Experiment: Lomefloxacin 0.0001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0908 and Psest_0909 overlap by 1 nucleotides Psest_0909 and Psest_0910 are separated by 51 nucleotides Psest_0910 and Psest_0911 are separated by 94 nucleotides
Psest_0908: Psest_0908 - hypothetical protein, at 986,202 to 986,606
_0908
Psest_0909: Psest_0909 - hypothetical protein, at 986,606 to 986,920
_0909
Psest_0910: Psest_0910 - hypothetical protein, at 986,972 to 987,343
_0910
Psest_0911: Psest_0911 - Inhibitor of the KinA pathway to sporulation, predicted exonuclease, at 987,438 to 988,091
_0911
Position (kb) 986
987 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 985.240 kb on - strand at 985.299 kb on - strand at 985.302 kb on + strand at 985.307 kb on + strand at 985.307 kb on + strand at 985.307 kb on + strand at 985.307 kb on + strand at 985.307 kb on + strand at 985.307 kb on + strand at 985.307 kb on + strand at 985.307 kb on + strand at 985.308 kb on - strand at 985.308 kb on - strand at 985.308 kb on - strand at 985.308 kb on - strand at 985.308 kb on - strand at 985.308 kb on - strand at 985.308 kb on - strand at 985.308 kb on - strand at 985.308 kb on - strand at 985.308 kb on - strand at 985.308 kb on - strand at 985.308 kb on - strand at 985.308 kb on - strand at 985.311 kb on + strand at 985.311 kb on + strand at 985.311 kb on + strand at 985.311 kb on + strand at 985.312 kb on - strand at 985.312 kb on - strand at 985.312 kb on - strand at 985.312 kb on - strand at 985.312 kb on - strand at 985.312 kb on - strand at 985.312 kb on - strand at 985.312 kb on - strand at 985.361 kb on + strand at 985.362 kb on - strand at 985.394 kb on + strand at 985.394 kb on + strand at 985.394 kb on + strand at 985.395 kb on - strand at 985.397 kb on - strand at 985.397 kb on - strand at 985.405 kb on - strand at 985.422 kb on - strand at 985.435 kb on - strand at 985.498 kb on - strand at 985.498 kb on - strand at 985.498 kb on - strand at 985.498 kb on - strand at 985.498 kb on - strand at 985.498 kb on - strand at 985.501 kb on + strand at 985.502 kb on - strand at 985.502 kb on - strand at 985.509 kb on + strand at 985.510 kb on - strand at 985.510 kb on - strand at 985.510 kb on - strand at 985.510 kb on - strand at 985.510 kb on - strand at 985.510 kb on - strand at 985.516 kb on + strand at 985.516 kb on + strand at 985.517 kb on - strand at 985.536 kb on - strand at 985.566 kb on - strand at 985.572 kb on + strand at 985.602 kb on + strand at 985.603 kb on - strand at 985.603 kb on - strand at 985.603 kb on - strand at 985.603 kb on - strand at 985.603 kb on - strand at 985.741 kb on + strand at 985.741 kb on + strand at 985.742 kb on - strand at 985.742 kb on - strand at 985.742 kb on - strand at 985.742 kb on - strand at 985.758 kb on + strand at 985.759 kb on - strand at 985.759 kb on - strand at 985.759 kb on - strand at 985.759 kb on - strand at 985.780 kb on + strand at 985.846 kb on - strand at 985.848 kb on - strand at 985.978 kb on - strand at 986.017 kb on - strand at 986.021 kb on - strand at 986.082 kb on - strand at 986.122 kb on + strand at 986.129 kb on + strand at 986.130 kb on - strand at 986.179 kb on + strand at 986.179 kb on + strand at 986.180 kb on - strand at 986.190 kb on + strand at 986.221 kb on + strand at 986.226 kb on + strand at 986.226 kb on + strand at 986.227 kb on - strand at 986.424 kb on + strand, within Psest_0908 at 986.424 kb on + strand, within Psest_0908 at 986.424 kb on + strand, within Psest_0908 at 986.424 kb on + strand, within Psest_0908 at 986.424 kb on + strand, within Psest_0908 at 986.425 kb on - strand, within Psest_0908 at 986.442 kb on + strand, within Psest_0908 at 986.442 kb on + strand, within Psest_0908 at 986.442 