Experiment: Paraquat dichloride 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0868 and Psest_0869 are separated by 174 nucleotides Psest_0869 and Psest_0870 are separated by 150 nucleotides Psest_0870 and Psest_0871 are separated by 81 nucleotides
Psest_0868: Psest_0868 - Glutathione S-transferase, at 944,030 to 944,653
_0868
Psest_0869: Psest_0869 - Acetyltransferase (isoleucine patch superfamily), at 944,828 to 945,376
_0869
Psest_0870: Psest_0870 - Alpha-glucosidase (EC 3.2.1.20) <small>(from data)</small>, at 945,527 to 947,155
_0870
Psest_0871: Psest_0871 - maltose ABC transporter, ATPase component MalK <small>(from data)</small>, at 947,237 to 948,352
_0871
Position (kb) 945
946
947
948 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 944.582 kb on + strand, within Psest_0868 at 944.582 kb on + strand, within Psest_0868 at 944.582 kb on + strand, within Psest_0868 at 944.582 kb on + strand, within Psest_0868 at 944.583 kb on - strand, within Psest_0868 at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.632 kb on + strand at 944.633 kb on - strand at 944.633 kb on - strand at 944.633 kb on - strand at 944.633 kb on - strand at 944.633 kb on - strand at 944.633 kb on - strand at 944.633 kb on - strand at 944.633 kb on - strand at 944.633 kb on - strand at 944.633 kb on - strand at 944.634 kb on + strand at 944.634 kb on + strand at 944.634 kb on + strand at 944.870 kb on + strand at 944.870 kb on + strand at 944.870 kb on + strand at 944.870 kb on + strand at 944.871 kb on - strand at 944.871 kb on - strand at 944.871 kb on - strand at 944.871 kb on - strand at 944.874 kb on - strand at 944.933 kb on + strand, within Psest_0869 at 945.158 kb on + strand, within Psest_0869 at 945.158 kb on + strand, within Psest_0869 at 945.159 kb on - strand, within Psest_0869 at 945.420 kb on + strand at 945.484 kb on + strand at 945.484 kb on + strand at 945.484 kb on + strand at 945.485 kb on - strand at 945.514 kb on + strand at 945.514 kb on + strand at 945.514 kb on + strand at 945.514 kb on + strand at 945.514 kb on + strand at 945.514 kb on + strand at 945.514 kb on + strand at 945.515 kb on - strand at 945.515 kb on - strand at 945.515 kb on - strand at 945.515 kb on - strand at 945.515 kb on - strand at 945.515 kb on - strand at 945.515 kb on - strand at 945.519 kb on - strand at 945.519 kb on - strand at 945.569 kb on + strand at 945.569 kb on + strand at 945.569 kb on + strand at 945.579 kb on - strand at 945.579 kb on - strand at 945.586 kb on + strand at 945.586 kb on + strand at 945.586 kb on + strand at 945.587 kb on - strand at 945.587 kb on - strand at 945.587 kb on - strand at 945.650 kb on + strand at 945.650 kb on + strand at 945.650 kb on + strand at 945.650 kb on + strand at 945.650 kb on + strand at 945.912 kb on - strand, within Psest_0870 at 945.912 kb on - strand, within Psest_0870 at 945.912 kb on - strand, within Psest_0870 at 946.011 kb on - strand, within Psest_0870 at 946.011 kb on - strand, within Psest_0870 at 946.014 kb on - strand, within Psest_0870 at 946.014 kb on - strand, within Psest_0870 at 946.014 kb on - strand, within Psest_0870 at 946.014 kb on - strand, within Psest_0870 at 946.014 kb on - strand, within Psest_0870 at 