Experiment: Lomefloxacin 0.0001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0960 and Psest_0961 are separated by 95 nucleotides Psest_0961 and Psest_0962 are separated by 58 nucleotides Psest_0962 and Psest_0963 are separated by 203 nucleotides Psest_0963 and Psest_0964 are separated by 99 nucleotides
Psest_0960: Psest_0960 - Small protein A (tmRNA-binding), at 1,040,735 to 1,041,250
_0960
Psest_0961: Psest_0961 - Fe2+/Zn2+ uptake regulation proteins, at 1,041,346 to 1,041,750
_0961
Psest_0962: Psest_0962 - DNA repair protein RecN, at 1,041,809 to 1,043,482
_0962
Psest_0963: Psest_0963 - Molecular chaperone GrpE (heat shock protein), at 1,043,686 to 1,044,255
_0963
Psest_0964: Psest_0964 - chaperone protein DnaK, at 1,044,355 to 1,046,268
_0964
Position (kb)
1041
1042
1043
1044 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1042.004 kb on + strand, within Psest_0962 at 1042.022 kb on + strand, within Psest_0962 at 1042.022 kb on + strand, within Psest_0962 at 1042.023 kb on - strand, within Psest_0962 at 1042.023 kb on - strand, within Psest_0962 at 1042.023 kb on - strand, within Psest_0962 at 1042.109 kb on + strand, within Psest_0962 at 1042.110 kb on - strand, within Psest_0962 at 1042.110 kb on - strand, within Psest_0962 at 1042.173 kb on - strand, within Psest_0962 at 1042.173 kb on - strand, within Psest_0962 at 1042.260 kb on + strand, within Psest_0962 at 1042.426 kb on - strand, within Psest_0962 at 1042.426 kb on - strand, within Psest_0962 at 1042.517 kb on + strand, within Psest_0962 at 1042.517 kb on + strand, within Psest_0962 at 1042.518 kb on - strand, within Psest_0962 at 1042.518 kb on - strand, within Psest_0962 at 1042.557 kb on + strand, within Psest_0962 at 1042.557 kb on + strand, within Psest_0962 at 1042.557 kb on + strand, within Psest_0962 at 1042.557 kb on + strand, within Psest_0962 at 1042.557 kb on + strand, within Psest_0962 at 1042.557 kb on + strand, within Psest_0962 at 1042.557 kb on + strand, within Psest_0962 at 1042.557 kb on + strand, within Psest_0962 at 1042.557 kb on + strand, within Psest_0962 at 1042.557 kb on + strand, within Psest_0962 at 1042.557 kb on + strand, within Psest_0962 at 1042.558 kb on - strand, within Psest_0962 at 1042.558 kb on - strand, within Psest_0962 at 1042.558 kb on - strand, within Psest_0962 at 1042.558 kb on - strand, within Psest_0962 at 1042.558 kb on - strand, within Psest_0962 at 1042.558 kb on - strand, within Psest_0962 at 1042.558 kb on - strand, within Psest_0962 at 1042.952 kb on - strand, within Psest_0962 at 1043.006 kb on + strand, within Psest_0962 at 1043.006 kb on + strand, within Psest_0962 at 1043.167 kb on - strand, within Psest_0962 at 1043.454 kb on + strand at 1043.455 kb on - strand at 1043.497 kb on + strand at 1043.518 kb on - strand at 1043.520 kb on - strand at 1043.541 kb on - strand at 1043.541 kb on - strand at 1043.633 kb on + strand at 1043.633 kb on + strand at 1043.633 kb on + strand at 1043.633 kb on + strand at 1043.633 kb on + strand at 1043.669 kb on + strand at 1043.671 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.0001 mM remove 1,042,004 + Psest_0962 0.12 +0.0 1,042,022 + Psest_0962 0.13 +0.7 1,042,022 + Psest_0962 0.13 +0.8 1,042,023 - Psest_0962 0.13 -0.7 1,042,023 - Psest_0962 0.13 -1.5 1,042,023 - Psest_0962 0.13 +0.2 1,042,109 + Psest_0962 0.18 +0.5 1,042,110 - Psest_0962 0.18 -1.0 1,042,110 - Psest_0962 0.18 +0.4 1,042,173 - Psest_0962 0.22 -3.0 1,042,173 - Psest_0962 0.22 -0.3 1,042,260 + Psest_0962 0.27 -0.1 1,042,426 - Psest_0962 0.37 -0.9 1,042,426 - Psest_0962 0.37 -2.0 1,042,517 + Psest_0962 0.42 -0.2 1,042,517 + Psest_0962 0.42 -2.1 1,042,518 - Psest_0962 0.42 -0.5 1,042,518 - Psest_0962 0.42 -2.8 1,042,557 + Psest_0962 0.45 -1.9 1,042,557 + Psest_0962 0.45 -0.5 1,042,557 + Psest_0962 0.45 +0.1 1,042,557 + Psest_0962 0.45 -1.4 1,042,557 + Psest_0962 0.45 -1.0 1,042,557 + Psest_0962 0.45 -0.3 1,042,557 + Psest_0962 0.45 -0.5 1,042,557 + Psest_0962 0.45 -1.3 1,042,557 + Psest_0962 0.45 -0.7 1,042,557 + Psest_0962 0.45 -0.8 1,042,557 + Psest_0962 0.45 -1.0 1,042,558 - Psest_0962 0.45 -0.8 1,042,558 - Psest_0962 0.45 +0.7 1,042,558 - Psest_0962 0.45 -0.8 1,042,558 - Psest_0962 0.45 -1.9 1,042,558 - Psest_0962 0.45 -0.5 1,042,558 - Psest_0962 0.45 +0.0 1,042,558 - Psest_0962 0.45 -1.4 1,042,952 - Psest_0962 0.68 +0.3 1,043,006 + Psest_0962 0.72 -3.2 1,043,006 + Psest_0962 0.72 +1.5 1,043,167 - Psest_0962 0.81 -0.9 1,043,454 + -1.9 1,043,455 - -1.0 1,043,497 + -1.0 1,043,518 - +1.1 1,043,520 - +0.3 1,043,541 - +0.0 1,043,541 - +2.2 1,043,633 + +0.8 1,043,633 + +0.8 1,043,633 + -1.5 1,043,633 + -0.3 1,043,633 + -0.3 1,043,669 + +0.3 1,043,671 + +0.0
Or see this region's nucleotide sequence