Experiment: Paraquat dichloride 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3578 and Psest_3579 are separated by 194 nucleotides Psest_3579 and Psest_3580 are separated by 45 nucleotides
Psest_3578: Psest_3578 - Catalase, at 3,754,471 to 3,755,931
_3578
Psest_3579: Psest_3579 - ribosomal protein L17, at 3,756,126 to 3,756,512
_3579
Psest_3580: Psest_3580 - DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type, at 3,756,558 to 3,757,559
_3580
Position (kb)
3756
3757 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3755.143 kb on + strand, within Psest_3578 at 3755.143 kb on + strand, within Psest_3578 at 3755.153 kb on + strand, within Psest_3578 at 3755.153 kb on + strand, within Psest_3578 at 3755.153 kb on + strand, within Psest_3578 at 3755.153 kb on + strand, within Psest_3578 at 3755.153 kb on + strand, within Psest_3578 at 3755.153 kb on + strand, within Psest_3578 at 3755.153 kb on + strand, within Psest_3578 at 3755.153 kb on + strand, within Psest_3578 at 3755.153 kb on + strand, within Psest_3578 at 3755.153 kb on + strand, within Psest_3578 at 3755.153 kb on + strand, within Psest_3578 at 3755.153 kb on + strand, within Psest_3578 at 3755.153 kb on + strand, within Psest_3578 at 3755.153 kb on + strand, within Psest_3578 at 3755.153 kb on + strand, within Psest_3578 at 3755.153 kb on + strand, within Psest_3578 at 3755.153 kb on + strand, within Psest_3578 at 3755.154 kb on - strand, within Psest_3578 at 3755.154 kb on - strand, within Psest_3578 at 3755.154 kb on - strand, within Psest_3578 at 3755.154 kb on - strand, within Psest_3578 at 3755.154 kb on - strand, within Psest_3578 at 3755.154 kb on - strand, within Psest_3578 at 3755.154 kb on - strand, within Psest_3578 at 3755.154 kb on - strand, within Psest_3578 at 3755.154 kb on - strand, within Psest_3578 at 3755.154 kb on - strand, within Psest_3578 at 3755.154 kb on - strand, within Psest_3578 at 3755.154 kb on - strand, within Psest_3578 at 3755.154 kb on - strand, within Psest_3578 at 3755.154 kb on - strand, within Psest_3578 at 3755.154 kb on - strand, within Psest_3578 at 3755.154 kb on - strand, within Psest_3578 at 3755.154 kb on - strand, within Psest_3578 at 3755.154 kb on - strand, within Psest_3578 at 3755.154 kb on - strand, within Psest_3578 at 3755.154 kb on - strand, within Psest_3578 at 3755.154 kb on - strand, within Psest_3578 at 3755.154 kb on - strand, within Psest_3578 at 3755.154 kb on - strand, within Psest_3578 at 3755.154 kb on - strand, within Psest_3578 at 3755.154 kb on - strand, within Psest_3578 at 3755.197 kb on + strand, within Psest_3578 at 3755.198 kb on - strand, within Psest_3578 at 3755.198 kb on - strand, within Psest_3578 at 3755.198 kb on - strand, within Psest_3578 at 3755.198 kb on - strand, within Psest_3578 at 3755.198 kb on - strand, within Psest_3578 at 3755.333 kb on + strand, within Psest_3578 at 3755.333 kb on + strand, within Psest_3578 at 3755.333 kb on + strand, within Psest_3578 at 3755.333 kb on + strand, within Psest_3578 at 3755.333 kb on + strand, within Psest_3578 at 3755.333 kb on + strand, within Psest_3578 at 3755.334 kb on - strand, within Psest_3578 at 3755.334 kb on - strand, within Psest_3578 at 3755.334 kb on - strand, within Psest_3578 at 3755.334 kb on - strand, within Psest_3578 at 3755.334 kb on - strand, within Psest_3578 at 3755.334 kb on - strand, within Psest_3578 at 3755.334 kb on - strand, within Psest_3578 at 3755.359 kb on - strand, within Psest_3578 at 3755.359 kb on - strand, within Psest_3578 at 3755.359 kb on - strand, within Psest_3578 at 3755.359 kb on - strand, within Psest_3578 at 3755.359 kb on - strand, within Psest_3578 at 3755.359 kb on - strand, within Psest_3578 at 3755.366 kb on + strand, within Psest_3578 at 3755.399 kb on + strand, within Psest_3578 at 3755.399 kb on + strand, within Psest_3578 at 3755.399 kb on + strand, within Psest_3578 at 3755.399 kb on + strand, within Psest_3578 at 3755.399 kb on + strand, within Psest_3578 at 3755.399 kb on + strand, within Psest_3578 at 3755.399 kb on + strand, within Psest_3578 at 3755.399 kb on + strand, within Psest_3578 at 3755.399 kb on + strand, within