Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2665

Experiment: Paraquat dichloride 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2664 and Psest_2665 are separated by 54 nucleotidesPsest_2665 and Psest_2666 are separated by 20 nucleotides Psest_2664: Psest_2664 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 2,851,496 to 2,852,485 _2664 Psest_2665: Psest_2665 - Citrate lyase beta subunit, at 2,852,540 to 2,853,367 _2665 Psest_2666: Psest_2666 - Predicted acyl-CoA transferases/carnitine dehydratase, at 2,853,388 to 2,854,593 _2666 Position (kb) 2852 2853 2854Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2851.782 kb on + strand, within Psest_2664at 2851.782 kb on + strand, within Psest_2664at 2851.782 kb on + strandat 2851.782 kb on + strand, within Psest_2664at 2851.782 kb on + strand, within Psest_2664at 2851.782 kb on + strand, within Psest_2664at 2851.782 kb on + strand, within Psest_2664at 2851.782 kb on + strand, within Psest_2664at 2851.815 kb on + strand, within Psest_2664at 2851.815 kb on + strand, within Psest_2664at 2851.815 kb on + strand, within Psest_2664at 2851.815 kb on + strand, within Psest_2664at 2851.815 kb on + strand, within Psest_2664at 2851.815 kb on + strand, within Psest_2664at 2851.816 kb on - strand, within Psest_2664at 2851.848 kb on + strand, within Psest_2664at 2851.848 kb on + strand, within Psest_2664at 2851.848 kb on + strand, within Psest_2664at 2851.902 kb on + strand, within Psest_2664at 2852.175 kb on + strand, within Psest_2664at 2852.175 kb on + strand, within Psest_2664at 2852.175 kb on + strand, within Psest_2664at 2852.175 kb on + strand, within Psest_2664at 2852.176 kb on - strand, within Psest_2664at 2852.196 kb on + strand, within Psest_2664at 2852.476 kb on + strandat 2852.476 kb on + strandat 2852.491 kb on + strandat 2852.515 kb on + strandat 2853.703 kb on - strand, within Psest_2666at 2853.873 kb on - strand, within Psest_2666at 2853.878 kb on + strand, within Psest_2666at 2853.878 kb on + strand, within Psest_2666at 2853.879 kb on - strand, within Psest_2666at 2853.879 kb on - strand, within Psest_2666at 2853.929 kb on + strand, within Psest_2666at 2853.930 kb on - strand, within Psest_2666at 2853.935 kb on + strand, within Psest_2666at 2853.938 kb on + strand, within Psest_2666at 2853.938 kb on + strand, within Psest_2666at 2853.938 kb on + strand, within Psest_2666at 2853.939 kb on - strand, within Psest_2666at 2853.939 kb on - strand, within Psest_2666at 2853.939 kb on - strand, within Psest_2666at 2853.947 kb on + strand, within Psest_2666at 2854.047 kb on - strand, within Psest_2666at 2854.047 kb on - strand, within Psest_2666at 2854.052 kb on + strand, within Psest_2666at 2854.052 kb on + strand, within Psest_2666at 2854.052 kb on + strand, within Psest_2666at 2854.052 kb on + strand, within Psest_2666at 2854.052 kb on + strand, within Psest_2666at 2854.052 kb on + strand, within Psest_2666at 2854.052 kb on + strand, within Psest_2666at 2854.052 kb on + strand, within Psest_2666at 2854.052 kb on + strand, within Psest_2666at 2854.052 kb on + strand, within Psest_2666at 2854.052 kb on + strand, within Psest_2666at 2854.052 kb on + strand, within Psest_2666at 2854.053 kb on - strand, within Psest_2666at 2854.053 kb on - strand, within Psest_2666at 2854.164 kb on - strand, within Psest_2666at 2854.182 kb on - strand, within Psest_2666

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.015 mg/ml
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2,851,782 + Psest_2664 0.29 -0.3
2,851,782 + Psest_2664 0.29 +0.2
2,851,782 + +1.1
2,851,782 + Psest_2664 0.29 +1.4
2,851,782 + Psest_2664 0.29 +0.9
2,851,782 + Psest_2664 0.29 -1.0
2,851,782 + Psest_2664 0.29 +0.6
2,851,782 + Psest_2664 0.29 -0.1
2,851,815 + Psest_2664 0.32 -0.8
2,851,815 + Psest_2664 0.32 -0.4
2,851,815 + Psest_2664 0.32 +0.7
2,851,815 + Psest_2664 0.32 +0.6
2,851,815 + Psest_2664 0.32 -1.1
2,851,815 + Psest_2664 0.32 +1.1
2,851,816 - Psest_2664 0.32 -0.4
2,851,848 + Psest_2664 0.36 +0.1
2,851,848 + Psest_2664 0.36 -1.1
2,851,848 + Psest_2664 0.36 +2.8
2,851,902 + Psest_2664 0.41 -0.1
2,852,175 + Psest_2664 0.69 +0.1
2,852,175 + Psest_2664 0.69 +1.3
2,852,175 + Psest_2664 0.69 -1.8
2,852,175 + Psest_2664 0.69 -0.5
2,852,176 - Psest_2664 0.69 -0.0
2,852,196 + Psest_2664 0.71 -1.9
2,852,476 + -0.1
2,852,476 + -1.5
2,852,491 + -1.4
2,852,515 + -1.9
2,853,703 - Psest_2666 0.26 -1.1
2,853,873 - Psest_2666 0.40 -1.2
2,853,878 + Psest_2666 0.41 +1.0
2,853,878 + Psest_2666 0.41 +0.1
2,853,879 - Psest_2666 0.41 +0.1
2,853,879 - Psest_2666 0.41 +0.1
2,853,929 + Psest_2666 0.45 -0.5
2,853,930 - Psest_2666 0.45 -3.0
2,853,935 + Psest_2666 0.45 +2.6
2,853,938 + Psest_2666 0.46 -3.1
2,853,938 + Psest_2666 0.46 -0.6
2,853,938 + Psest_2666 0.46 +1.1
2,853,939 - Psest_2666 0.46 +0.5
2,853,939 - Psest_2666 0.46 -2.1
2,853,939 - Psest_2666 0.46 +0.1
2,853,947 + Psest_2666 0.46 -0.3
2,854,047 - Psest_2666 0.55 +1.2
2,854,047 - Psest_2666 0.55 -3.8
2,854,052 + Psest_2666 0.55 +1.0
2,854,052 + Psest_2666 0.55 +0.8
2,854,052 + Psest_2666 0.55 -2.4
2,854,052 + Psest_2666 0.55 +0.2
2,854,052 + Psest_2666 0.55 +0.9
2,854,052 + Psest_2666 0.55 +0.6
2,854,052 + Psest_2666 0.55 -0.9
2,854,052 + Psest_2666 0.55 +0.6
2,854,052 + Psest_2666 0.55 +0.3
2,854,052 + Psest_2666 0.55 -3.6
2,854,052 + Psest_2666 0.55 -1.1
2,854,052 + Psest_2666 0.55 -0.3
2,854,053 - Psest_2666 0.55 -0.9
2,854,053 - Psest_2666 0.55 +0.9
2,854,164 - Psest_2666 0.64 +0.9
2,854,182 - Psest_2666 0.66 -0.3

Or see this region's nucleotide sequence