Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0670

Experiment: Paraquat dichloride 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0669 and Psest_0670 are separated by 14 nucleotidesPsest_0670 and Psest_0671 are separated by 196 nucleotides Psest_0669: Psest_0669 - Ethanolamine ammonia-lyase, large subunit, at 728,770 to 730,161 _0669 Psest_0670: Psest_0670 - ethanolamine permease, at 730,176 to 731,624 _0670 Psest_0671: Psest_0671 - NAD-dependent aldehyde dehydrogenases, at 731,821 to 733,341 _0671 Position (kb) 730 731 732Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 729.206 kb on + strand, within Psest_0669at 729.206 kb on + strand, within Psest_0669at 729.206 kb on + strand, within Psest_0669at 729.206 kb on + strand, within Psest_0669at 729.207 kb on - strand, within Psest_0669at 729.207 kb on - strand, within Psest_0669at 729.207 kb on - strand, within Psest_0669at 729.224 kb on + strand, within Psest_0669at 729.305 kb on + strand, within Psest_0669at 729.305 kb on + strand, within Psest_0669at 729.306 kb on - strand, within Psest_0669at 729.357 kb on - strand, within Psest_0669at 729.357 kb on - strand, within Psest_0669at 730.255 kb on + strandat 730.255 kb on + strandat 730.255 kb on + strandat 730.255 kb on + strandat 730.256 kb on - strandat 730.256 kb on - strandat 730.256 kb on - strandat 730.267 kb on + strandat 730.268 kb on - strandat 730.285 kb on + strandat 730.285 kb on + strandat 730.285 kb on + strandat 730.285 kb on + strandat 730.286 kb on - strandat 730.286 kb on - strandat 730.286 kb on - strandat 730.286 kb on - strandat 730.286 kb on - strandat 730.399 kb on + strand, within Psest_0670at 730.462 kb on + strand, within Psest_0670at 730.462 kb on + strand, within Psest_0670at 730.462 kb on + strand, within Psest_0670at 730.463 kb on - strand, within Psest_0670at 730.463 kb on - strand, within Psest_0670at 730.463 kb on - strand, within Psest_0670at 730.463 kb on - strand, within Psest_0670at 730.463 kb on - strand, within Psest_0670at 730.651 kb on + strand, within Psest_0670at 730.651 kb on + strand, within Psest_0670at 730.651 kb on + strand, within Psest_0670at 730.651 kb on + strand, within Psest_0670at 730.651 kb on + strand, within Psest_0670at 730.651 kb on + strand, within Psest_0670at 730.651 kb on + strand, within Psest_0670at 730.652 kb on - strand, within Psest_0670at 730.652 kb on - strand, within Psest_0670at 730.652 kb on - strand, within Psest_0670at 730.652 kb on - strand, within Psest_0670at 730.652 kb on - strand, within Psest_0670at 730.839 kb on + strand, within Psest_0670at 730.972 kb on + strand, within Psest_0670at 730.978 kb on + strand, within Psest_0670at 731.141 kb on + strand, within Psest_0670at 731.142 kb on - strand, within Psest_0670at 731.142 kb on - strand, within Psest_0670at 731.142 kb on - strand, within Psest_0670at 731.164 kb on + strand, within Psest_0670at 731.164 