733	+				+1.9
1,473,734	-				-3.2
1,473,868	-				+0.7
1,473,868	-				-0.0
1,473,884	+				+1.0
1,474,141	-				-0.7
1,474,176	+		Psest_1364	0.18	-0.4
1,474,176	+		Psest_1364	0.18	+0.8
1,474,176	+		Psest_1364	0.18	-1.1
1,474,176	+		Psest_1364	0.18	-0.5
1,474,176	+		Psest_1364	0.18	-0.3
1,474,177	-		Psest_1364	0.18	-1.0
1,474,177	-		Psest_1364	0.18	-2.7
1,474,177	-		Psest_1364	0.18	+0.5
1,474,177	-		Psest_1364	0.18	-2.5
1,474,177	-		Psest_1364	0.18	+1.8
1,474,187	+		Psest_1364	0.21	+0.7
1,474,187	+		Psest_1364	0.21	-2.3
1,474,187	+		Psest_1364	0.21	+0.6
1,474,188	-		Psest_1364	0.21	-0.6
1,474,188	-		Psest_1364	0.21	+1.5
1,474,188	-		Psest_1364	0.21	-0.1
1,474,242	+		Psest_1364	0.35	+0.1
1,474,243	-		Psest_1364	0.35	-2.1
1,474,317	+		Psest_1364	0.53	-0.5
1,474,317	+		Psest_1364	0.53	+0.5
1,474,317	+		Psest_1364	0.53	+0.2
1,474,420	-		Psest_1364	0.79	-0.2
1,474,420	-		Psest_1364	0.79	+0.4
1,474,576	+				+0.2
1,474,646	-				+1.1
1,474,646	-				+0.4
1,474,646	-				-0.5
1,474,646	-				+0.7
1,474,996	+		Psest_1365	0.18	+0.4
1,474,996	+		Psest_1365	0.18	-0.3
1,474,997	-		Psest_1365	0.18	-2.5
1,474,997	-		Psest_1365	0.18	-1.3
1,475,192	+		Psest_1365	0.27	+2.0
1,475,193	-		Psest_1365	0.27	+2.0
1,475,193	-		Psest_1365	0.27	-1.3
1,475,193	-		Psest_1365	0.27	+2.0
1,475,195	+		Psest_1365	0.28	+2.5
1,475,559	-		Psest_1365	0.46	-0.9
1,475,799	+		Psest_1365	0.58	+1.4
1,475,799	+		Psest_1365	0.58	-0.2
1,475,799	+		Psest_1365	0.58	-0.5
1,475,799	+		Psest_1365	0.58	-1.8
1,475,800	-		Psest_1365	0.58	-0.2
1,475,800	-		Psest_1365	0.58	-0.3
1,475,800	-		Psest_1365	0.58	-0.4
1,475,800	-		Psest_1365	0.58	+1.3
1,475,800	-		Psest_1365	0.58	-2.0
1,475,800	-		Psest_1365	0.58	-2.4
1,475,800	-		Psest_1365	0.58	+2.4
1,475,800	-		Psest_1365	0.58	-2.5
1,475,800	-		Psest_1365	0.58	-0.7
1,475,804	-		Psest_1365	0.58	+0.3
1,475,827	-		Psest_1365	0.59	+3.0
1,476,007	-		Psest_1365	0.69	+0.5
1,476,027	-		Psest_1365	0.70	-0.6
1,476,027	-		Psest_1365	0.70	-2.0
1,476,067	-		Psest_1365	0.72	-1.5
1,476,078	+		Psest_1365	0.72	+3.3
1,476,078	+		Psest_1365	0.72	-1.0
1,476,078	+		Psest_1365	0.72	+0.7
1,476,078	+		Psest_1365	0.72	+0.7
1,476,078	+		Psest_1365	0.72	-1.3
1,476,078	+		Psest_1365	0.72	-1.3
1,476,078	+		Psest_1365	0.72	-0.3
