Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2364

Experiment: Paraquat dichloride 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2362 and Psest_2363 overlap by 4 nucleotidesPsest_2363 and Psest_2364 overlap by 4 nucleotidesPsest_2364 and Psest_2365 are separated by 2 nucleotidesPsest_2365 and Psest_2366 are separated by 3 nucleotides Psest_2362: Psest_2362 - Zn-dependent hydrolases, including glyoxylases, at 2,516,338 to 2,517,120 _2362 Psest_2363: Psest_2363 - hypothetical protein, at 2,517,117 to 2,517,926 _2363 Psest_2364: Psest_2364 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 2,517,923 to 2,518,801 _2364 Psest_2365: Psest_2365 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 2,518,804 to 2,519,643 _2365 Psest_2366: Psest_2366 - Homoserine acetyltransferase, at 2,519,647 to 2,520,669 _2366 Position (kb) 2517 2518 2519Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2517.109 kb on + strandat 2517.139 kb on - strandat 2517.208 kb on - strand, within Psest_2363at 2517.208 kb on - strand, within Psest_2363at 2517.208 kb on - strand, within Psest_2363at 2517.208 kb on - strand, within Psest_2363at 2517.362 kb on + strand, within Psest_2363at 2517.362 kb on + strand, within Psest_2363at 2517.363 kb on - strand, within Psest_2363at 2517.363 kb on - strand, within Psest_2363at 2517.363 kb on - strand, within Psest_2363at 2517.477 kb on + strand, within Psest_2363at 2517.478 kb on - strand, within Psest_2363at 2517.588 kb on + strand, within Psest_2363at 2517.588 kb on + strand, within Psest_2363at 2517.588 kb on + strand, within Psest_2363at 2517.589 kb on - strand, within Psest_2363at 2517.656 kb on - strand, within Psest_2363at 2517.656 kb on - strand, within Psest_2363at 2517.796 kb on - strand, within Psest_2363at 2517.905 kb on + strandat 2518.289 kb on + strand, within Psest_2364at 2518.289 kb on + strand, within Psest_2364at 2518.290 kb on - strand, within Psest_2364at 2518.290 kb on - strand, within Psest_2364at 2518.349 kb on + strand, within Psest_2364at 2518.350 kb on - strand, within Psest_2364at 2518.350 kb on - strand, within Psest_2364at 2518.350 kb on - strand, within Psest_2364at 2518.616 kb on + strand, within Psest_2364at 2518.617 kb on - strand, within Psest_2364at 2518.685 kb on + strand, within Psest_2364at 2518.685 kb on + strand, within Psest_2364at 2518.685 kb on + strand, within Psest_2364at 2518.685 kb on + strand, within Psest_2364at 2518.685 kb on + strand, within Psest_2364at 2518.685 kb on + strand, within Psest_2364at 2518.686 kb on - strand, within Psest_2364at 2518.686 kb on - strand, within Psest_2364at 2518.686 kb on - strand, within Psest_2364at 2519.431 kb on + strand, within Psest_2365at 2519.432 kb on - strand, within Psest_2365at 2519.432 kb on - strand, within Psest_2365at 2519.432 kb on - strand, within Psest_2365at 2519.432 kb on - strand, within Psest_2365at 2519.432 kb on - strand, within Psest_2365at 2519.660 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.015 mg/ml
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2,517,109 + +1.8
2,517,139 - -2.4
2,517,208 - Psest_2363 0.11 +0.5
2,517,208 - Psest_2363 0.11 +1.1
2,517,208 - Psest_2363 0.11 +0.8
2,517,208 - Psest_2363 0.11 -0.4
2,517,362 + Psest_2363 0.30 +1.6
2,517,362 + Psest_2363 0.30 +0.7
2,517,363 - Psest_2363 0.30 -0.5
2,517,363 - Psest_2363 0.30 +2.9
2,517,363 - Psest_2363 0.30 +0.2
2,517,477 + Psest_2363 0.44 +0.4
2,517,478 - Psest_2363 0.45 -0.5
2,517,588 + Psest_2363 0.58 -0.1
2,517,588 + Psest_2363 0.58 +1.6
2,517,588 + Psest_2363 0.58 +0.9
2,517,589 - Psest_2363 0.58 -0.0
2,517,656 - Psest_2363 0.67 +0.0
2,517,656 - Psest_2363 0.67 -0.3
2,517,796 - Psest_2363 0.84 +0.0
2,517,905 + -0.6
2,518,289 + Psest_2364 0.42 -1.3
2,518,289 + Psest_2364 0.42 -1.1
2,518,290 - Psest_2364 0.42 -1.0
2,518,290 - Psest_2364 0.42 -0.5
2,518,349 + Psest_2364 0.48 -1.0
2,518,350 - Psest_2364 0.49 -2.8
2,518,350 - Psest_2364 0.49 -0.7
2,518,350 - Psest_2364 0.49 -0.6
2,518,616 + Psest_2364 0.79 +0.8
2,518,617 - Psest_2364 0.79 -3.2
2,518,685 + Psest_2364 0.87 -1.4
2,518,685 + Psest_2364 0.87 +1.6
2,518,685 + Psest_2364 0.87 +1.3
2,518,685 + Psest_2364 0.87 +1.3
2,518,685 + Psest_2364 0.87 +0.0
2,518,685 + Psest_2364 0.87 -0.1
2,518,686 - Psest_2364 0.87 -0.1
2,518,686 - Psest_2364 0.87 -0.0
2,518,686 - Psest_2364 0.87 -0.8
2,519,431 + Psest_2365 0.75 -0.6
2,519,432 - Psest_2365 0.75 -0.3
2,519,432 - Psest_2365 0.75 +1.0
2,519,432 - Psest_2365 0.75 +0.1
2,519,432 - Psest_2365 0.75 +0.2
2,519,432 - Psest_2365 0.75 +1.1
2,519,660 - +2.5

Or see this region's nucleotide sequence