kb on + strand, within Psest_0670at 731.164 kb on + strand, within Psest_0670at 731.164 kb on + strand, within Psest_0670at 731.164 kb on + strand, within Psest_0670at 731.164 kb on + strand, within Psest_0670at 731.164 kb on + strand, within Psest_0670at 731.165 kb on - strand, within Psest_0670at 731.165 kb on - strand, within Psest_0670at 731.165 kb on - strand, within Psest_0670at 731.165 kb on - strand, within Psest_0670at 731.165 kb on - strand, within Psest_0670at 731.165 kb on - strand, within Psest_0670at 731.165 kb on - strand, within Psest_0670at 731.165 kb on - strand, within Psest_0670at 731.165 kb on - strand, within Psest_0670at 731.165 kb on - strand, within Psest_0670at 731.165 kb on - strand, within Psest_0670at 731.165 kb on - strand, within Psest_0670at 731.165 kb on - strand, within Psest_0670at 731.176 kb on + strand, within Psest_0670at 731.176 kb on + strand, within Psest_0670at 731.176 kb on + strand, within Psest_0670at 731.176 kb on + strand, within Psest_0670at 731.176 kb on + strand, within Psest_0670at 731.176 kb on + strand, within Psest_0670at 731.176 kb on + strand, within Psest_0670at 731.176 kb on + strand, within Psest_0670at 731.176 kb on + strand, within Psest_0670at 731.176 kb on + strand, within Psest_0670at 731.177 kb on - strand, within Psest_0670at 731.177 kb on - strand, within Psest_0670at 731.177 kb on - strand, within Psest_0670at 731.177 kb on - strand, within Psest_0670at 731.215 kb on + strand, within Psest_0670at 731.230 kb on - strand, within Psest_0670at 731.257 kb on + strand, within Psest_0670at 731.258 kb on - strand, within Psest_0670at 731.389 kb on + strand, within Psest_0670at 731.389 kb on + strand, within Psest_0670at 731.389 kb on + strand, within Psest_0670at 731.389 kb on + strand, within Psest_0670at 731.389 kb on + strand, within Psest_0670at 731.389 kb on + strand, within Psest_0670at 731.389 kb on + strand, within Psest_0670at 731.389 kb on + strand, within Psest_0670at 731.390 kb on - strand, within Psest_0670at 731.390 kb on - strand, within Psest_0670at 731.390 kb on - strand, within Psest_0670at 731.390 kb on - strand, within Psest_0670at 731.390 kb on - strand, within Psest_0670at 731.390 kb on - strand, within Psest_0670at 731.390 kb on - strand, within Psest_0670at 731.468 kb on - strand, within Psest_0670at 731.485 kb on + strandat 731.485 kb on + strandat 731.485 kb on + strandat 731.486 kb on - strandat 731.486 kb on - strandat 731.486 kb on - strandat 731.486 kb on - strandat 731.486 kb on - strandat 731.486 kb on - strandat 731.555 kb on - strandat 731.555 kb on - strandat 731.555 kb on - strandat 731.555 kb on - strandat 731.558 kb on + strandat 731.558 kb on + strandat 731.558 kb on + strandat 731.559 kb on - strandat 731.849 kb on + strandat 731.879 kb on + strandat 731.930 kb on + strandat 731.930 kb on + strandat 731.930 kb on + strandat 731.958 kb on - strandat 