Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0305

Experiment: Paraquat dichloride 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0303 and Psest_0304 overlap by 4 nucleotidesPsest_0304 and Psest_0305 are separated by 24 nucleotidesPsest_0305 and Psest_0306 are separated by 90 nucleotides Psest_0303: Psest_0303 - Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain, at 323,006 to 324,058 _0303 Psest_0304: Psest_0304 - Chemotaxis signal transduction protein, at 324,055 to 324,525 _0304 Psest_0305: Psest_0305 - RNA methyltransferase, RsmE family, at 324,550 to 325,266 _0305 Psest_0306: Psest_0306 - adenosylmethionine-8-amino-7-oxononanoate transaminase, at 325,357 to 326,760 _0306 Position (kb) 324 325 326Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 323.552 kb on + strand, within Psest_0303at 323.552 kb on + strand, within Psest_0303at 323.552 kb on + strand, within Psest_0303at 323.552 kb on + strand, within Psest_0303at 323.552 kb on + strand, within Psest_0303at 323.552 kb on + strand, within Psest_0303at 323.552 kb on + strand, within Psest_0303at 323.552 kb on + strand, within Psest_0303at 323.751 kb on - strand, within Psest_0303at 323.751 kb on - strand, within Psest_0303at 323.751 kb on - strand, within Psest_0303at 323.861 kb on + strand, within Psest_0303at 323.861 kb on + strand, within Psest_0303at 323.861 kb on + strand, within Psest_0303at 323.861 kb on + strand, within Psest_0303at 323.861 kb on + strand, within Psest_0303at 323.862 kb on - strand, within Psest_0303at 323.862 kb on - strand, within Psest_0303at 323.862 kb on - strand, within Psest_0303at 323.862 kb on - strand, within Psest_0303at 323.862 kb on - strand, within Psest_0303at 323.862 kb on - strand, within Psest_0303at 323.862 kb on - strand, within Psest_0303at 323.862 kb on - strand, within Psest_0303at 323.862 kb on - strand, within Psest_0303at 323.862 kb on - strand, within Psest_0303at 323.960 kb on + strandat 323.960 kb on + strandat 323.960 kb on + strandat 323.960 kb on + strandat 323.961 kb on - strandat 323.961 kb on - strandat 323.961 kb on - strandat 323.961 kb on - strandat 323.961 kb on - strandat 324.049 kb on + strandat 324.050 kb on - strandat 325.053 kb on + strand, within Psest_0305at 325.053 kb on + strand, within Psest_0305at 325.053 kb on + strand, within Psest_0305at 325.053 kb on + strand, within Psest_0305at 325.054 kb on - strand, within Psest_0305at 325.054 kb on - strand, within Psest_0305at 325.054 kb on - strand, within Psest_0305at 325.054 kb on - strand, within Psest_0305at 325.190 kb on + strand, within Psest_0305at 325.190 kb on + strand, within Psest_0305at 325.190 kb on + strand, within Psest_0305at 325.190 kb on + strand, within Psest_0305at 325.191 kb on - strand, within Psest_0305at 325.191 kb on - strand, within Psest_0305at 325.275 kb on + strandat 325.276 kb on - strandat 325.276 kb on - strandat 325.276 kb on - strandat 325.303 kb on + strandat 325.331 kb on + strandat 325.331 kb on + strandat 325.344 kb on + strandat 325.344 kb on + strandat 325.345 kb on - strandat 325.345 kb on - strandat 325.419 kb on + strandat 325.484 kb on + strandat 325.499 kb on + strand, within Psest_0306at 325.499 kb on + strand, within Psest_0306at 325.499 kb on + strand, within Psest_0306at 325.500 kb on - strand, within Psest_0306at 325.500 kb on - strand, within Psest_0306at 325.553 kb on + strand, within Psest_0306at 325.554 kb on - strand, within Psest_0306at 325.796 kb on + strand, within Psest_0306at 325.796 kb on + strand, within Psest_0306at 325.796 kb on + strand, within Psest_0306at 325.796 kb on + strand, within Psest_0306at 325.797 kb on - strand, within Psest_0306at 325.797 kb on - strand, within Psest_0306at 325.797 kb on - strand, within Psest_0306at 325.797 kb on - strand, within Psest_0306at 325.841 kb on + strand, within Psest_0306at 325.841 kb on + strand, within Psest_0306at 325.842 kb on - strand, within Psest_0306at 325.853 kb on + strand, within Psest_0306at 325.854 kb on - strand, within Psest_0306at 325.854 kb on - strand, within Psest_0306at 325.854 kb on - strand, within Psest_0306at 325.854 kb on - strand, within Psest_0306at 326.018 kb on + strand, within Psest_0306at 326.063 kb on + strand, within Psest_0306at 326.063 kb on + strand, within Psest_0306at 326.063 kb on + strand, within Psest_0306at 326.063 kb on + strand, within Psest_0306at 326.063 kb on + strand, within Psest_0306at 326.063 kb on + strand, within Psest_0306at 326.063 kb on + strand, within Psest_0306at 326.064 kb on - strand, within Psest_0306at 326.064 kb on - strand, within Psest_0306at 326.064 kb on - strand, within Psest_0306at 326.064 kb on - strand, within Psest_0306at 326.064 kb on - strand, within Psest_0306at 326.064 kb on - strand, within Psest_0306at 326.064 kb on - strand, within Psest_0306at 326.255 kb on + strand, within Psest_0306at 326.255 kb on + strand, within Psest_0306at 326.255 kb on + strand, within Psest_0306at 326.255 kb on + strand, within Psest_0306at 326.255 kb on + strand, within Psest_0306at 326.255 kb on + strand, within Psest_0306at 326.255 kb on + strand, within Psest_0306at 326.255 kb on + strand, within Psest_0306at 326.256 kb on - strand, within Psest_0306at 326.256 kb on - strand, within Psest_0306at 326.256 kb on - strand, within Psest_0306at 326.256 kb on - strand, within Psest_0306at 326.256 kb on - strand, within Psest_0306at 326.256 kb on - strand, within Psest_0306at 326.256 kb on - strand, within Psest_0306at 326.256 kb on - strand, within Psest_0306

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.015 mg/ml
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323,552 + Psest_0303 0.52 -0.1
323,552 + Psest_0303 0.52 -0.8
323,552 + Psest_0303 0.52 +1.6
323,552 + Psest_0303 0.52 -1.5
323,552 + Psest_0303 0.52 +0.8
323,552 + Psest_0303 0.52 -1.5
323,552 + Psest_0303 0.52 -1.7
323,552 + Psest_0303 0.52 -0.8
323,751 - Psest_0303 0.71 +1.3
323,751 - Psest_0303 0.71 +0.8
323,751 - Psest_0303 0.71 +1.4
