Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0206

Experiment: Lomefloxacin 0.0001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0205 and Psest_0206 are separated by 27 nucleotidesPsest_0206 and Psest_0207 are separated by 78 nucleotidesPsest_0207 and Psest_0208 are separated by 1 nucleotides Psest_0205: Psest_0205 - tricarboxylate porin (from data), at 205,051 to 206,313 _0205 Psest_0206: Psest_0206 - Uncharacterized protein conserved in bacteria, at 206,341 to 207,315 _0206 Psest_0207: Psest_0207 - hypothetical protein, at 207,394 to 207,837 _0207 Psest_0208: Psest_0208 - Uncharacterized protein conserved in bacteria, at 207,839 to 209,353 _0208 Position (kb) 206 207 208Strain fitness (log2 ratio) -2 -1 0 1 2 3at 205.696 kb on + strand, within Psest_0205at 205.696 kb on + strand, within Psest_0205at 205.697 kb on - strand, within Psest_0205at 205.697 kb on - strand, within Psest_0205at 205.729 kb on + strand, within Psest_0205at 205.729 kb on + strand, within Psest_0205at 205.730 kb on - strand, within Psest_0205at 205.730 kb on - strand, within Psest_0205at 205.733 kb on - strand, within Psest_0205at 205.964 kb on - strand, within Psest_0205at 205.969 kb on + strand, within Psest_0205at 205.969 kb on + strand, within Psest_0205at 205.969 kb on + strand, within Psest_0205at 205.969 kb on + strand, within Psest_0205at 205.969 kb on + strand, within Psest_0205at 205.969 kb on + strand, within Psest_0205at 205.969 kb on + strand, within Psest_0205at 205.969 kb on + strand, within Psest_0205at 205.969 kb on + strand, within Psest_0205at 205.969 kb on + strand, within Psest_0205at 205.969 kb on + strand, within Psest_0205at 205.970 kb on - strand, within Psest_0205at 205.970 kb on - strand, within Psest_0205at 205.970 kb on - strand, within Psest_0205at 205.970 kb on - strand, within Psest_0205at 205.970 kb on - strand, within Psest_0205at 205.970 kb on - strand, within Psest_0205at 205.970 kb on - strand, within Psest_0205at 205.970 kb on - strand, within Psest_0205at 205.970 kb on - strand, within Psest_0205at 205.970 kb on - strand, within Psest_0205at 205.970 kb on - strand, within Psest_0205at 205.970 kb on - strand, within Psest_0205at 205.970 kb on - strand, within Psest_0205at 206.110 kb on + strand, within Psest_0205at 206.134 kb on + strand, within Psest_0205at 206.134 kb on + strand, within Psest_0205at 206.134 kb on + strand, within Psest_0205at 206.135 kb on - strand, within Psest_0205at 206.135 kb on - strand, within Psest_0205at 206.135 kb on - strand, within Psest_0205at 206.135 kb on - strand, within Psest_0205at 206.185 kb on + strand, within Psest_0205at 206.185 kb on + strand, within Psest_0205at 206.186 kb on - strand, within Psest_0205at 206.186 kb on - strand, within Psest_0205at 206.186 kb on - strand, within Psest_0205at 206.186 kb on - strand, within Psest_0205at 206.293 kb on + strandat 206.294 kb on - strandat 206.294 kb on - strandat 206.294 kb on - strandat 206.294 kb on - strandat 206.533 kb on + strand, within Psest_0206at 206.533 kb on + strand, within Psest_0206at 206.533 kb on + strand, within Psest_0206at 206.533 kb on + strand, within Psest_0206at 206.533 kb on + strand, within Psest_0206at 206.533 kb on + strand, within Psest_0206at 206.533 kb on + strand, within Psest_0206at 206.533 kb on + strand, within Psest_0206at 206.533 kb on + strand, within Psest_0206at 206.533 kb on + strand, within Psest_0206at 206.534 kb on - strand, within Psest_0206at 