Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0914 and Psest_0915 are separated by 325 nucleotides Psest_0915 and Psest_0916 are separated by 566 nucleotides
Psest_0914: Psest_0914 - Lhr-like helicases, at 992,050 to 994,269
_0914
Psest_0915: Psest_0915 - hypothetical protein, at 994,595 to 995,029
_0915
Psest_0916: Psest_0916 - Phage integrase family., at 995,596 to 996,489
_0916
Position (kb) 994
995
996 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 993.779 kb on + strand, within Psest_0914 at 993.779 kb on + strand, within Psest_0914 at 993.779 kb on + strand, within Psest_0914 at 993.779 kb on + strand, within Psest_0914 at 993.779 kb on + strand, within Psest_0914 at 993.779 kb on + strand, within Psest_0914 at 993.779 kb on + strand, within Psest_0914 at 993.779 kb on + strand, within Psest_0914 at 993.780 kb on - strand, within Psest_0914 at 993.780 kb on - strand, within Psest_0914 at 993.780 kb on - strand, within Psest_0914 at 993.833 kb on - strand, within Psest_0914 at 993.838 kb on + strand, within Psest_0914 at 993.839 kb on - strand, within Psest_0914 at 993.847 kb on - strand, within Psest_0914 at 993.847 kb on - strand, within Psest_0914 at 993.863 kb on + strand, within Psest_0914 at 993.863 kb on + strand, within Psest_0914 at 993.863 kb on + strand, within Psest_0914 at 993.864 kb on - strand, within Psest_0914 at 993.864 kb on - strand, within Psest_0914 at 993.864 kb on - strand, within Psest_0914 at 993.866 kb on + strand, within Psest_0914 at 993.866 kb on + strand, within Psest_0914 at 993.866 kb on + strand, within Psest_0914 at 993.866 kb on + strand, within Psest_0914 at 993.866 kb on + strand, within Psest_0914 at 993.866 kb on + strand, within Psest_0914 at 993.866 kb on + strand, within Psest_0914 at 993.867 kb on - strand, within Psest_0914 at 993.867 kb on - strand, within Psest_0914 at 993.867 kb on - strand, within Psest_0914 at 993.867 kb on - strand, within Psest_0914 at 993.867 kb on - strand, within Psest_0914 at 993.867 kb on - strand, within Psest_0914 at 993.867 kb on - strand, within Psest_0914 at 993.867 kb on - strand, within Psest_0914 at 993.867 kb on - strand, within Psest_0914 at 993.867 kb on - strand, within Psest_0914 at 993.867 kb on - strand, within Psest_0914 at 993.933 kb on + strand, within Psest_0914 at 993.934 kb on - strand, within Psest_0914 at 993.934 kb on - strand, within Psest_0914 at 993.940 kb on + strand, within Psest_0914 at 993.940 kb on + strand, within Psest_0914 at 993.940 kb on + strand, within Psest_0914 at 993.940 kb on + strand, within Psest_0914 at 993.940 kb on + strand, within Psest_0914 at 993.941 kb on - strand, within Psest_0914 at 993.980 kb on + strand, within Psest_0914 at 994.128 kb on - strand at 994.128 kb on - strand at 994.128 kb on - strand at 994.128 kb on - strand at 994.175 kb on + strand at 994.175 kb on + strand at 994.176 kb on - strand at 994.176 kb on - strand at 994.273 kb on + strand