Psest_3578 at 3755.400 kb on - strand, within Psest_3578 at 3755.400 kb on - strand, within Psest_3578 at 3755.400 kb on - strand, within Psest_3578 at 3755.400 kb on - strand, within Psest_3578 at 3755.400 kb on - strand, within Psest_3578 at 3755.400 kb on - strand, within Psest_3578 at 3755.400 kb on - strand, within Psest_3578 at 3755.400 kb on - strand, within Psest_3578 at 3755.400 kb on - strand, within Psest_3578 at 3755.548 kb on - strand, within Psest_3578 at 3755.582 kb on + strand, within Psest_3578 at 3755.827 kb on + strand at 3755.827 kb on + strand at 3755.828 kb on - strand at 3755.828 kb on - strand at 3755.973 kb on + strand at 3755.973 kb on + strand at 3755.974 kb on - strand at 3755.977 kb on + strand at 3756.001 kb on - strand at 3756.047 kb on - strand at 3756.048 kb on + strand at 3756.048 kb on + strand at 3756.048 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.015 mg/ml remove 3,755,143 + Psest_3578 0.46 +1.0 3,755,143 + Psest_3578 0.46 -2.0 3,755,153 + Psest_3578 0.47 -2.2 3,755,153 + Psest_3578 0.47 -1.4 3,755,153 + Psest_3578 0.47 -0.5 3,755,153 + Psest_3578 0.47 -0.7 3,755,153 + Psest_3578 0.47 -1.4 3,755,153 + Psest_3578 0.47 -0.4 3,755,153 + Psest_3578 0.47 -1.4 3,755,153 + Psest_3578 0.47 -1.0 3,755,153 + Psest_3578 0.47 -1.5 3,755,153 + Psest_3578 0.47 +1.1 3,755,153 + Psest_3578 0.47 +0.1 3,755,153 + Psest_3578 0.47 +2.0 3,755,153 + Psest_3578 0.47 -0.5 3,755,153 + Psest_3578 0.47 -0.8 3,755,153 + Psest_3578 0.47 -1.2 3,755,153 + Psest_3578 0.47 -2.8 3,755,153 + Psest_3578 0.47 -3.2 3,755,154 - Psest_3578 0.47 -0.3 3,755,154 - Psest_3578 0.47 -2.3 3,755,154 - Psest_3578 0.47 -2.8 3,755,154 - Psest_3578 0.47 +0.6 3,755,154 - Psest_3578 0.47 -2.9 3,755,154 - Psest_3578 0.47 -0.6 3,755,154 - Psest_3578 0.47 -0.5 3,755,154 - Psest_3578 0.47 -1.8 3,755,154 - Psest_3578 0.47 +1.1 3,755,154 - Psest_3578 0.47 -0.8 3,755,154 - Psest_3578 0.47 -2.3 3,755,154 - Psest_3578 0.47 +0.2 3,755,154 - Psest_3578 0.47 -1.7 3,755,154 - Psest_3578 0.47 +1.3 3,755,154 - Psest_3578 0.47 -0.4 3,755,154 - Psest_3578 0.47 +1.5 3,755,154 - Psest_3578 0.47 -1.2 3,755,154 - Psest_3578 0.47 +0.8 3,755,154 - Psest_3578 0.47 -0.2 3,755,154 - Psest_3578 0.47 -3.0 3,755,154 - Psest_3578 0.47 +0.6 3,755,154 - Psest_3578 0.47 -3.2 3,755,154 - Psest_3578 0.47 +0.7 3,755,154 - Psest_3578 0.47 +0.5 3,755,154 - Psest_3578 0.47 -1.4 3,755,197 + Psest_3578 0.50 +0.2 3,755,198 - Psest_3578 0.50 -0.7 3,755,198 - Psest_3578 0.50 -1.7 3,755,198 - Psest_3578 0.50 -1.4 3,755,198 - Psest_3578 0.50 -1.0 3,755,198 - Psest_3578 0.50 -0.2 3,755,333 + Psest_3578 0.59 -1.4 3,755,333 + Psest_3578 0.59 -0.8 3,755,333 + Psest_3578 0.59 -1.2 3,755,333 + Psest_3578 0.59 -2.8 3,755,333 + Psest_3578 0.59 -0.2 3,755,333 + Psest_3578 0.59 -1.5 3,755,334 - Psest_3578 0.59 -0.2 3,755,334 - Psest_3578 0.59 -1.3 3,755,334 - Psest_3578 0.59 -0.1 3,755,334 - Psest_3578 0.59 +0.2 3,755,334 - Psest_3578 0.59 -1.5 3,755,334 - Psest_3578 0.59 -2.5 3,755,334 - Psest_3578 0.59 -2.5 3,755,359 - Psest_3578 0.61 -0.5 3,755,359 - Psest_3578 0.61 +1.0 3,755,359 - Psest_3578 0.61 -1.7 3,755,359 - Psest_3578 0.61 -3.3 3,755,359 - Psest_3578 0.61 -3.6 3,755,359 - Psest_3578 0.61 -2.0 3,755,366 + Psest_3578 0.61 +0.6 3,755,399 + Psest_3578 0.64 -0.5 3,755,399 + Psest_3578 0.64 -2.7 3,755,399 + Psest_3578 0.64 -1.1 3,755,399 + Psest_3578 0.64 +1.8 3,755,399 + Psest_3578 0.64 -0.8 3,755,399 + Psest_3578 0.64 -1.2 3,755,399 + Psest_3578 0.64 -3.1 3,755,399 + Psest_3578 0.64 -0.5 3,755,399 + Psest_3578 0.64 -1.5 3,755,400 - Psest_3578 0.64 +0.2 3,755,400 - Psest_3578 0.64 -1.9 3,755,400 - Psest_3578 0.64 -1.5 3,755,400 - Psest_3578 0.64 -0.8 3,755,400 - Psest_3578 0.64 -0.2 3,755,400 - Psest_3578 0.64 -0.4 3,755,400 - Psest_3578 0.64 -1.0 3,755,400 - Psest_3578 0.64 -0.8 3,755,400 - Psest_3578 0.64 +0.7 3,755,548 - Psest_3578 0.74 -2.2 3,755,582 + Psest_3578 0.76 +0.3 3,755,827 + -1.0 3,755,827 + +0.0 3,755,828 - +0.0 3,755,828 - -1.3 3,755,973 + -2.5 3,755,973 + -2.5 3,755,974 - +3.3 3,755,977 + -0.7 3,756,001 - +2.2 3,756,047 - -0.3 3,756,048 + +3.0 3,756,048 + -0.6 3,756,048 + +3.4
Or see this region's nucleotide sequence