206.534 kb on - strand, within Psest_0206at 206.534 kb on - strand, within Psest_0206at 206.534 kb on - strand, within Psest_0206at 206.534 kb on - strand, within Psest_0206at 206.534 kb on - strand, within Psest_0206at 206.534 kb on - strand, within Psest_0206at 206.563 kb on + strand, within Psest_0206at 206.563 kb on + strand, within Psest_0206at 206.662 kb on + strand, within Psest_0206at 206.662 kb on + strand, within Psest_0206at 206.708 kb on - strand, within Psest_0206at 206.888 kb on - strand, within Psest_0206at 207.077 kb on - strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.277 kb on + strandat 207.277 kb on + strandat 207.277 kb on + strandat 207.277 kb on + strandat 207.277 kb on + strandat 207.277 kb on + strandat 207.278 kb on - strandat 207.278 kb on - strandat 207.314 kb on - strandat 207.344 kb on - strandat 207.397 kb on + strandat 207.397 kb on + strandat 207.397 kb on + strandat 207.397 kb on + strandat 207.397 kb on + strandat 207.397 kb on + strandat 207.397 kb on + strandat 207.397 kb on + strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.401 kb on + strandat 207.401 kb on + strandat 207.401 kb on + strandat 207.401 kb on + strandat 207.401 kb on + strandat 207.401 kb on + strandat 207.401 kb on + strandat 207.401 kb on + strandat 207.401 kb on + strandat 207.401 kb on + strandat 207.401 kb on + strandat 207.401 kb on + strandat 207.402 kb on - strandat 207.402 kb on - strandat 207.402 kb on - strandat 207.402 kb on - strandat 207.402 kb on - strandat 207.402 kb on - strandat 207.402 kb on - strandat 207.402 kb on - strandat 207.402 kb on - strandat 207.402 kb on - strandat 207.402 kb on - strandat 207.402 kb on - strandat 207.402 kb on - strandat 207.402 kb on - strandat 207.402 kb on - strandat 207.402 kb on - strandat 207.640 kb on + strand, within Psest_0207at 207.640 kb on + strand, within Psest_0207at 207.640 kb on + strand, within Psest_0207at 207.641 kb on - strand, within Psest_0207at 207.641 kb on - strand, within Psest_0207at 207.770 kb on - strand, within Psest_0207at 207.785 kb on - strand, within Psest_0207at 208.047 kb on - strand, within Psest_0208at 208.283 kb on + strand, within Psest_0208at 208.283 kb on + strand, within Psest_0208at 208.283 kb on + strand, within Psest_0208at 208.283 kb on + strand, within Psest_0208

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.0001 mM
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205,696 + Psest_0205 0.51 +0.7
205,696 + Psest_0205 0.51 +1.6
205,697 - Psest_0205 0.51 -0.7
205,697 - Psest_0205 0.51 +1.3
205,729 + Psest_0205 0.54 -0.8
205,729 + Psest_0205 0.54 -0.6
205,730 - Psest_0205 0.54 +0.4
205,730 - Psest_0205 0.54 -0.3
205,733 - Psest_0205 0.54 -0.4
205,964 - Psest_0205 0.72 -1.6
205,969 + Psest_0205 0.73 +0.7
205,969 + Psest_0205 0.73 -0.3
205,969 + Psest_0205 0.73 -0.1
205,969 + Psest_0205 0.73 +0.4
205,969 + Psest_0205 0.73 -0.1
205,969 + Psest_0205 0.73 -1.6
205,969 + Psest_0205 0.73 +0.8
205,969 + Psest_0205 0.73 -0.3
205,969 + Psest_0205 0.73 +1.3
205,969 + Psest_0205 0.73 -2.0
205,969 + Psest_0205 0.73 +2.4
205,970 - Psest_0205 0.73 -0.6
205,970 - Psest_0205 0.73 -0.1
205,970 - Psest_0205 0.73 +3.7
205,970 - Psest_0205 0.73 +1.0
205,970 - Psest_0205 0.73 +0.0
205,970 - Psest_0205 0.73 +0.0
205,970 - Psest_0205 0.73 -0.9
205,970 - Psest_0205 0.73 +0.1
205,970 - Psest_0205 0.73 -1.7
205,970 - Psest_0205 0.73 -0.2
205,970 - Psest_0205 0.73 +0.6
205,970 - Psest_0205 0.73 -0.2