at 994.273 kb on + strand at 994.274 kb on - strand at 994.278 kb on + strand at 994.278 kb on + strand at 994.278 kb on + strand at 994.279 kb on - strand at 994.279 kb on - strand at 994.279 kb on - strand at 994.522 kb on + strand at 994.657 kb on - strand, within Psest_0915 at 994.701 kb on - strand, within Psest_0915 at 994.839 kb on + strand, within Psest_0915 at 994.840 kb on - strand, within Psest_0915 at 994.840 kb on - strand, within Psest_0915 at 994.895 kb on + strand, within Psest_0915 at 994.895 kb on + strand, within Psest_0915 at 994.896 kb on - strand, within Psest_0915 at 994.896 kb on - strand, within Psest_0915 at 994.896 kb on - strand, within Psest_0915 at 994.898 kb on - strand, within Psest_0915 at 994.976 kb on + strand, within Psest_0915 at 994.976 kb on + strand, within Psest_0915 at 994.977 kb on - strand, within Psest_0915 at 994.977 kb on - strand, within Psest_0915 at 994.977 kb on - strand, within Psest_0915 at 995.019 kb on - strand at 995.065 kb on + strand at 995.151 kb on + strand at 995.155 kb on + strand at 995.156 kb on - strand at 995.180 kb on + strand at 995.185 kb on + strand at 995.186 kb on - strand at 995.186 kb on - strand at 995.203 kb on + strand at 995.204 kb on - strand at 995.204 kb on - strand at 995.204 kb on - strand at 995.204 kb on - strand at 995.204 kb on - strand at 995.276 kb on - strand at 995.282 kb on - strand at 995.367 kb on + strand at 995.367 kb on + strand at 995.368 kb on - strand at 995.368 kb on - strand at 995.688 kb on + strand, within Psest_0916 at 995.881 kb on - strand, within Psest_0916 at 995.912 kb on + strand, within Psest_0916 at 995.912 kb on + strand, within Psest_0916 at 995.958 kb on - strand, within Psest_0916 at 996.021 kb on + strand, within Psest_0916 at 996.021 kb on + strand, within Psest_0916 at 996.021 kb on + strand, within Psest_0916 at 996.021 kb on + strand, within Psest_0916 at 996.022 kb on - strand, within Psest_0916 at 996.022 kb on - strand, within Psest_0916 at 996.022 kb on - strand, within Psest_0916 at 996.022 kb on - strand, within Psest_0916 at 996.022 kb on - strand, within Psest_0916 at 996.022 kb on - strand, within Psest_0916 at 996.022 kb on - strand, within Psest_0916 at 996.023 kb on + strand, within Psest_0916 at 996.023 kb on + strand, within Psest_0916 at 996.023 kb on + strand, within Psest_0916 at 996.024 kb on - strand, within Psest_0916 at 996.024 kb on - strand, within Psest_0916 at 996.024 kb on - strand, within Psest_0916
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 993,779 + Psest_0914 0.78 +1.0 993,779 + Psest_0914 0.78 -1.3 993,779 + Psest_0914 0.78 +1.1 993,779 + Psest_0914 0.78 +1.2 993,779 + Psest_0914 0.78 -1.4 993,779 + Psest_0914 0.78 +0.2 993,779 + Psest_0914 0.78 +1.4 993,779 + Psest_0914 0.78 +0.4 993,780 - Psest_0914 0.78 -1.9 993,780 - Psest_0914 0.78 -2.1 993,780 - Psest_0914 0.78 +0.8 993,833 - Psest_0914 0.80 -0.1 993,838 + Psest_0914 0.81 -0.8 