Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2132

Experiment: Paraquat dichloride 0.015 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_2130 and Psest_2131 are separated by 202 nucleotidesPsest_2131 and Psest_2132 are separated by 63 nucleotidesPsest_2132 and Psest_2133 are separated by 8 nucleotides Psest_2130: Psest_2130 - exodeoxyribonuclease III, at 2,262,519 to 2,263,331 _2130 Psest_2131: Psest_2131 - Acetyltransferases, at 2,263,534 to 2,264,169 _2131 Psest_2132: Psest_2132 - Outer membrane protein, at 2,264,233 to 2,266,047 _2132 Psest_2133: Psest_2133 - Uncharacterized protein conserved in bacteria, at 2,266,056 to 2,269,724 _2133 Position (kb) 2264 2265 2266 2267Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2263.350 kb on + strandat 2263.445 kb on - strandat 2263.445 kb on - strandat 2263.445 kb on - strandat 2263.455 kb on - strandat 2263.492 kb on + strandat 2263.493 kb on - strandat 2263.601 kb on - strand, within Psest_2131at 2263.601 kb on - strand, within Psest_2131at 2263.633 kb on + strand, within Psest_2131at 2263.713 kb on - strand, within Psest_2131at 2263.937 kb on + strand, within Psest_2131at 2263.937 kb on + strand, within Psest_2131at 2263.937 kb on + strand, within Psest_2131at 2263.937 kb on + strand, within Psest_2131at 2263.938 kb on - strand, within Psest_2131at 2263.938 kb on - strand, within Psest_2131at 2264.065 kb on + strand, within Psest_2131at 2264.168 kb on - strandat 2264.260 kb on - strandat 2264.270 kb on + strandat 2264.306 kb on + strandat 2264.307 kb on - strandat 2264.452 kb on + strand, within Psest_2132at 2264.452 kb on + strand, within Psest_2132at 2264.452 kb on + strand, within Psest_2132at 2264.452 kb on + strand, within Psest_2132at 2264.452 kb on + strand, within Psest_2132at 2264.452 kb on + strand, within Psest_2132at 2264.452 kb on + strand, within Psest_2132at 2264.452 kb on + strand, within Psest_2132at 2264.453 kb on - strand, within Psest_2132at 2264.453 kb on - strand, within Psest_2132at 2264.453 kb on - strand, within Psest_2132at 2264.453 kb on - strand, within Psest_2132at 2264.453 kb on - strand, within Psest_2132at 2264.453 kb on - strand, within Psest_2132at 2264.453 kb on - strand, within Psest_2132at 2264.453 kb on - strand, within Psest_2132at 2264.453 kb on - strand, within Psest_2132at 2264.453 kb on - strand, within Psest_2132at 2264.456 kb on + strand, within Psest_2132at 2264.456 kb on + strand, within Psest_2132at 2264.456 kb on + strand, within Psest_2132at 2264.456 kb on + strand, within Psest_2132at 2264.456 kb on + strand, within Psest_2132at 2264.456 kb on + strand, within Psest_2132at 2264.456 kb on + strand, within Psest_2132at 2264.456 kb on + strand, within Psest_2132at 2264.456 kb on + strand, within Psest_2132at 2264.456 kb on + strand, within Psest_2132at 2264.456 kb on + strand, within Psest_2132at 2264.456 kb on + strand, within Psest_2132at 2264.457 kb on - strand, within Psest_2132at 2264.457 kb on - strand, within Psest_2132at 2264.457 kb on - strand, within Psest_2132at 2264.457 kb on - strand, within Psest_2132at 2264.457 kb on - strand, within Psest_2132at 2264.457 kb on - strand, within Psest_2132at 2264.457 kb on - strand, within Psest_2132at 2264.457 kb on - strand, within Psest_2132at 2264.457 kb on - strand, within Psest_2132at 2265.023 kb on - strand, within Psest_2132at 2265.188 kb on + strand, within Psest_2132at 2265.189 kb on - strand, within Psest_2132at 2265.208 kb on + strand, within Psest_2132at 2265.208 kb on + strand, within