kb on + strand, within Psest_0908 at 986.443 kb on - strand, within Psest_0908 at 986.484 kb on - strand, within Psest_0908 at 986.484 kb on - strand, within Psest_0908 at 986.484 kb on - strand, within Psest_0908 at 986.534 kb on + strand, within Psest_0908 at 986.534 kb on + strand, within Psest_0908 at 986.534 kb on + strand, within Psest_0908 at 986.541 kb on + strand, within Psest_0908 at 986.542 kb on - strand, within Psest_0908 at 986.542 kb on - strand, within Psest_0908 at 986.542 kb on - strand, within Psest_0908 at 986.585 kb on + strand at 986.586 kb on - strand at 986.620 kb on - strand at 986.637 kb on + strand at 986.637 kb on + strand at 986.637 kb on + strand at 986.680 kb on + strand, within Psest_0909 at 986.681 kb on - strand, within Psest_0909 at 986.681 kb on - strand, within Psest_0909 at 986.814 kb on - strand, within Psest_0909 at 986.835 kb on + strand, within Psest_0909 at 986.835 kb on + strand, within Psest_0909 at 986.835 kb on + strand, within Psest_0909 at 986.835 kb on + strand, within Psest_0909 at 986.835 kb on + strand, within Psest_0909 at 986.836 kb on - strand, within Psest_0909 at 986.836 kb on - strand, within Psest_0909 at 986.836 kb on - strand, within Psest_0909 at 986.836 kb on - strand, within Psest_0909 at 986.836 kb on - strand, within Psest_0909 at 986.836 kb on - strand, within Psest_0909 at 986.836 kb on - strand, within Psest_0909 at 986.873 kb on + strand, within Psest_0909 at 986.873 kb on + strand, within Psest_0909 at 986.873 kb on + strand, within Psest_0909 at 986.874 kb on - strand, within Psest_0909 at 986.888 kb on - strand, within Psest_0909 at 986.904 kb on - strand at 987.012 kb on + strand, within Psest_0910 at 987.013 kb on - strand, within Psest_0910 at 987.013 kb on - strand, within Psest_0910 at 987.041 kb on - strand, within Psest_0910 at 987.083 kb on + strand, within Psest_0910 at 987.140 kb on + strand, within Psest_0910 at 987.140 kb on + strand, within Psest_0910 at 987.140 kb on + strand, within Psest_0910 at 987.141 kb on - strand, within Psest_0910 at 987.141 kb on - strand, within Psest_0910 at 987.183 kb on + strand, within Psest_0910 at 987.183 kb on + strand, within Psest_0910 at 987.184 kb on - strand, within Psest_0910 at 987.184 kb on - strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.243 kb on - strand, within Psest_0910 at 987.243 kb on - strand, within Psest_0910 at 987.243 kb on - strand, within Psest_0910 at 987.243 kb on - strand, within Psest_0910 at 987.243 kb on - strand, within Psest_0910 at 987.315 kb on + strand at 987.362 kb on - strand at 987.362 kb on - strand at 987.364 kb on + strand at 987.364 kb on + strand at 987.365 kb on - strand at 987.367 kb on - strand at 987.405 kb on + strand at 987.406 kb on - strand at 987.406 kb on - strand at 987.406 kb on - strand at 987.445 kb on + strand at 987.503 kb on - strand at 987.537 kb on + strand, within Psest_0911 at 987.577 kb on + strand, within Psest_0911 at 987.577 kb on + strand, within Psest_0911 at 987.577 kb on + strand, within Psest_0911 at 987.577 kb on + strand, within Psest_0911 at 987.578 kb on - strand, within Psest_0911 at 987.578 kb on - strand, within Psest_0911
