Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3085 and Psest_3086 are separated by 12 nucleotides Psest_3086 and Psest_3087 are separated by 134 nucleotides Psest_3087 and Psest_3088 overlap by 16 nucleotides Psest_3088 and Psest_3089 are separated by 127 nucleotides
Psest_3085: Psest_3085 - methyltransferase, putative, at 3,265,932 to 3,266,894
_3085
Psest_3086: Psest_3086 - hypothetical protein, at 3,266,907 to 3,267,182
_3086
Psest_3087: Psest_3087 - Transcriptional regulator, at 3,267,317 to 3,268,273
_3087
Psest_3088: Psest_3088 - Protein of unknown function (DUF2905)., at 3,268,258 to 3,268,464
_3088
Psest_3089: Psest_3089 - pyridoxine 5'-phosphate synthase, at 3,268,592 to 3,269,338
_3089
Position (kb)
3267
3268
3269 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3266.326 kb on - strand, within Psest_3085 at 3266.328 kb on + strand, within Psest_3085 at 3266.328 kb on + strand, within Psest_3085 at 3266.328 kb on + strand, within Psest_3085 at 3266.328 kb on + strand, within Psest_3085 at 3266.328 kb on + strand, within Psest_3085 at 3266.328 kb on + strand, within Psest_3085 at 3266.328 kb on + strand, within Psest_3085 at 3266.328 kb on + strand, within Psest_3085 at 3266.328 kb on + strand, within Psest_3085 at 3266.328 kb on + strand, within Psest_3085 at 3266.328 kb on + strand, within Psest_3085 at 3266.328 kb on + strand, within Psest_3085 at 3266.328 kb on + strand, within Psest_3085 at 3266.328 kb on + strand, within Psest_3085 at 3266.328 kb on + strand, within Psest_3085 at 3266.329 kb on - strand, within Psest_3085 at 3266.329 kb on - strand, within Psest_3085 at 3266.329 kb on - strand, within Psest_3085 at 3266.329 kb on - strand, within Psest_3085 at 3266.329 kb on - strand, within Psest_3085 at 3266.329 kb on - strand, within Psest_3085 at 3266.329 kb on - strand, within Psest_3085 at 3266.329 kb on - strand, within Psest_3085 at 3266.329 kb on - strand, within Psest_3085 at 3266.329 kb on - strand, within Psest_3085 at 3266.329 kb on - strand, within Psest_3085 at 3266.329 kb on - strand, within Psest_3085 at 3266.329 kb on - strand, within Psest_3085 at 3266.520 kb on + strand, within Psest_3085 at 3266.893 kb on - strand at 3267.093 kb on - strand, within Psest_3086 at 3267.117 kb on - strand, within Psest_3086 at 3267.118 kb on + strand, within Psest_3086 at 3267.118 kb on + strand, within Psest_3086 at 3267.118 kb on + strand, within Psest_3086 at 3267.118 kb on + strand, within Psest_3086 at 3267.118 kb on + strand, within Psest_3086 at 3267.118 kb on + strand, within Psest_3086 at 3267.118 kb on + strand, within Psest_3086 at 3267.119 kb on - strand, within Psest_3086 at 3267.119 kb on - strand, within Psest_3086 at 3267.119 kb on - strand, within Psest_3086 at 3267.119 kb on - strand, within Psest_3086 at 3267.119 kb on - strand, within Psest_3086 at 3267.119 kb on - strand, within Psest_3086 at 3267.119 kb on - strand, within Psest_3086 at 3267.280 kb on + strand at 3267.280 kb on + strand at 3267.280 kb on + strand at 3267.281 kb on - strand at 3267.437 kb on + strand, within Psest_3087 at 3267.437 kb on + strand, within Psest_3087 at 3267.532 kb on + strand, within Psest_3087 at 3267.661 kb on + strand, within Psest_3087 at 3267.667 kb on + strand, within Psest_3087 at 3267.837 kb on + strand, within Psest_3087 at 3267.837 kb on + strand, within Psest_3087 at 3267.838 kb on - strand, within Psest_3087 at 3267.841 kb on + strand, within Psest_3087 at 3267.841 kb on + strand, within Psest_3087 at 3267.841 kb on + strand, within Psest_3087 at 3267.983 kb on - strand, within Psest_3087 at 3268.038 kb on + strand, within Psest_3087 at 3268.293 kb on - strand, within Psest_3088 at 3268.318 kb on + strand, within Psest_3088 at 3268.319 kb on - strand, within Psest_3088 at 3268.319 kb on - strand, within Psest_3088 at 3268.319 kb on - strand, within Psest_3088 at 3268.319 kb on - strand, within Psest_3088 at 3268.475 kb on - strand at 3268.564 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 3,266,326 - Psest_3085 0.41 -0.7 3,266,328 + Psest_3085 0.41 +0.9 3,266,328 + Psest_3085 0.41 -1.3 3,266,328 + Psest_3085 0.41 +1.5 3,266,328 + Psest_3085 0.41 +0.7 3,266,328 + Psest_3085 0.41 +0.6 3,266,328 + Psest_3085 0.41 +0.1 3,266,328 + Psest_3085 0.41 +0.4 3,266,328 + Psest_3085 0.41 +0.2 3,266,328 + Psest_3085 0.41 -0.1 3,266,328 + Psest_3085 0.41 +0.4 3,266,328 + Psest_3085 0.41 -1.1 3,266,328 + Psest_3085 0.41 +0.2 3,266,328 + Psest_3085 0.41 +0.3 3,266,328 + Psest_3085 0.41 -3.0 3,266,328 + Psest_3085 0.41 +0.8 3,266,329 - Psest_3085 0.41 -0.8 3,266,329 - Psest_3085 0.41 -0.9 3,266,329 - Psest_3085 0.41 +1.3 3,266,329 - Psest_3085 0.41 +1.4 3,266,329 - Psest_3085 0.41 +0.6 3,266,329 - Psest_3085 0.41 -1.6 3,266,329 - Psest_3085 0.41 +3.0 3,266,329 - Psest_3085 0.41 +0.4 3,266,329 - Psest_3085 0.41 +0.9 3,266,329 - Psest_3085 0.41 -2.3 3,266,329 - Psest_3085 0.41 -0.4 3,266,329 - Psest_3085 0.41 +0.5 3,266,329 - Psest_3085 0.41 -1.5 3,266,520 + Psest_3085 0.61 +0.4 3,266,893 - -1.0 3,267,093 - Psest_3086 0.67 +0.7 3,267,117 - Psest_3086 0.76 -0.9 3,267,118 + Psest_3086 0.76 -1.3 3,267,118 + Psest_3086 0.76 -0.8 3,267,118 + Psest_3086 0.76 -0.8 3,267,118 + Psest_3086 0.76 +1.0 3,267,118 + Psest_3086 0.76 -1.5 3,267,118 + Psest_3086 0.76 -0.3 3,267,118 + Psest_3086 0.76 +1.4 3,267,119 - Psest_3086 0.77 -1.0 3,267,119 - Psest_3086 0.77 +0.1 3,267,119 - Psest_3086 0.77 -0.2 3,267,119 - Psest_3086 0.77 +0.3 3,267,119 - Psest_3086 0.77 +1.7 3,267,119 - Psest_3086 0.77 +0.8 3,267,119 - Psest_3086 0.77 +0.3 3,267,280 + +0.4 3,267,280 + +0.5 3,267,280 + -1.8 3,267,281 - -1.1 3,267,437 + Psest_3087 0.13 -1.0 3,267,437 + Psest_3087 0.13 -0.0 3,267,532 + Psest_3087 0.22 +0.2 3,267,661 + Psest_3087 0.36 -1.9 3,267,667 + Psest_3087 0.37 -1.8 3,267,837 + Psest_3087 0.54 -0.6 3,267,837 + Psest_3087 0.54 +0.5 3,267,838 - Psest_3087 0.54 +1.0 3,267,841 + Psest_3087 0.55 -0.3 3,267,841 + Psest_3087 0.55 -0.1 3,267,841 + Psest_3087 0.55 -0.7 3,267,983 - Psest_3087 0.70 +0.3 3,268,038 + Psest_3087 0.75 -0.4 3,268,293 - Psest_3088 0.17 -2.5 3,268,318 + Psest_3088 0.29 +0.1 3,268,319 - Psest_3088 0.29 -0.3 3,268,319 - Psest_3088 0.29 -1.5 3,268,319 - Psest_3088 0.29 -0.6 3,268,319 - Psest_3088 0.29 +0.5 3,268,475 - -1.2 3,268,564 - +1.3
Or see this region's nucleotide sequence