731.966 kb on + strandat 732.148 kb on + strand, within Psest_0671at 732.148 kb on + strand, within Psest_0671at 732.148 kb on + strand, within Psest_0671at 732.148 kb on + strand, within Psest_0671at 732.149 kb on - strand, within Psest_0671at 732.191 kb on + strand, within Psest_0671at 732.191 kb on + strand, within Psest_0671at 732.191 kb on + strand, within Psest_0671at 732.191 kb on + strand, within Psest_0671at 732.191 kb on + strand, within Psest_0671at 732.191 kb on + strand, within Psest_0671at 732.191 kb on + strand, within Psest_0671at 732.191 kb on + strand, within Psest_0671at 732.191 kb on + strand, within Psest_0671at 732.191 kb on + strand, within Psest_0671at 732.191 kb on + strand, within Psest_0671at 732.191 kb on + strand, within Psest_0671at 732.191 kb on + strand, within Psest_0671at 732.191 kb on + strand, within Psest_0671at 732.192 kb on - strand, within Psest_0671at 732.192 kb on - strand, within Psest_0671at 732.192 kb on - strand, within Psest_0671at 732.192 kb on - strand, within Psest_0671at 732.192 kb on - strand, within Psest_0671at 732.192 kb on - strand, within Psest_0671at 732.192 kb on - strand, within Psest_0671at 732.192 kb on - strand, within Psest_0671at 732.192 kb on - strand, within Psest_0671at 732.192 kb on - strand, within Psest_0671at 732.192 kb on - strand, within Psest_0671at 732.192 kb on - strand, within Psest_0671at 732.192 kb on - strand, within Psest_0671at 732.278 kb on + strand, within Psest_0671at 732.278 kb on + strand, within Psest_0671at 732.278 kb on + strand, within Psest_0671at 732.401 kb on + strand, within Psest_0671at 732.401 kb on + strand, within Psest_0671at 732.401 kb on + strand, within Psest_0671at 732.401 kb on + strand, within Psest_0671at 732.401 kb on + strand, within Psest_0671at 732.401 kb on + strand, within Psest_0671at 732.401 kb on + strand, within Psest_0671at 732.401 kb on + strand, within Psest_0671at 732.401 kb on + strand, within Psest_0671at 732.401 kb on + strand, within Psest_0671at 732.401 kb on + strand, within Psest_0671at 732.401 kb on + strand, within Psest_0671at 732.401 kb on + strand, within Psest_0671at 732.401 kb on + strand, within Psest_0671at 732.402 kb on - strand, within Psest_0671at 732.402 kb on - strand, within Psest_0671at 732.402 kb on - strand, within Psest_0671at 732.402 kb on - strand, within Psest_0671at 732.402 kb on - strand, within Psest_0671at 732.402 kb on - strand, within Psest_0671at 732.402 kb on - strand, within Psest_0671at 732.402 kb on - strand, within Psest_0671at 732.402 kb on - strand, within Psest_0671at 732.402 kb on - strand, within Psest_0671at 732.402 kb on - strand, within Psest_0671at 732.402 kb on - strand, within Psest_0671at 732.530 kb on + strand, within Psest_0671at 732.530 kb on + strand, within Psest_0671at 732.530 kb on + strand, within Psest_0671at 732.531 kb on - strand, within Psest_0671at 732.531 kb on - strand, within Psest_0671