323,861 + Psest_0303 0.81 +0.9
323,861 + Psest_0303 0.81 -0.5
323,861 + Psest_0303 0.81 +1.0
323,861 + Psest_0303 0.81 -0.3
323,861 + Psest_0303 0.81 -1.1
323,862 - Psest_0303 0.81 +2.4
323,862 - Psest_0303 0.81 -2.6
323,862 - Psest_0303 0.81 +1.4
323,862 - Psest_0303 0.81 -1.5
323,862 - Psest_0303 0.81 +0.3
323,862 - Psest_0303 0.81 -0.9
323,862 - Psest_0303 0.81 +2.3
323,862 - Psest_0303 0.81 -1.6
323,862 - Psest_0303 0.81 +0.9
323,862 - Psest_0303 0.81 +0.1
323,960 + -0.5
323,960 + +0.0
323,960 + +0.3
323,960 + -0.9
323,961 - +0.8
323,961 - -0.2
323,961 - +0.1
323,961 - -0.6
323,961 - +0.7
324,049 + -2.5
324,050 - +0.8
325,053 + Psest_0305 0.70 +0.6
325,053 + Psest_0305 0.70 -0.3
325,053 + Psest_0305 0.70 -2.1
325,053 + Psest_0305 0.70 +2.5
325,054 - Psest_0305 0.70 -1.0
325,054 - Psest_0305 0.70 +1.0
325,054 - Psest_0305 0.70 +2.6
325,054 - Psest_0305 0.70 -1.0
325,190 + Psest_0305 0.89 -0.2
325,190 + Psest_0305 0.89 +0.6
325,190 + Psest_0305 0.89 +2.1
325,190 + Psest_0305 0.89 +1.9
325,191 - Psest_0305 0.89 +1.3
325,191 - Psest_0305 0.89 +1.4
325,275 + +0.4
325,276 - +2.2
325,276 - -0.0
325,276 - -1.2
325,303 + -0.3
325,331 + +0.2
325,331 + -0.3
325,344 + +1.1
325,344 + -1.6
325,345 - +1.1
325,345 - +1.8
325,419 + -2.0
325,484 + -3.0
325,499 + Psest_0306 0.10 -1.2
325,499 + Psest_0306 0.10 -1.9
325,499 + Psest_0306 0.10 -2.9
325,500 - Psest_0306 0.10 -2.3
325,500 - Psest_0306 0.10 -1.2
325,553 + Psest_0306 0.14 -0.7
325,554 - Psest_0306 0.14 -1.6
325,796 + Psest_0306 0.31 -1.2
325,796 + Psest_0306 0.31 -3.5
325,796 + Psest_0306 0.31 -1.2
325,796 + Psest_0306 0.31 -2.6
325,797 - Psest_0306 0.31 -3.3
325,797 - Psest_0306 0.31 -3.3
325,797 - Psest_0306 0.31 -4.9
325,797 - Psest_0306 0.31 -3.1
325,841 + Psest_0306 0.34 -1.2
325,841 + Psest_0306 0.34 -2.2
325,842 - Psest_0306 0.35 -2.1
325,853 + Psest_0306 0.35 -2.4
325,854 - Psest_0306 0.35 -1.0
325,854 - Psest_0306 0.35 -2.3
325,854 - Psest_0306 0.35 -3.1
325,854 - Psest_0306 0.35 -3.7
326,018 + Psest_0306 0.47 -2.2
326,063 + Psest_0306 0.50 -4.7
326,063 + Psest_0306 0.50 -3.1
326,063 + Psest_0306 0.50 -2.3
326,063 + Psest_0306 0.50 -1.7
326,063 + Psest_0306 0.50 -1.6
326,063 + Psest_0306 0.50 -2.5
326,063 + Psest_0306 0.50 -2.9
326,064 - Psest_0306 0.50 -3.3
326,064 - Psest_0306 0.50 -2.3
326,064 - Psest_0306 0.50 -2.6
326,064 - Psest_0306 0.50 -0.4
326,064 - Psest_0306 0.50 -1.7
326,064 - Psest_0306 0.50 -1.9
326,064 - Psest_0306 0.50 -1.6
326,255 + Psest_0306 0.64 -0.5
326,255 + Psest_0306 0.64 -1.6
326,255 + Psest_0306 0.64 -1.0
326,255 + Psest_0306 0.64 -2.9
326,255 + Psest_0306 0.64 -4.1
326,255 + Psest_0306 0.64 -0.5
326,255 + Psest_0306 0.64 -1.5
326,255 + Psest_0306 0.64 -1.3
326,256 - Psest_0306 0.64 -3.1
326,256 - Psest_0306 0.64 -2.4
326,256 - Psest_0306 0.64 -1.6
326,256 - Psest_0306 0.64 -3.0
326,256 - Psest_0306 0.64 -1.8
326,256 - Psest_0306 0.64 -3.1
326,256 - Psest_0306 0.64 -1.2
326,256 - Psest_0306 0.64 -0.5

Or see this region's nucleotide sequence