Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0876 and Psest_0877 are separated by 40 nucleotides Psest_0877 and Psest_0879 are separated by 816 nucleotides
Psest_0876: Psest_0876 - Type III restriction enzyme, res subunit./Type I restriction enzyme R protein N terminus (HSDR_N)., at 953,599 to 956,793
_0876
Psest_0877: Psest_0877 - Restriction endonuclease, at 956,834 to 957,745
_0877
Psest_0879: Psest_0879 - Transcriptional regulator, at 958,562 to 959,458
_0879
Position (kb) 956
957
958 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 955.837 kb on + strand, within Psest_0876 at 955.840 kb on + strand, within Psest_0876 at 955.840 kb on + strand, within Psest_0876 at 955.840 kb on + strand, within Psest_0876 at 955.840 kb on + strand, within Psest_0876 at 955.841 kb on - strand, within Psest_0876 at 955.841 kb on - strand, within Psest_0876 at 955.841 kb on - strand, within Psest_0876 at 955.841 kb on - strand, within Psest_0876 at 955.841 kb on - strand, within Psest_0876 at 955.841 kb on - strand, within Psest_0876 at 955.841 kb on - strand, within Psest_0876 at 955.841 kb on - strand, within Psest_0876 at 955.885 kb on + strand, within Psest_0876 at 955.885 kb on + strand, within Psest_0876 at 955.885 kb on + strand, within Psest_0876 at 955.886 kb on - strand, within Psest_0876 at 955.886 kb on - strand, within Psest_0876 at 955.886 kb on - strand, within Psest_0876 at 955.922 kb on - strand, within Psest_0876 at 955.922 kb on - strand, within Psest_0876 at 955.922 kb on - strand, within Psest_0876 at 955.922 kb on - strand, within Psest_0876 at 955.993 kb on + strand, within Psest_0876 at 955.993 kb on + strand, within Psest_0876 at 955.993 kb on + strand, within Psest_0876 at 955.993 kb on + strand, within Psest_0876 at 955.993 kb on + strand, within Psest_0876 at 955.994 kb on - strand, within Psest_0876 at 955.994 kb on - strand, within Psest_0876 at 955.994 kb on - strand, within Psest_0876 at 955.994 kb on - strand, within Psest_0876 at 955.994 kb on - strand, within Psest_0876 at 955.994 kb on - strand, within Psest_0876 at 955.994 kb on - strand, within Psest_0876 at 955.996 kb on + strand, within Psest_0876 at 955.997 kb on - strand, within Psest_0876 at 956.231 kb on - strand, within Psest_0876 at 956.404 kb on + strand, within Psest_0876 at 956.404 kb on + strand, within Psest_0876 at 956.404 kb on + strand, within Psest_0876 at 956.405 kb on - strand, within Psest_0876 at 956.405 kb on - strand, within Psest_0876 at 956.440 kb on - strand, within Psest_0876 at 956.496 kb on + strand at 956.496 kb on + strand at 956.497 kb on - strand at 956.497 kb on - strand at 956.740 kb on + strand at 956.740 kb on + strand at 956.741 kb on - strand at 956.741 kb on - strand at 956.741 kb on - strand at 956.802 kb on + strand at 956.802 kb on + strand at 956.803 kb on - strand at 956.803 kb on - strand at 956.803 kb on - strand at 956.806 kb on + strand at 956.806 kb on + strand at 956.807 kb on - strand at 956.807 kb on - strand at 956.937 kb on + strand, within Psest_0877 at 956.938 kb on - strand, within Psest_0877 at 956.938 kb on - strand, within Psest_0877 at 957.026 kb on + strand, within Psest_0877 at 957.170 kb on - strand, within Psest_0877 at 957.170 kb on - strand, within Psest_0877 at 957.366 kb on - strand, within