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.015 mg/ml
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729,206 + Psest_0669 0.31 -2.0
729,206 + Psest_0669 0.31 +0.3
729,206 + Psest_0669 0.31 +1.1
729,206 + Psest_0669 0.31 +0.6
729,207 - Psest_0669 0.31 -1.0
729,207 - Psest_0669 0.31 -1.4
729,207 - Psest_0669 0.31 -0.1
729,224 + Psest_0669 0.33 -1.2
729,305 + Psest_0669 0.38 -0.7
729,305 + Psest_0669 0.38 -0.3
729,306 - Psest_0669 0.39 +1.6
729,357 - Psest_0669 0.42 +0.0
729,357 - Psest_0669 0.42 -0.2
730,255 + -0.7
730,255 + +0.1
730,255 + +2.4
730,255 + +0.8
730,256 - -0.3
730,256 - -1.9
730,256 - +0.4
730,267 + +1.0
730,268 - +1.3
730,285 + +0.7
730,285 + -2.2
730,285 + -1.1
730,285 + +0.2
730,286 - -1.0
730,286 - -0.7
730,286 - +0.3
730,286 - +2.8
730,286 - -1.1
730,399 + Psest_0670 0.15 +0.6
730,462 + Psest_0670 0.20 -0.6
730,462 + Psest_0670 0.20 -2.1
730,462 + Psest_0670 0.20 +1.3
730,463 - Psest_0670 0.20 -0.5
730,463 - Psest_0670 0.20 -2.2
730,463 - Psest_0670 0.20 -0.2
730,463 - Psest_0670 0.20 +2.5
730,463 - Psest_0670 0.20 -0.4
730,651 + Psest_0670 0.33 -0.3
730,651 + Psest_0670 0.33 +0.0
730,651 + Psest_0670 0.33 -0.4
730,651 + Psest_0670 0.33 +0.4
730,651 + Psest_0670 0.33 -0.9
730,651 + Psest_0670 0.33 +0.3
730,651 + Psest_0670 0.33 -0.5
730,652 - Psest_0670 0.33 +0.1
730,652 - Psest_0670 0.33 +0.9
730,652 - Psest_0670 0.33 -1.2
730,652 - Psest_0670 0.33 -2.5
730,652 - Psest_0670 0.33 +2.1
730,839 + Psest_0670 0.46 -0.6
730,972 + Psest_0670 0.55 -0.1
730,978 + Psest_0670 0.55 +2.4
731,141 + Psest_0670 0.67 +0.1
731,142 - Psest_0670 0.67 +0.4
731,142 - Psest_0670 0.67 -0.1
731,142 - Psest_0670 0.67 -0.2
731,164 + Psest_0670 0.68 -0.2
731,164 + Psest_0670 0.68 +0.4
731,164 + Psest_0670 0.68 +2.0
731,164 + Psest_0670 0.68 -0.5
731,164 + Psest_0670 0.68 -1.7
731,164 + Psest_0670 0.68 -1.7
731,164 + Psest_0670 0.68 +0.5
731,165 - Psest_0670 0.68 +0.1
731,165 - Psest_0670 0.68 +1.3
731,165 - Psest_0670 0.68 -1.0
731,165 - Psest_0670 0.68 -3.6
731,165 - Psest_0670 0.68 -1.5
731,165 - Psest_0670 0.68 +0.6
731,165 - Psest_0670 0.68 -1.9
731,165 - Psest_0670 0.68 -0.1
731,165 - Psest_0670 0.68 -2.3
731,165 - Psest_0670 0.68 -0.5
731,165 - Psest_0670 0.68 -2.3
731,165 - Psest_0670 0.68 +0.6
731,165 - Psest_0670 0.68 +2.9
731,176 + Psest_0670 0.69 -1.5
731,176 + Psest_0670 0.69 -1.1
731,176 + Psest_0670 0.69 +2.6
731,176 + Psest_0670 0.69 +0.3
731,176 + Psest_0670 0.69 -0.1
731,176 + Psest_0670 0.69 +0.1
731,176 + Psest_0670 0.69 +0.0
731,176 + Psest_0670 0.69 +1.4
731,176 + Psest_0670 0.69 +2.4
731,176 + Psest_0670 0.69 -0.6
731,177 - Psest_0670 0.69 -0.6
731,177 - Psest_0670 0.69 -0.7
731,177 - Psest_0670 0.69 -2.5
731,177 - Psest_0670 0.69 +2.5
731,215 + Psest_0670 0.72 +0.4
731,230 - Psest_0670 0.73 -2.6
731,257 + Psest_0670 0.75 -1.7
731,258 - Psest_0670 0.75 -2.6
731,389 + Psest_0670 0.84 -1.0
