Experiment: Paraquat dichloride 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3735 and Psest_3736 are separated by 4 nucleotides Psest_3736 and Psest_3737 are separated by 14 nucleotides Psest_3737 and Psest_3739 are separated by 312 nucleotides Psest_3739 and Psest_3740 overlap by 4 nucleotides
Psest_3735: Psest_3735 - uncharacterized domain 1, at 3,908,518 to 3,908,985
_3735
Psest_3736: Psest_3736 - Uncharacterized protein conserved in bacteria, at 3,908,990 to 3,909,445
_3736
Psest_3737: Psest_3737 - Putative threonine efflux protein, at 3,909,460 to 3,910,092
_3737
Psest_3739: Psest_3739 - Small-conductance mechanosensitive channel, at 3,910,405 to 3,910,986
_3739
Psest_3740: Psest_3740 - ATPase components of ABC transporters with duplicated ATPase domains, at 3,910,983 to 3,912,893
_3740
Position (kb)
3909
3910
3911 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3908.839 kb on + strand, within Psest_3735 at 3908.840 kb on - strand, within Psest_3735 at 3908.958 kb on - strand at 3908.971 kb on + strand at 3908.971 kb on + strand at 3908.971 kb on + strand at 3908.972 kb on - strand at 3908.972 kb on - strand at 3908.972 kb on - strand at 3908.972 kb on - strand at 3908.972 kb on - strand at 3908.972 kb on - strand at 3908.972 kb on - strand at 3908.972 kb on - strand at 3909.305 kb on + strand, within Psest_3736 at 3909.306 kb on - strand, within Psest_3736 at 3909.306 kb on - strand, within Psest_3736 at 3909.464 kb on - strand at 3909.464 kb on - strand at 3909.593 kb on + strand, within Psest_3737 at 3909.593 kb on + strand, within Psest_3737 at 3909.593 kb on + strand, within Psest_3737 at 3909.594 kb on - strand, within Psest_3737 at 3909.594 kb on - strand, within Psest_3737 at 3909.594 kb on - strand, within Psest_3737 at 3909.594 kb on - strand, within Psest_3737 at 3909.594 kb on - strand, within Psest_3737 at 3909.594 kb on - strand, within Psest_3737 at 3909.647 kb on + strand, within Psest_3737 at 3909.648 kb on - strand, within Psest_3737 at 3909.648 kb on - strand, within Psest_3737 at 3909.974 kb on + strand, within Psest_3737 at 3910.251 kb on + strand at 3910.257 kb on + strand at 3910.258 kb on - strand at 3910.258 kb on - strand at 3910.302 kb on + strand at 3910.407 kb on - strand at 3910.427 kb on + strand at 3910.427 kb on + strand at 3910.894 kb on + strand, within Psest_3739 at 3910.894 kb on + strand, within Psest_3739 at 3910.894 kb on + strand, within Psest_3739 at 3910.894 kb on + strand, within Psest_3739 at 3910.894 kb on + strand, within Psest_3739 at 3910.894 kb on + strand, within Psest_3739 at 3910.898 kb on + strand, within Psest_3739 at 3910.898 kb on + strand, within Psest_3739 at 3910.898 kb on + strand, within Psest_3739 at 3910.898 kb on + strand, within Psest_3739 at 3910.898 kb on + strand, within Psest_3739 at 3910.898 kb on + strand, within Psest_3739 at 3910.899 kb on - strand, within Psest_3739 at 3910.899 kb on - strand, within Psest_3739
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.015 mg/ml remove 3,908,839 + Psest_3735 0.69 +0.1 3,908,840 - Psest_3735 0.69 -3.3 3,908,958 - +1.4 3,908,971 + -1.3 3,908,971 + +0.0 3,908,971 + -1.0 3,908,972 - +0.6 3,908,972 - +0.1 3,908,972 - -0.3 3,908,972 - +1.2 3,908,972 - -0.5 3,908,972 - +0.1 3,908,972 - -1.2 3,908,972 - -2.8 3,909,305 + Psest_3736 0.69 -1.1 3,909,306 - Psest_3736 0.69 +1.4 3,909,306 - Psest_3736 0.69 +2.0 3,909,464 - -3.4 3,909,464 - -1.2 3,909,593 + Psest_3737 0.21 +1.8 3,909,593 + Psest_3737 0.21 -1.0 3,909,593 + Psest_3737 0.21 -0.4 3,909,594 - Psest_3737 0.21 +2.0 3,909,594 - Psest_3737 0.21 -2.4 3,909,594 - Psest_3737 0.21 -0.4 3,909,594 - Psest_3737 0.21 -1.0 3,909,594 - Psest_3737 0.21 +0.5 3,909,594 - Psest_3737 0.21 +3.9 3,909,647 + Psest_3737 0.30 +0.2 3,909,648 - Psest_3737 0.30 -0.1 3,909,648 - Psest_3737 0.30 -1.9 3,909,974 + Psest_3737 0.81 +1.4 3,910,251 + -0.8 3,910,257 + -0.8 3,910,258 - -2.4 3,910,258 - +3.8 3,910,302 + +3.1 3,910,407 - +1.1 3,910,427 + +1.3 3,910,427 + -0.7 3,910,894 + Psest_3739 0.84 -2.5 3,910,894 + Psest_3739 0.84 +0.9 3,910,894 + Psest_3739 0.84 +0.2 3,910,894 + Psest_3739 0.84 -0.4 3,910,894 + Psest_3739 0.84 -1.1 3,910,894 + Psest_3739 0.84 -3.7 3,910,898 + Psest_3739 0.85 -0.8 3,910,898 + Psest_3739 0.85 +0.8 3,910,898 + Psest_3739 0.85 -2.2 3,910,898 + Psest_3739 0.85 +0.3 3,910,898 + Psest_3739 0.85 +0.5 3,910,898 + Psest_3739 0.85 -2.0 3,910,899 - Psest_3739 0.85 +0.5 3,910,899 - Psest_3739 0.85 +0.6
Or see this region's nucleotide sequence