205,970 - Psest_0205 0.73 -0.3
206,110 + Psest_0205 0.84 +1.2
206,134 + Psest_0205 0.86 -0.8
206,134 + Psest_0205 0.86 -1.1
206,134 + Psest_0205 0.86 -1.7
206,135 - Psest_0205 0.86 +0.1
206,135 - Psest_0205 0.86 +1.2
206,135 - Psest_0205 0.86 +2.2
206,135 - Psest_0205 0.86 +1.1
206,185 + Psest_0205 0.90 -0.5
206,185 + Psest_0205 0.90 +0.3
206,186 - Psest_0205 0.90 -0.6
206,186 - Psest_0205 0.90 -0.1
206,186 - Psest_0205 0.90 +0.2
206,186 - Psest_0205 0.90 -1.1
206,293 + -1.1
206,294 - -1.7
206,294 - -0.0
206,294 - -1.6
206,294 - -0.1
206,533 + Psest_0206 0.20 +0.9
206,533 + Psest_0206 0.20 +1.3
206,533 + Psest_0206 0.20 -0.1
206,533 + Psest_0206 0.20 +0.4
206,533 + Psest_0206 0.20 +2.4
206,533 + Psest_0206 0.20 -0.6
206,533 + Psest_0206 0.20 +0.3
206,533 + Psest_0206 0.20 +0.9
206,533 + Psest_0206 0.20 +0.5
206,533 + Psest_0206 0.20 -0.7
206,534 - Psest_0206 0.20 -0.3
206,534 - Psest_0206 0.20 +2.8
206,534 - Psest_0206 0.20 -1.4
206,534 - Psest_0206 0.20 -0.3
206,534 - Psest_0206 0.20 +0.3
206,534 - Psest_0206 0.20 +0.3
206,534 - Psest_0206 0.20 -0.1
206,563 + Psest_0206 0.23 -0.0
206,563 + Psest_0206 0.23 +0.1
206,662 + Psest_0206 0.33 -0.3
206,662 + Psest_0206 0.33 +1.1
206,708 - Psest_0206 0.38 -1.2
206,888 - Psest_0206 0.56 -0.4
207,077 - Psest_0206 0.75 -0.3
207,109 + Psest_0206 0.79 -0.5
207,109 + Psest_0206 0.79 -0.7
207,109 + Psest_0206 0.79 -1.3
207,109 + Psest_0206 0.79 -0.3
207,109 + Psest_0206 0.79 -0.0
207,109 + Psest_0206 0.79 +0.6
207,109 + Psest_0206 0.79 +0.1
207,109 + Psest_0206 0.79 -0.1
207,109 + Psest_0206 0.79 +0.1
207,109 + Psest_0206 0.79 +1.2
207,109 + Psest_0206 0.79 -0.6
207,109 + Psest_0206 0.79 +0.6
207,110 - Psest_0206 0.79 -1.0
207,110 - Psest_0206 0.79 +0.9
207,110 - Psest_0206 0.79 +0.7
207,110 - Psest_0206 0.79 -0.7
207,110 - Psest_0206 0.79 +0.0
207,110 - Psest_0206 0.79 +0.0
207,110 - Psest_0206 0.79 -0.9
207,110 - Psest_0206 0.79 +1.4
207,110 - Psest_0206 0.79 -0.9
207,110 - Psest_0206 0.79 -0.3
207,110 - Psest_0206 0.79 -0.6
207,110 - Psest_0206 0.79 -0.9
207,110 - Psest_0206 0.79 -1.6
207,110 - Psest_0206 0.79 +1.4
207,277 + -1.4
207,277 + +1.5
207,277 + +0.4
207,277 + -0.7
207,277 + +0.4
207,277 + +1.1
207,278 - -2.5
207,278 - -1.1
207,314 - -1.1
207,344 - -0.0
207,397 + -0.0
207,397 + -0.4
207,397 + +0.6
207,397 + +0.6
207,397 + +1.0
207,397 + -0.9
207,397 + +1.1
207,397 + -2.4
207,398 - +0.9
207,398 - -0.3
207,398 - +3.0
207,398 - +0.6
207,398 - +0.5
207,398 - -1.4
207,398 - +1.0
207,398 - -0.8
207,398 - +0.7
207,398 - +1.3
207,398 - +1.3
207,398 - -1.9
207,398 - -0.4
207,398 - +0.8
207,398 - -0.5
207,398 - -0.2
207,398 - -1.7
207,398 - -0.9
207,401 + +0.0
207,401 + -0.4
207,401 + -0.6
207,401 + +0.1
207,401 + +0.7
207,401 + -0.9
207,401 + -0.6
207,401 + -0.5
207,401 + +1.4
207,401 + -0.9
207,401 + -1.4
207,401 + +0.5
207,402 - +0.3
207,402 - +1.5
207,402 - +0.6
207,402 - -0.1
207,402 - -0.1
207,402 - -0.9
207,402 - +0.8
207,402 - +0.5
207,402 - -1.7
207,402 - -1.3
207,402 - +2.5
207,402 - +0.1
207,402 - +0.9
207,402 - -1.6
207,402 - +0.3
207,402 - +3.6
207,640 + Psest_0207 0.55 -0.4
207,640 + Psest_0207 0.55 +0.1
207,640 + Psest_0207 0.55 -1.9
207,641 - Psest_0207 0.56 -1.3
207,641 - Psest_0207 0.56 +1.2
207,770 - Psest_0207 0.85 +0.7
207,785 - Psest_0207 0.88 +0.5
208,047 - Psest_0208 0.14 -1.3
208,283 + Psest_0208 0.29 -0.6
208,283 + Psest_0208 0.29 +0.2
208,283 + Psest_0208 0.29 -0.1
208,283 + Psest_0208 0.29 +1.0

Or see this region's nucleotide sequence