946.014 kb on - strand, within Psest_0870 at 946.148 kb on + strand, within Psest_0870 at 946.148 kb on + strand, within Psest_0870 at 946.149 kb on - strand, within Psest_0870 at 946.149 kb on - strand, within Psest_0870 at 946.149 kb on - strand, within Psest_0870 at 946.249 kb on + strand, within Psest_0870 at 946.249 kb on + strand, within Psest_0870 at 946.250 kb on - strand, within Psest_0870 at 946.250 kb on - strand, within Psest_0870 at 946.250 kb on - strand, within Psest_0870 at 946.253 kb on + strand, within Psest_0870 at 946.253 kb on + strand, within Psest_0870 at 946.253 kb on + strand, within Psest_0870 at 946.253 kb on + strand, within Psest_0870 at 946.253 kb on + strand, within Psest_0870 at 946.253 kb on + strand, within Psest_0870 at 946.253 kb on + strand, within Psest_0870 at 946.253 kb on + strand, within Psest_0870 at 946.254 kb on - strand, within Psest_0870 at 946.412 kb on + strand, within Psest_0870 at 946.451 kb on + strand, within Psest_0870 at 946.634 kb on + strand, within Psest_0870 at 946.634 kb on + strand, within Psest_0870 at 946.634 kb on + strand, within Psest_0870 at 946.634 kb on + strand, within Psest_0870 at 946.635 kb on - strand, within Psest_0870 at 946.635 kb on - strand, within Psest_0870 at 946.635 kb on - strand, within Psest_0870 at 946.635 kb on - strand, within Psest_0870 at 946.635 kb on - strand, within Psest_0870 at 946.705 kb on + strand, within Psest_0870 at 946.946 kb on + strand, within Psest_0870 at 946.947 kb on - strand, within Psest_0870 at 946.947 kb on - strand, within Psest_0870 at 946.947 kb on - strand, within Psest_0870 at 946.947 kb on - strand, within Psest_0870 at 946.947 kb on - strand, within Psest_0870 at 947.073 kb on + strand at 947.094 kb on - strand at 947.135 kb on + strand at 947.199 kb on + strand at 947.233 kb on - strand at 947.233 kb on - strand at 947.273 kb on + strand at 947.273 kb on + strand at 947.274 kb on - strand at 947.274 kb on - strand at 947.486 kb on + strand, within Psest_0871 at 947.486 kb on + strand, within Psest_0871 at 947.486 kb on + strand, within Psest_0871 at 947.801 kb on + strand, within Psest_0871 at 947.801 kb on + strand, within Psest_0871 at 947.801 kb on + strand, within Psest_0871 at 947.801 kb on + strand, within Psest_0871 at 947.801 kb on + strand, within Psest_0871 at 947.801 kb on + strand, within Psest_0871 at 947.802 kb on - strand, within Psest_0871 at 947.802 kb on - strand, within Psest_0871 at 947.802 kb on - strand, within Psest_0871 at 947.802 kb on - strand, within Psest_0871 at 947.802 kb on - strand, within Psest_0871 at 947.802 kb on - strand, within Psest_0871 at 947.802 kb on - strand, within Psest_0871 at 947.802 kb on - strand, within Psest_0871 at 947.901 kb on - strand, within Psest_0871