1,476,078	+		Psest_1365	0.72	-0.0
1,476,078	+		Psest_1365	0.72	-0.7
1,476,078	+		Psest_1365	0.72	-0.5
1,476,078	+		Psest_1365	0.72	+0.8
1,476,078	+		Psest_1365	0.72	-2.5
1,476,079	-		Psest_1365	0.72	-0.9
1,476,079	-		Psest_1365	0.72	-0.4
1,476,079	-		Psest_1365	0.72	+1.5
1,476,079	-		Psest_1365	0.72	-0.3
1,476,079	-		Psest_1365	0.72	-3.0
1,476,111	+		Psest_1365	0.74	-1.3
1,476,111	+		Psest_1365	0.74	+0.4
1,476,111	+		Psest_1365	0.74	+0.1
1,476,111	+		Psest_1365	0.74	-0.0
1,476,111	+		Psest_1365	0.74	-1.3
1,476,111	+		Psest_1365	0.74	-1.9
1,476,111	+		Psest_1365	0.74	+1.5
1,476,112	-		Psest_1365	0.74	-1.2
1,476,112	-		Psest_1365	0.74	-0.1
1,476,112	-		Psest_1365	0.74	+0.8
1,476,488	+				-0.4
1,476,489	-				-0.3
1,476,489	-				+0.0
1,476,675	+				-1.0
1,476,890	+		Psest_1366	0.19	-2.2
1,476,890	+		Psest_1366	0.19	-0.9
1,476,890	+		Psest_1366	0.19	-2.4
1,477,093	+				+0.1
1,477,094	-				-0.5
1,477,104	+				+2.3
1,477,104	+				-1.0
1,477,104	+				+0.1
1,477,124	+				+1.3
1,477,124	+				-0.5
1,477,124	+				-2.0
1,477,124	+				-0.3
1,477,124	+				+0.8
1,477,124	+				-0.0
1,477,124	+				+3.9
1,477,124	+				+1.6
1,477,125	-				+1.1
1,477,125	-				+1.5
1,477,125	-				-3.9
1,477,125	-				+0.7
1,477,125	-				-2.8
1,477,125	-				+1.4
1,477,214	+		Psest_1367	0.47	+0.2
1,477,214	+		Psest_1367	0.47	+0.2
1,477,215	-		Psest_1367	0.48	-1.0
1,477,215	-		Psest_1367	0.48	+2.0
1,477,215	-		Psest_1367	0.48	+0.2
1,477,215	-		Psest_1367	0.48	-2.3
1,477,215	-		Psest_1367	0.48	-1.5
1,477,215	-		Psest_1367	0.48	+0.9
1,477,215	-		Psest_1367	0.48	-0.6
1,477,246	+		Psest_1367	0.62	-2.8
1,477,344	+				+2.5
1,477,344	+				+0.1
1,477,403	+				-0.2
1,477,403	+				-2.5
1,477,403	+				-2.0
1,477,403	+				-0.8
1,477,403	+				+1.7
1,477,403	+				+0.1
1,477,403	+				+2.0
1,477,403	+				-0.7
1,477,404	-				+0.7
1,477,404	-				+2.1
1,477,404	-				+0.8
1,477,404	-				-0.6
1,477,404	-				-2.4
1,477,413	+				+1.1
1,477,414	-				-1.6
1,477,414	-				-0.4
1,477,525	+		Psest_1368	0.21	+1.5
1,477,525	+		Psest_1368	0.21	+3.3
1,477,525	+		Psest_1368	0.21	+1.3
1,477,526	-		Psest_1368	0.21	+2.3
1,477,526	-		Psest_1368	0.21	+3.1
1,477,581	+		Psest_1368	0.30	+1.0
1,477,581	+		Psest_1368	0.30	-0.0
1,477,582	-		Psest_1368	0.30	+1.5
1,477,606	+		Psest_1368	0.34	-1.3