731,389 + Psest_0670 0.84 -2.0
731,389 + Psest_0670 0.84 -2.0
731,389 + Psest_0670 0.84 -1.5
731,389 + Psest_0670 0.84 +0.8
731,389 + Psest_0670 0.84 -1.5
731,389 + Psest_0670 0.84 -0.5
731,389 + Psest_0670 0.84 -0.5
731,390 - Psest_0670 0.84 +0.9
731,390 - Psest_0670 0.84 -1.0
731,390 - Psest_0670 0.84 -0.4
731,390 - Psest_0670 0.84 +0.4
731,390 - Psest_0670 0.84 -0.5
731,390 - Psest_0670 0.84 -1.6
731,390 - Psest_0670 0.84 -1.1
731,468 - Psest_0670 0.89 -1.6
731,485 + +1.9
731,485 + -1.0
731,485 + +1.7
731,486 - -0.6
731,486 - -1.3
731,486 - +1.0
731,486 - -0.6
731,486 - +0.7
731,486 - -1.8
731,555 - -2.7
731,555 - -0.7
731,555 - +1.3
731,555 - +0.5
731,558 + -1.6
731,558 + -1.9
731,558 + +1.1
731,559 - -0.6
731,849 + -1.0
731,879 + +0.2
731,930 + -0.6
731,930 + +0.4
731,930 + -0.7
731,958 - -0.4
731,966 + +0.1
732,148 + Psest_0671 0.21 +1.7
732,148 + Psest_0671 0.21 +1.0
732,148 + Psest_0671 0.21 -3.0
732,148 + Psest_0671 0.21 -2.3
732,149 - Psest_0671 0.22 -0.5
732,191 + Psest_0671 0.24 +0.1
732,191 + Psest_0671 0.24 -1.3
732,191 + Psest_0671 0.24 -0.5
732,191 + Psest_0671 0.24 +2.6
732,191 + Psest_0671 0.24 +0.5
732,191 + Psest_0671 0.24 +0.8
732,191 + Psest_0671 0.24 +0.0
732,191 + Psest_0671 0.24 -1.0
732,191 + Psest_0671 0.24 -1.3
732,191 + Psest_0671 0.24 -1.5
732,191 + Psest_0671 0.24 +0.6
732,191 + Psest_0671 0.24 -1.6
732,191 + Psest_0671 0.24 +0.6
732,191 + Psest_0671 0.24 +2.1
732,192 - Psest_0671 0.24 +1.1
732,192 - Psest_0671 0.24 -0.1
732,192 - Psest_0671 0.24 -0.9
732,192 - Psest_0671 0.24 -1.3
732,192 - Psest_0671 0.24 +0.0
732,192 - Psest_0671 0.24 -1.1
732,192 - Psest_0671 0.24 -0.9
732,192 - Psest_0671 0.24 +1.0
732,192 - Psest_0671 0.24 -0.6
732,192 - Psest_0671 0.24 +0.2
732,192 - Psest_0671 0.24 -0.7
732,192 - Psest_0671 0.24 -1.2
732,192 - Psest_0671 0.24 +0.2
732,278 + Psest_0671 0.30 +1.5
732,278 + Psest_0671 0.30 -1.8
732,278 + Psest_0671 0.30 +0.3
732,401 + Psest_0671 0.38 +0.7
732,401 + Psest_0671 0.38 -0.9
732,401 + Psest_0671 0.38 -2.1
732,401 + Psest_0671 0.38 -1.6
732,401 + Psest_0671 0.38 +1.5
732,401 + Psest_0671 0.38 +0.6
732,401 + Psest_0671 0.38 +0.5
732,401 + Psest_0671 0.38 +1.0
732,401 + Psest_0671 0.38 -1.5
732,401 + Psest_0671 0.38 -0.2
732,401 + Psest_0671 0.38 -0.8
732,401 + Psest_0671 0.38 +2.7
732,401 + Psest_0671 0.38 -0.7
732,401 + Psest_0671 0.38 +0.9
732,402 - Psest_0671 0.38 -1.2
732,402 - Psest_0671 0.38 -1.9
732,402 - Psest_0671 0.38 -2.4
732,402 - Psest_0671 0.38 -0.7
732,402 - Psest_0671 0.38 -1.8
732,402 - Psest_0671 0.38 -1.3
732,402 - Psest_0671 0.38 -1.6
732,402 - Psest_0671 0.38 -1.5
732,402 - Psest_0671 0.38 +0.8
732,402 - Psest_0671 0.38 -0.7
732,402 - Psest_0671 0.38 -1.0
732,402 - Psest_0671 0.38 +1.2
732,530 + Psest_0671 0.47 -2.3
732,530 + Psest_0671 0.47 -1.5
732,530 + Psest_0671 0.47 -1.3
732,531 - Psest_0671 0.47 +1.3
732,531 - Psest_0671 0.47 -1.1

Or see this region's nucleotide sequence