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.015 mg/ml remove 944,582 + Psest_0868 0.88 -0.5 944,582 + Psest_0868 0.88 -0.4 944,582 + Psest_0868 0.88 +2.5 944,582 + Psest_0868 0.88 +0.3 944,583 - Psest_0868 0.89 -0.9 944,632 + -1.4 944,632 + +1.1 944,632 + -0.6 944,632 + +0.4 944,632 + +1.1 944,632 + -1.4 944,632 + +0.2 944,632 + -0.6 944,632 + -1.7 944,632 + -0.8 944,632 + -1.4 944,632 + +0.1 944,632 + -1.6 944,632 + -1.4 944,633 - -0.7 944,633 - +1.6 944,633 - +2.1 944,633 - -0.6 944,633 - -0.9 944,633 - -1.9 944,633 - -0.9 944,633 - -0.1 944,633 - -2.9 944,633 - -2.1 944,634 + +2.0 944,634 + -1.0 944,634 + +0.8 944,870 + +1.5 944,870 + -0.4 944,870 + -4.1 944,870 + -2.7 944,871 - +0.9 944,871 - -0.4 944,871 - -0.2 944,871 - -0.4 944,874 - +0.8 944,933 + Psest_0869 0.19 -1.1 945,158 + Psest_0869 0.60 -0.1 945,158 + Psest_0869 0.60 -1.5 945,159 - Psest_0869 0.60 -0.1 945,420 + +2.8 945,484 + +0.8 945,484 + +1.3 945,484 + +1.3 945,485 - +0.6 945,514 + -0.8 945,514 + -0.3 945,514 + +0.0 945,514 + +0.1 945,514 + +0.3 945,514 + +0.8 945,514 + -0.8 945,515 - -1.3 945,515 - +1.4 945,515 - -0.9 945,515 - +1.9 945,515 - +0.2 945,515 - +0.9 945,515 - -1.2 945,519 - +0.2 945,519 - -1.5 945,569 + +1.5 945,569 + -0.2 945,569 + -2.7 945,579 - +0.4 945,579 - +0.6 945,586 + -1.7 945,586 + +1.4 945,586 + -1.0 945,587 - +1.6 945,587 - -0.3 945,587 - -0.4 945,650 + +0.6 945,650 + +0.2 945,650 + -1.9 945,650 + -1.5 945,650 + +0.5 945,912 - Psest_0870 0.24 -0.5 945,912 - Psest_0870 0.24 -0.6 945,912 - Psest_0870 0.24 +0.3 946,011 - Psest_0870 0.30 -0.1 946,011 - Psest_0870 0.30 -0.9 946,014 - Psest_0870 0.30 -0.3 946,014 - Psest_0870 0.30 +0.8 946,014 - Psest_0870 0.30 -2.7 946,014 - Psest_0870 0.30 -0.9 946,014 - Psest_0870 0.30 -0.0 946,014 - Psest_0870 0.30 -1.3 946,148 + Psest_0870 0.38 -0.4 946,148 + Psest_0870 0.38 +1.8 946,149 - Psest_0870 0.38 -1.8 946,149 - Psest_0870 0.38 +0.8 946,149 - Psest_0870 0.38 -1.1 946,249 + Psest_0870 0.44 -0.4 946,249 + Psest_0870 0.44 -0.8 946,250 - Psest_0870 0.44 -0.2 946,250 - Psest_0870 0.44 -2.4 946,250 - Psest_0870 0.44 -0.4 946,253 + Psest_0870 0.45 -0.4 946,253 + Psest_0870 0.45 +0.9 946,253 + Psest_0870 0.45 -1.5 946,253 + Psest_0870 0.45 -1.6 946,253 + Psest_0870 0.45 -2.5 946,253 + Psest_0870 0.45 -1.8 946,253 + Psest_0870 0.45 -0.7 946,253 + Psest_0870 0.45 +0.1 946,254 - Psest_0870 0.45 +1.2 946,412 + Psest_0870 0.54 -1.0 946,451 + Psest_0870 0.57 -3.1 946,634 + Psest_0870 0.68 +0.4 946,634 + Psest_0870 0.68 -1.2 946,634 + Psest_0870 0.68 +1.7 946,634 + Psest_0870 0.68 -0.2 946,635 - Psest_0870 0.68 -1.2 946,635 - Psest_0870 0.68 +4.4 946,635 - Psest_0870 0.68 -2.3 946,635 - Psest_0870 0.68 +2.3 946,635 - Psest_0870 0.68 -1.1 946,705 + Psest_0870 0.72 +1.8 946,946 + Psest_0870 0.87 -0.2 946,947 - Psest_0870 0.87 -1.4 946,947 - Psest_0870 0.87 -2.4 946,947 - Psest_0870 0.87 +0.1 946,947 - Psest_0870 0.87 -3.0 946,947 - Psest_0870 0.87 +2.0 947,073 + -0.3 947,094 - +2.8 947,135 + +0.2 947,199 + -0.2 947,233 - +0.3 947,233 - +1.5 947,273 + -1.0 947,273 + +1.3 947,274 - +1.5 947,274 - +1.2 947,486 + Psest_0871 0.22 -0.6 947,486 + Psest_0871 0.22 -1.7 947,486 + Psest_0871 0.22 +1.7 947,801 + Psest_0871 0.51 +2.1 947,801 + Psest_0871 0.51 +1.9 947,801 + Psest_0871 0.51 +1.4 947,801 + Psest_0871 0.51 +0.7 947,801 + Psest_0871 0.51 +0.7 947,801 + Psest_0871 0.51 -1.0 947,802 - Psest_0871 0.51 -0.2 947,802 - Psest_0871 0.51 +0.2 947,802 - Psest_0871 0.51 -1.7 947,802 - Psest_0871 0.51 -2.0 947,802 - Psest_0871 0.51 -0.6 947,802 - Psest_0871 0.51 +3.2 947,802 - Psest_0871 0.51 -0.4 947,802 - Psest_0871 0.51 +0.9 947,901 - Psest_0871 0.59 -1.7
Or see this region's nucleotide sequence