Psest_2132at 2265.208 kb on + strand, within Psest_2132at 2265.209 kb on - strand, within Psest_2132at 2265.209 kb on - strand, within Psest_2132at 2265.259 kb on + strand, within Psest_2132at 2265.260 kb on - strand, within Psest_2132at 2265.439 kb on + strand, within Psest_2132at 2265.439 kb on + strand, within Psest_2132at 2265.439 kb on + strand, within Psest_2132at 2265.439 kb on + strand, within Psest_2132at 2265.440 kb on - strand, within Psest_2132at 2265.440 kb on - strand, within Psest_2132at 2265.440 kb on - strand, within Psest_2132at 2265.440 kb on - strand, within Psest_2132at 2265.440 kb on - strand, within Psest_2132at 2265.440 kb on - strand, within Psest_2132at 2265.468 kb on + strand, within Psest_2132at 2265.468 kb on + strand, within Psest_2132at 2265.469 kb on - strand, within Psest_2132at 2265.469 kb on - strand, within Psest_2132at 2265.469 kb on - strand, within Psest_2132at 2265.493 kb on + strand, within Psest_2132at 2265.493 kb on + strand, within Psest_2132at 2265.499 kb on + strand, within Psest_2132at 2265.499 kb on + strand, within Psest_2132at 2265.499 kb on + strand, within Psest_2132at 2265.499 kb on + strand, within Psest_2132at 2265.500 kb on - strand, within Psest_2132at 2265.628 kb on - strand, within Psest_2132at 2265.694 kb on + strand, within Psest_2132at 2265.694 kb on + strand, within Psest_2132at 2265.722 kb on - strand, within Psest_2132at 2265.722 kb on - strand, within Psest_2132at 2265.722 kb on - strand, within Psest_2132at 2265.835 kb on + strand, within Psest_2132at 2265.841 kb on + strand, within Psest_2132at 2265.841 kb on + strand, within Psest_2132at 2266.127 kb on + strandat 2266.128 kb on - strandat 2266.162 kb on + strandat 2266.426 kb on + strand, within Psest_2133at 2266.426 kb on + strand, within Psest_2133at 2266.427 kb on - strand, within Psest_2133at 2266.520 kb on + strand, within Psest_2133at 2266.522 kb on + strand, within Psest_2133at 2266.522 kb on + strand, within Psest_2133at 2266.522 kb on + strand, within Psest_2133at 2266.522 kb on + strand, within Psest_2133at 2266.522 kb on + strand, within Psest_2133at 2266.522 kb on + strand, within Psest_2133at 2266.522 kb on + strand, within Psest_2133at 2266.522 kb on + strand, within Psest_2133at 2266.522 kb on + strand, within Psest_2133at 2266.522 kb on + strand, within Psest_2133at 2266.522 kb on + strand, within Psest_2133at 2266.522 kb on + strand, within Psest_2133at 2266.523 kb on - strand, within Psest_2133at 2266.523 kb on - strand, within Psest_2133at 2266.523 kb on - strand, within Psest_2133at 2266.523 kb on - strand, within Psest_2133at 2266.523 kb on - strand, within Psest_2133at 2266.717 kb on - strand, within Psest_2133at 2266.953 kb on - strand, within Psest_2133at 2267.008 kb on + strand, within Psest_2133at 2267.009 kb on - strand, within Psest_2133

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.015 mg/ml
remove
2,263,350 + -1.6
2,263,445 - -0.5
2,263,445 - -0.7
2,263,445 - +1.8
2,263,455 - -0.2
2,263,492 + -0.9
2,263,493 - -1.9
2,263,601 - Psest_2131 0.11 +0.5
2,263,601 - Psest_2131 0.11 +2.0
2,263,633 + Psest_2131 0.16 +1.9
2,263,713 - Psest_2131 0.28 -1.1
2,263,937 + Psest_2131 0.63 +0.1
2,263,937 + Psest_2131 0.63 +0.6
2,263,937 + Psest_2131 0.63 +0.3
2,263,937 + Psest_2131 0.63 -0.5
2,263,938 - Psest_2131 0.64 -1.2
2,263,938 - Psest_2131 0.64 -1.3
2,264,065 + Psest_2131 0.83 -2.0
2,264,168 - +1.8
2,264,260 - +0.4
2,264,270 + -2.4
2,264,306 + +1.2
2,264,307 - +2.5
2,264,452 + Psest_2132 0.12 +3.0