Psest_0877 at 957.467 kb on + strand, within Psest_0877 at 957.467 kb on + strand, within Psest_0877 at 957.467 kb on + strand, within Psest_0877 at 957.467 kb on + strand, within Psest_0877 at 957.468 kb on - strand, within Psest_0877 at 957.468 kb on - strand, within Psest_0877 at 957.468 kb on - strand, within Psest_0877 at 957.468 kb on - strand, within Psest_0877 at 957.468 kb on - strand, within Psest_0877 at 957.513 kb on + strand, within Psest_0877 at 957.514 kb on - strand, within Psest_0877 at 957.514 kb on - strand, within Psest_0877 at 957.561 kb on + strand, within Psest_0877 at 957.701 kb on + strand at 957.701 kb on + strand at 957.701 kb on + strand at 957.701 kb on + strand at 957.701 kb on + strand at 957.701 kb on + strand at 957.701 kb on + strand at 957.701 kb on + strand at 957.702 kb on - strand at 957.702 kb on - strand at 957.702 kb on - strand at 957.702 kb on - strand at 957.702 kb on - strand at 957.702 kb on - strand at 957.729 kb on - strand at 957.729 kb on - strand at 957.995 kb on + strand at 957.996 kb on - strand at 958.041 kb on + strand at 958.041 kb on + strand at 958.041 kb on + strand at 958.041 kb on + strand at 958.042 kb on - strand at 958.042 kb on - strand at 958.042 kb on - strand at 958.042 kb on - strand at 958.042 kb on - strand at 958.042 kb on - strand at 958.042 kb on - strand at 958.043 kb on + strand at 958.043 kb on + strand at 958.043 kb on + strand at 958.043 kb on + strand at 958.043 kb on + strand at 958.044 kb on - strand at 958.044 kb on - strand at 958.044 kb on - strand at 958.044 kb on - strand at 958.044 kb on - strand at 958.044 kb on - strand at 958.044 kb on - strand at 958.044 kb on - strand at 958.044 kb on - strand at 958.044 kb on - strand at 958.081 kb on + strand at 958.081 kb on + strand at 958.115 kb on + strand at 958.115 kb on + strand at 958.116 kb on - strand at 958.116 kb on - strand at 958.180 kb on - strand at 958.190 kb on + strand at 958.190 kb on + strand at 958.190 kb on + strand at 958.191 kb on - strand at 958.191 kb on - strand at 958.191 kb on - strand at 958.191 kb on - strand at 958.191 kb on - strand at 958.211 kb on + strand at 958.211 kb on + strand at 958.211 kb on + strand at 958.212 kb on - strand at 958.212 kb on - strand at 958.212 kb on - strand at 958.212 kb on - strand at 958.238 kb on + strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.257 kb on + strand at 958.258 kb on - strand at 958.265 kb on + strand at 958.266 kb on - strand at 958.266 kb on - strand at 958.266 kb on - strand at 958.388 kb on + strand at 958.465 kb on + strand at 958.465 kb on + strand at 958.465 kb on + strand at 958.465 kb on + strand at 958.466 kb on - strand at 958.466 kb on - strand at 958.466 kb on - strand at 958.466 kb on - strand at 958.511 kb on - strand at 958.530 kb on + strand at 958.680 kb on + strand, within Psest_0879 at 958.745 kb on + strand, within Psest_0879