993,839 - Psest_0914 0.81 -0.4 993,847 - Psest_0914 0.81 -0.5 993,847 - Psest_0914 0.81 +1.0 993,863 + Psest_0914 0.82 +0.1 993,863 + Psest_0914 0.82 +0.6 993,863 + Psest_0914 0.82 +1.9 993,864 - Psest_0914 0.82 -2.2 993,864 - Psest_0914 0.82 -1.5 993,864 - Psest_0914 0.82 +0.0 993,866 + Psest_0914 0.82 +0.5 993,866 + Psest_0914 0.82 +0.9 993,866 + Psest_0914 0.82 +1.4 993,866 + Psest_0914 0.82 -0.2 993,866 + Psest_0914 0.82 -1.3 993,866 + Psest_0914 0.82 +0.5 993,866 + Psest_0914 0.82 -1.0 993,867 - Psest_0914 0.82 -1.7 993,867 - Psest_0914 0.82 +0.1 993,867 - Psest_0914 0.82 -0.7 993,867 - Psest_0914 0.82 +0.6 993,867 - Psest_0914 0.82 -0.4 993,867 - Psest_0914 0.82 -0.4 993,867 - Psest_0914 0.82 -2.1 993,867 - Psest_0914 0.82 -0.9 993,867 - Psest_0914 0.82 -0.8 993,867 - Psest_0914 0.82 -0.2 993,867 - Psest_0914 0.82 -0.7 993,933 + Psest_0914 0.85 -0.0 993,934 - Psest_0914 0.85 -0.2 993,934 - Psest_0914 0.85 +0.2 993,940 + Psest_0914 0.85 +1.8 993,940 + Psest_0914 0.85 -1.2 993,940 + Psest_0914 0.85 +0.0 993,940 + Psest_0914 0.85 +0.5 993,940 + Psest_0914 0.85 -0.8 993,941 - Psest_0914 0.85 -1.4 993,980 + Psest_0914 0.87 -1.7 994,128 - -1.0 994,128 - -1.5 994,128 - -0.9 994,128 - +0.2 994,175 + +0.3 994,175 + +0.9 994,176 - -0.2 994,176 - -0.6 994,273 + -0.2 994,273 + -0.6 994,274 - -0.8 994,278 + +0.1 994,278 + -0.8 994,278 + +2.8 994,279 - -0.4 994,279 - +0.1 994,279 - +1.8 994,522 + -0.8 994,657 - Psest_0915 0.14 -0.2 994,701 - Psest_0915 0.24 +0.4 994,839 + Psest_0915 0.56 -0.4 994,840 - Psest_0915 0.56 -1.8 994,840 - Psest_0915 0.56 +0.2 994,895 + Psest_0915 0.69 -0.9 994,895 + Psest_0915 0.69 -0.0 994,896 - Psest_0915 0.69 +2.7 994,896 - Psest_0915 0.69 -1.2 994,896 - Psest_0915 0.69 -3.0 994,898 - Psest_0915 0.70 -1.3 994,976 + Psest_0915 0.88 -1.2 994,976 + Psest_0915 0.88 -1.2 994,977 - Psest_0915 0.88 +0.9 994,977 - Psest_0915 0.88 -0.8 994,977 - Psest_0915 0.88 -1.1 995,019 - -0.7 995,065 + +0.5 995,151 + -0.1 995,155 + -0.4 995,156 - -0.5 995,180 + -1.6 995,185 + -2.3 995,186 - -0.6 995,186 - +0.3 995,203 + +1.1 995,204 - -1.4 995,204 - +1.1 995,204 - +0.5 995,204 - -0.8 995,204 - -0.7 995,276 - +1.0 995,282 - +1.8 995,367 + -0.6 995,367 + +1.4 995,368 - -0.3 995,368 - +0.3 995,688 + Psest_0916 0.10 +0.2 995,881 - Psest_0916 0.32 -0.4 995,912 + Psest_0916 0.35 -1.1 995,912 + Psest_0916 0.35 -0.3 995,958 - Psest_0916 0.40 -0.5 996,021 + Psest_0916 0.48 -1.0 996,021 + Psest_0916 0.48 -0.0 996,021 + Psest_0916 0.48 -2.8 996,021 + Psest_0916 0.48 -2.4 996,022 - Psest_0916 0.48 -0.2 996,022 - Psest_0916 0.48 -0.2 996,022 - Psest_0916 0.48 +0.6 996,022 - Psest_0916 0.48 -1.2 996,022 - Psest_0916 0.48 +0.8 996,022 - Psest_0916 0.48 -0.5 996,022 - Psest_0916 0.48 -2.6 996,023 + Psest_0916 0.48 -1.0 996,023 + Psest_0916 0.48 +0.6 996,023 + Psest_0916 0.48 -0.2 996,024 - Psest_0916 0.48 -0.2 996,024 - Psest_0916 0.48 +0.2 996,024 - Psest_0916 0.48 +1.3
Or see this region's nucleotide sequence