2,264,452 + Psest_2132 0.12 +1.0
2,264,452 + Psest_2132 0.12 -1.2
2,264,452 + Psest_2132 0.12 +2.5
2,264,452 + Psest_2132 0.12 +0.2
2,264,452 + Psest_2132 0.12 +0.9
2,264,452 + Psest_2132 0.12 +2.0
2,264,452 + Psest_2132 0.12 +2.5
2,264,453 - Psest_2132 0.12 +2.3
2,264,453 - Psest_2132 0.12 +1.7
2,264,453 - Psest_2132 0.12 +0.7
2,264,453 - Psest_2132 0.12 +1.5
2,264,453 - Psest_2132 0.12 +3.8
2,264,453 - Psest_2132 0.12 +1.1
2,264,453 - Psest_2132 0.12 +4.3
2,264,453 - Psest_2132 0.12 +2.5
2,264,453 - Psest_2132 0.12 +2.5
2,264,453 - Psest_2132 0.12 +1.3
2,264,456 + Psest_2132 0.12 +0.1
2,264,456 + Psest_2132 0.12 +2.6
2,264,456 + Psest_2132 0.12 -0.2
2,264,456 + Psest_2132 0.12 +1.5
2,264,456 + Psest_2132 0.12 +5.0
2,264,456 + Psest_2132 0.12 +0.4
2,264,456 + Psest_2132 0.12 +0.1
2,264,456 + Psest_2132 0.12 +0.6
2,264,456 + Psest_2132 0.12 +0.7
2,264,456 + Psest_2132 0.12 +3.0
2,264,456 + Psest_2132 0.12 -0.4
2,264,456 + Psest_2132 0.12 +1.4
2,264,457 - Psest_2132 0.12 +1.8
2,264,457 - Psest_2132 0.12 +0.6
2,264,457 - Psest_2132 0.12 -0.6
2,264,457 - Psest_2132 0.12 +3.4
2,264,457 - Psest_2132 0.12 +1.3
2,264,457 - Psest_2132 0.12 +1.2
2,264,457 - Psest_2132 0.12 +0.5
2,264,457 - Psest_2132 0.12 +2.0
2,264,457 - Psest_2132 0.12 +3.3
2,265,023 - Psest_2132 0.44 +1.0
2,265,188 + Psest_2132 0.53 +0.0
2,265,189 - Psest_2132 0.53 +2.8
2,265,208 + Psest_2132 0.54 +1.2
2,265,208 + Psest_2132 0.54 +2.4
2,265,208 + Psest_2132 0.54 +3.1
2,265,209 - Psest_2132 0.54 +4.5
2,265,209 - Psest_2132 0.54 +2.5
2,265,259 + Psest_2132 0.57 -0.0
2,265,260 - Psest_2132 0.57 -2.8
2,265,439 + Psest_2132 0.66 -0.9
2,265,439 + Psest_2132 0.66 +2.4
2,265,439 + Psest_2132 0.66 +0.6
2,265,439 + Psest_2132 0.66 +1.7
2,265,440 - Psest_2132 0.67 +1.2
2,265,440 - Psest_2132 0.67 +4.7
2,265,440 - Psest_2132 0.67 +2.1
2,265,440 - Psest_2132 0.67 -0.2
2,265,440 - Psest_2132 0.67 +0.5
2,265,440 - Psest_2132 0.67 +0.6
2,265,468 + Psest_2132 0.68 +1.8
2,265,468 + Psest_2132 0.68 -0.2
2,265,469 - Psest_2132 0.68 +1.2
2,265,469 - Psest_2132 0.68 +0.9
2,265,469 - Psest_2132 0.68 -0.8
2,265,493 + Psest_2132 0.69 +0.2
2,265,493 + Psest_2132 0.69 +2.4
2,265,499 + Psest_2132 0.70 +1.9
2,265,499 + Psest_2132 0.70 -0.5
2,265,499 + Psest_2132 0.70 +2.2
2,265,499 + Psest_2132 0.70 +2.5
2,265,500 - Psest_2132 0.70 +1.7
2,265,628 - Psest_2132 0.77 +0.8
2,265,694 + Psest_2132 0.80 +0.8
2,265,694 + Psest_2132 0.80 +1.7
2,265,722 - Psest_2132 0.82 +1.6
2,265,722 - Psest_2132 0.82 +2.2
2,265,722 - Psest_2132 0.82 +0.6
2,265,835 + Psest_2132 0.88 +1.7
2,265,841 + Psest_2132 0.89 +3.6
2,265,841 + Psest_2132 0.89 +2.1
2,266,127 + +0.5
2,266,128 - +4.6
2,266,162 + +0.3
2,266,426 + Psest_2133 0.10 +1.4
2,266,426 + Psest_2133 0.10 +1.0
2,266,427 - Psest_2133 0.10 +2.0
2,266,520 + Psest_2133 0.13 -0.0
2,266,522 + Psest_2133 0.13 +0.8
2,266,522 + Psest_2133 0.13 +1.7
2,266,522 + Psest_2133 0.13 +1.5
2,266,522 + Psest_2133 0.13 +3.1
2,266,522 + Psest_2133 0.13 +2.9
2,266,522 + Psest_2133 0.13 +0.3
2,266,522 + Psest_2133 0.13 +1.9
2,266,522 + Psest_2133 0.13 +1.5
2,266,522 + Psest_2133 0.13 +1.8
2,266,522 + Psest_2133 0.13 +3.0
2,266,522 + Psest_2133 0.13 +2.8
2,266,522 + Psest_2133 0.13 +1.2
2,266,523 - Psest_2133 0.13 -0.0
2,266,523 - Psest_2133 0.13 +1.9
2,266,523 - Psest_2133 0.13 +2.5
2,266,523 - Psest_2133 0.13 +0.1
2,266,523 - Psest_2133 0.13 -1.0
2,266,717 - Psest_2133 0.18 +1.8
2,266,953 - Psest_2133 0.24 +2.3
2,267,008 + Psest_2133 0.26 -0.0
2,267,009 - Psest_2133 0.26 +1.7

Or see this region's nucleotide sequence