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.0001 mM remove 985,240 - -0.3 985,299 - +0.1 985,302 + -2.0 985,307 + -0.5 985,307 + +0.0 985,307 + -1.5 985,307 + +1.0 985,307 + -0.8 985,307 + +1.0 985,307 + +0.5 985,307 + -1.4 985,308 - -0.2 985,308 - -1.0 985,308 - +0.9 985,308 - -0.5 985,308 - +0.3 985,308 - -2.0 985,308 - +3.5 985,308 - -0.6 985,308 - -0.3 985,308 - -1.8 985,308 - -1.3 985,308 - +0.4 985,308 - +1.5 985,311 + -0.1 985,311 + -0.0 985,311 + -0.9 985,311 + +0.5 985,312 - -1.3 985,312 - -0.0 985,312 - -0.3 985,312 - +0.4 985,312 - -0.3 985,312 - +0.7 985,312 - +1.5 985,312 - +1.0 985,361 + -0.2 985,362 - +0.9 985,394 + -2.0 985,394 + -1.0 985,394 + -0.9 985,395 - +1.7 985,397 - -0.0 985,397 - +0.4 985,405 - -2.5 985,422 - -0.0 985,435 - -0.8 985,498 - +0.8 985,498 - +0.1 985,498 - -0.5 985,498 - -0.4 985,498 - +2.4 985,498 - +1.5 985,501 + -1.0 985,502 - +1.2 985,502 - -0.2 985,509 + -1.3 985,510 - -0.1 985,510 - -0.6 985,510 - -0.0 985,510 - -0.6 985,510 - +2.1 985,510 - +1.3 985,516 + -2.9 985,516 + -0.8 985,517 - +0.4 985,536 - -0.4 985,566 - -0.1 985,572 + -1.6 985,602 + -1.1 985,603 - +0.1 985,603 - -1.4 985,603 - -1.0 985,603 - -0.7 985,603 - -1.3 985,741 + +1.5 985,741 + -3.2 985,742 - -0.1 985,742 - +1.6 985,742 - -0.5 985,742 - +0.3 985,758 + -2.9 985,759 - -0.6 985,759 - -1.2 985,759 - -0.0 985,759 - -1.6 985,780 + -0.3 985,846 - -0.3 985,848 - +1.5 985,978 - -0.9 986,017 - -0.3 986,021 - -3.2 986,082 - -0.5 986,122 + -0.2 986,129 + +0.5 986,130 - -0.1 986,179 + +0.6 986,179 + -2.3 986,180 - +0.5 986,190 + -0.0 986,221 + +1.5 986,226 + +0.3 986,226 + -0.8 986,227 - +0.2 986,424 + Psest_0908 0.55 -1.0 986,424 + Psest_0908 0.55 -0.5 986,424 + Psest_0908 0.55 -0.0 986,424 + Psest_0908 0.55 -1.6 986,424 + Psest_0908 0.55 +0.5 986,425 - Psest_0908 0.55 -2.3 986,442 + Psest_0908 0.59 -1.3 986,442 + Psest_0908 0.59 -2.4 986,442 + Psest_0908 0.59 -0.3 986,443 - Psest_0908 0.60 -1.5 986,484 - Psest_0908 0.70 -0.3 986,484 - Psest_0908 0.70 -0.6 986,484 - Psest_0908 0.70 -1.5 986,534 + Psest_0908 0.82 +0.7 986,534 + Psest_0908 0.82 -0.7 986,534 + Psest_0908 0.82 -0.9 986,541 + Psest_0908 0.84 -0.1 986,542 - Psest_0908 0.84 -1.9 986,542 - Psest_0908 0.84 +0.7 986,542 - Psest_0908 0.84 -1.0 986,585 + +0.3 986,586 - +1.5 986,620 - -1.5 986,637 + +0.5 986,637 + -0.5 986,637 + -0.3 986,680 + Psest_0909 0.23 +0.2 986,681 - Psest_0909 0.24 -1.1 986,681 - Psest_0909 0.24 +0.3 986,814 - Psest_0909 0.66 +0.3 986,835 + Psest_0909 0.73 -0.0 986,835 + Psest_0909 0.73 -0.1 986,835 + Psest_0909 0.73 +0.4 986,835 + Psest_0909 0.73 +0.3 986,835 + Psest_0909 0.73 -0.5 986,836 - Psest_0909 0.73 -0.4 986,836 - Psest_0909 0.73 +0.3 986,836 - Psest_0909 0.73 +1.0 986,836 - Psest_0909 0.73 -2.5 986,836 - Psest_0909 0.73 -1.6 986,836 - Psest_0909 0.73 -0.1 986,836 - Psest_0909 0.73 +1.0 986,873 + Psest_0909 0.85 -0.8 986,873 + Psest_0909 0.85 +2.5 986,873 + Psest_0909 0.85 +0.5 986,874 - Psest_0909 0.85 -0.6 986,888 - Psest_0909 0.90 +0.4 986,904 - +0.1 987,012 + Psest_0910 0.11 -0.4 987,013 - Psest_0910 0.11 +0.3 987,013 - Psest_0910 0.11 -1.8 987,041 - Psest_0910 0.19 -1.0 987,083 + Psest_0910 0.30 -0.6 987,140 + Psest_0910 0.45 -0.6 987,140 + Psest_0910 0.45 -0.1 987,140 + Psest_0910 0.45 +0.2 987,141 - Psest_0910 0.45 +1.1 987,141 - Psest_0910 0.45 +0.7 987,183 + Psest_0910 0.57 +0.4 987,183 + Psest_0910 0.57 -0.0 987,184 - Psest_0910 0.57 +1.5 987,184 - Psest_0910 0.57 -0.3 987,242 + Psest_0910 0.73 -2.4 987,242 + Psest_0910 0.73 -1.4 987,242 + Psest_0910 0.73 +0.5 987,242 + Psest_0910 0.73 -1.3 987,242 + Psest_0910 0.73 -0.4 987,242 + Psest_0910 0.73 -1.9 987,242 + Psest_0910 0.73 -1.5 987,242 + Psest_0910 0.73 -1.5 987,243 - Psest_0910 0.73 -2.5 987,243 - Psest_0910 0.73 +2.8 987,243 - Psest_0910 0.73 -1.4 987,243 - Psest_0910 0.73 -0.3 987,243 - Psest_0910 0.73 -1.2 987,315 + +1.8 987,362 - +0.9 987,362 - -0.9 987,364 + +0.9 987,364 + -0.5 987,365 - -1.1 987,367 - +0.2 987,405 + -1.3 987,406 - +0.2 987,406 - -1.0 987,406 - -3.1 987,445 + +0.4 987,503 - +0.3 987,537 + Psest_0911 0.15 +0.2 987,577 + Psest_0911 0.21 +0.1 987,577 + Psest_0911 0.21 +0.2 987,577 + Psest_0911 0.21 -0.2 987,577 + Psest_0911 0.21 +2.2 987,578 - Psest_0911 0.21 -2.0 987,578 - Psest_0911 0.21 -1.5
Or see this region's nucleotide sequence