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 955,837 + Psest_0876 0.70 -0.6 955,840 + Psest_0876 0.70 -1.0 955,840 + Psest_0876 0.70 -0.9 955,840 + Psest_0876 0.70 +1.1 955,840 + Psest_0876 0.70 -0.6 955,841 - Psest_0876 0.70 +0.4 955,841 - Psest_0876 0.70 +0.8 955,841 - Psest_0876 0.70 -1.4 955,841 - Psest_0876 0.70 +1.1 955,841 - Psest_0876 0.70 -0.5 955,841 - Psest_0876 0.70 -0.1 955,841 - Psest_0876 0.70 -0.4 955,841 - Psest_0876 0.70 -1.9 955,885 + Psest_0876 0.72 +0.3 955,885 + Psest_0876 0.72 +1.6 955,885 + Psest_0876 0.72 -1.6 955,886 - Psest_0876 0.72 +0.2 955,886 - Psest_0876 0.72 -0.5 955,886 - Psest_0876 0.72 +0.6 955,922 - Psest_0876 0.73 -0.6 955,922 - Psest_0876 0.73 -1.1 955,922 - Psest_0876 0.73 -0.6 955,922 - Psest_0876 0.73 -0.6 955,993 + Psest_0876 0.75 +1.6 955,993 + Psest_0876 0.75 -0.6 955,993 + Psest_0876 0.75 -0.2 955,993 + Psest_0876 0.75 +0.9 955,993 + Psest_0876 0.75 +0.3 955,994 - Psest_0876 0.75 -0.9 955,994 - Psest_0876 0.75 +1.5 955,994 - Psest_0876 0.75 -0.2 955,994 - Psest_0876 0.75 +0.8 955,994 - Psest_0876 0.75 +1.2 955,994 - Psest_0876 0.75 -0.7 955,994 - Psest_0876 0.75 +1.0 955,996 + Psest_0876 0.75 +0.5 955,997 - Psest_0876 0.75 -0.8 956,231 - Psest_0876 0.82 -0.3 956,404 + Psest_0876 0.88 +2.2 956,404 + Psest_0876 0.88 -0.7 956,404 + Psest_0876 0.88 -0.6 956,405 - Psest_0876 0.88 -0.2 956,405 - Psest_0876 0.88 +0.2 956,440 - Psest_0876 0.89 +1.1 956,496 + -0.9 956,496 + -1.0 956,497 - +0.3 956,497 - +0.7 956,740 + +0.9 956,740 + +0.3 956,741 - -0.3 956,741 - -0.4 956,741 - -1.9 956,802 + +0.7 956,802 + +0.4 956,803 - +0.5 956,803 - -0.8 956,803 - +1.7 956,806 + +0.8 956,806 + +1.3 956,807 - -1.6 956,807 - -1.1 956,937 + Psest_0877 0.11 +1.0 956,938 - Psest_0877 0.11 -0.2 956,938 - Psest_0877 0.11 -1.6 957,026 + Psest_0877 0.21 -0.6 957,170 - Psest_0877 0.37 +1.9 957,170 - Psest_0877 0.37 -0.7 957,366 - Psest_0877 0.58 -1.8 957,467 + Psest_0877 0.69 -0.6 957,467 + Psest_0877 0.69 -0.4 957,467 + Psest_0877 0.69 -1.3 957,467 + Psest_0877 0.69 -2.1 957,468 - Psest_0877 0.70 -0.6 957,468 - Psest_0877 0.70 +0.2 957,468 - Psest_0877 0.70 +0.4 957,468 - Psest_0877 0.70 +0.4 957,468 - Psest_0877 0.70 -0.0 957,513 + Psest_0877 0.74 -1.3 957,514 - Psest_0877 0.75 -2.2 957,514 - Psest_0877 0.75 -0.6 957,561 + Psest_0877 0.80 -0.7 957,701 + -0.2 957,701 + -0.6 957,701 + -0.3 957,701 + -2.0 957,701 + -1.9 957,701 + -1.0 957,701 + +0.2 957,701 + +1.1 957,702 - +0.8 957,702 - +0.8 957,702 - -0.8 957,702 - +0.2 957,702 - +0.5 957,702 - +1.5 957,729 - -1.2 957,729 - +0.5 957,995 + -0.6 957,996 - -0.1 958,041 + -0.1 958,041 + -0.7 958,041 + +2.2 958,041 + -1.0 958,042 - +0.5 958,042 - -0.7 958,042 - -0.8 958,042 - +0.3 958,042 - +0.4 958,042 - +0.8 958,042 - +4.3 958,043 + +0.3 958,043 + -1.2 958,043 + +1.6 958,043 + +0.7 958,043 + -1.0 958,044 - +1.4 958,044 - -0.6 958,044 - -0.6 958,044 - +0.4 958,044 - +0.2 958,044 - -0.7 958,044 - +0.2 958,044 - -1.4 958,044 - -0.2 958,044 - +0.0 958,081 + +0.8 958,081 + +0.4 958,115 + +0.2 958,115 + -0.4 958,116 - +0.2 958,116 - +1.7 958,180 - -1.2 958,190 + +1.5 958,190 + -1.2 958,190 + -1.3 958,191 - +1.3 958,191 - +1.4 958,191 - -0.2 958,191 - -0.0 958,191 - -0.5 958,211 + +1.4 958,211 + +0.2 958,211 + +0.0 958,212 - +0.8 958,212 - +0.4 958,212 - -0.4 958,212 - -1.5 958,238 + -2.1 958,239 - +2.2 958,239 - +0.0 958,257 + -0.4 958,258 - +0.6 958,265 + +0.9 958,266 - +1.1 958,266 - +0.8 958,266 - -1.0 958,388 + +1.1 958,465 + +0.4 958,465 + -0.5 958,465 + +0.8 958,465 + +1.2 958,466 - -1.0 958,466 - +0.0 958,466 - +0.7 958,466 - -0.2 958,511 - -0.2 958,530 + +0.0 958,680 + Psest_0879 0.13 -0.2 958,745 + Psest_0879 0.20 -1.4
Or see this region's nucleotide sequence