Experiment: Paraquat dichloride 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0797 and Psest_0798 are separated by 45 nucleotides Psest_0798 and Psest_0799 are separated by 322 nucleotides Psest_0799 and Psest_0800 are separated by 118 nucleotides
Psest_0797: Psest_0797 - Predicted lipoprotein involved in nitrous oxide reduction, at 872,302 to 872,874
_0797
Psest_0798: Psest_0798 - twin arginine-targeting protein translocase, TatA/E family, at 872,920 to 873,102
_0798
Psest_0799: Psest_0799 - Uncharacterized protein involved in response to NO, at 873,425 to 874,615
_0799
Psest_0800: Psest_0800 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 874,734 to 875,477
_0800
Position (kb) 873
874
875 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 872.581 kb on + strand, within Psest_0797 at 872.581 kb on + strand, within Psest_0797 at 872.581 kb on + strand, within Psest_0797 at 872.581 kb on + strand, within Psest_0797 at 872.581 kb on + strand, within Psest_0797 at 872.582 kb on - strand, within Psest_0797 at 872.582 kb on - strand, within Psest_0797 at 872.582 kb on - strand, within Psest_0797 at 872.582 kb on - strand, within Psest_0797 at 872.653 kb on + strand, within Psest_0797 at 872.653 kb on + strand, within Psest_0797 at 872.654 kb on - strand, within Psest_0797 at 872.654 kb on - strand, within Psest_0797 at 872.654 kb on - strand, within Psest_0797 at 872.654 kb on - strand, within Psest_0797 at 872.654 kb on - strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.656 kb on + strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.657 kb on - strand, within Psest_0797 at 872.912 kb on - strand at 872.928 kb on + strand at 873.100 kb on + strand at 873.100 kb on + strand at 873.101 kb on - strand at 873.191 kb on - strand at 873.270 kb on + strand at 873.271 kb on - strand at 873.271 kb on - strand at 873.271 kb on - strand at 873.320 kb on + strand at 873.320 kb on + strand at 873.320 kb on + strand at 873.328 kb on - strand at 873.334 kb on + strand at 873.334 kb on + strand at 873.335 kb on - strand at 873.335 kb on - strand at 873.335 kb on - strand at 873.335 kb on - strand at 873.335 kb on - strand at 873.335 kb on - strand at 873.351 kb on + strand at 873.388 kb on + strand at 873.388 kb on + strand at 873.388 kb on + strand at 873.388 kb on + strand at 873.389 kb on - strand at 873.389 kb on - strand at 873.389 kb on - strand at 873.389 kb on - strand at 873.432 kb on + strand at 873.432 kb on + strand at 873.433 kb on - strand at 873.457 kb on + strand at 873.853 kb on + strand, within Psest_0799 at 873.853 kb on + strand, within Psest_0799 at 873.854 kb on - strand, within Psest_0799 at 873.854 kb on - strand, within Psest_0799 at 874.208 kb on + strand, within Psest_0799 at 874.252 kb on + strand, within Psest_0799 at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.596 kb on + strand at 874.597 kb on - strand at 874.664 kb on + strand at 874.664 kb on + strand at 874.664 kb on + strand at 874.664 kb on + strand at 874.665 kb on - strand at 874.668 kb on + strand at 875.078 kb on + strand, within Psest_0800 at 875.078 kb on + strand, within Psest_0800 at 875.079 kb on - strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.176 kb on - strand, within Psest_0800 at 875.176 kb on - strand, within Psest_0800 at 875.176 kb on - strand, within Psest_0800 at 875.176 kb on - strand, within Psest_0800 at 875.176 kb on - strand, within Psest_0800 at 875.176 kb on - strand, within Psest_0800 at 875.178 kb on - strand, within Psest_0800 at 875.249 kb on + strand, within Psest_0800 at 875.465 kb on + strand at 875.465 kb on + strand at 875.465 kb on + strand at 875.465 kb on + strand at 875.465 kb on + strand at 875.465 kb on + strand at 875.466 kb on - strand at 875.466 kb on - strand at 875.466 kb on - strand at 875.466 kb on - strand at 875.466 kb on - strand at 875.466 kb on - strand at 875.466 kb on - strand at 875.598 kb on + strand at 875.599 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.015 mg/ml remove 872,581 + Psest_0797 0.49 +0.8 872,581 + Psest_0797 0.49 +1.3 872,581 + Psest_0797 0.49 +3.2 872,581 + Psest_0797 0.49 +0.0 872,581 + Psest_0797 0.49 -1.1 872,582 - Psest_0797 0.49 -2.0 872,582 - Psest_0797 0.49 +0.8 872,582 - Psest_0797 0.49 -1.9 872,582 - Psest_0797 0.49 -1.2 872,653 + Psest_0797 0.61 +0.1 872,653 + Psest_0797 0.61 -1.4 872,654 - Psest_0797 0.61 +0.9 872,654 - Psest_0797 0.61 +0.9 872,654 - Psest_0797 0.61 +3.7 872,654 - Psest_0797 0.61 -1.8 872,654 - Psest_0797 0.61 -1.4 872,656 + Psest_0797 0.62 +2.3 872,656 + Psest_0797 0.62 +0.3 872,656 + Psest_0797 0.62 +0.3 872,656 + Psest_0797 0.62 -0.6 872,656 + Psest_0797 0.62 +3.4 872,656 + Psest_0797 0.62 -1.0 872,656 + Psest_0797 0.62 -1.5 872,656 + Psest_0797 0.62 -1.2 872,656 + Psest_0797 0.62 -0.2 872,656 + Psest_0797 0.62 +3.7 872,657 - Psest_0797 0.62 -0.3 872,657 - Psest_0797 0.62 -2.1 872,657 - Psest_0797 0.62 +1.6 872,657 - Psest_0797 0.62 -1.3 872,657 - Psest_0797 0.62 -1.5 872,657 - Psest_0797 0.62 -0.7 872,657 - Psest_0797 0.62 -0.8 872,657 - Psest_0797 0.62 -0.9 872,657 - Psest_0797 0.62 -2.6 872,657 - Psest_0797 0.62 -2.1 872,657 - Psest_0797 0.62 +1.2 872,657 - Psest_0797 0.62 +1.7 872,657 - Psest_0797 0.62 +2.4 872,657 - Psest_0797 0.62 +2.3 872,657 - Psest_0797 0.62 -0.0 872,657 - Psest_0797 0.62 -1.8 872,912 - +2.4 872,928 + -0.4 873,100 + -1.1 873,100 + -0.8 873,101 - +2.4 873,191 - +0.6 873,270 + -0.6 873,271 - -2.4 873,271 - +2.3 873,271 - -2.4 873,320 + -0.5 873,320 + +1.1 873,320 + +3.0 873,328 - -2.9 873,334 + +0.2 873,334 + -0.3 873,335 - +0.7 873,335 - -2.6 873,335 - -1.1 873,335 - -1.5 873,335 - +0.6 873,335 - -0.3 873,351 + -2.4 873,388 + +0.5 873,388 + +0.3 873,388 + -0.9 873,388 + -0.2 873,389 - -2.8 873,389 - +0.2 873,389 - +0.1 873,389 - -1.0 873,432 + +1.1 873,432 + +3.0 873,433 - -2.1 873,457 + -1.3 873,853 + Psest_0799 0.36 +1.2 873,853 + Psest_0799 0.36 +0.1 873,854 - Psest_0799 0.36 +1.3 873,854 - Psest_0799 0.36 -0.2 874,208 + Psest_0799 0.66 -0.4 874,252 + Psest_0799 0.69 +1.1 874,556 + -2.6 874,556 + +0.0 874,556 + +0.0 874,556 + +1.2 874,556 + +2.7 874,556 + -1.1 874,556 + +2.3 874,556 + +0.0 874,556 + -1.3 874,556 + -0.3 874,557 - -0.6 874,557 - +0.8 874,557 - -1.5 874,557 - -1.9 874,557 - +0.9 874,557 - +0.4 874,557 - -0.6 874,557 - -1.0 874,557 - -1.5 874,596 + -0.1 874,597 - +0.8 874,664 + +1.1 874,664 + +0.7 874,664 + -1.2 874,664 + -0.1 874,665 - -0.7 874,668 + +0.5 875,078 + Psest_0800 0.46 -0.9 875,078 + Psest_0800 0.46 +1.7 875,079 - Psest_0800 0.46 +1.2 875,175 + Psest_0800 0.59 +0.5 875,175 + Psest_0800 0.59 +1.2 875,175 + Psest_0800 0.59 +0.9 875,175 + Psest_0800 0.59 -0.4 875,175 + Psest_0800 0.59 +0.7 875,175 + Psest_0800 0.59 +0.3 875,175 + Psest_0800 0.59 -2.3 875,175 + Psest_0800 0.59 -0.6 875,176 - Psest_0800 0.59 -0.3 875,176 - Psest_0800 0.59 +2.2 875,176 - Psest_0800 0.59 +2.0 875,176 - Psest_0800 0.59 +1.4 875,176 - Psest_0800 0.59 -1.9 875,176 - Psest_0800 0.59 +0.6 875,178 - Psest_0800 0.60 -2.5 875,249 + Psest_0800 0.69 -0.2 875,465 + -1.5 875,465 + +0.2 875,465 + +0.1 875,465 + -0.5 875,465 + -1.8 875,465 + +1.1 875,466 - -0.3 875,466 - -0.0 875,466 - +1.7 875,466 - -0.3 875,466 - +0.0 875,466 - -2.1 875,466 - -1.3 875,598 + -2.6 875,599 - +0.3
Or see this region's nucleotide sequence