Experiment: Paraquat dichloride 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0013 and Psest_0014 are separated by 26 nucleotides Psest_0014 and Psest_0015 are separated by 25 nucleotides Psest_0015 and Psest_0016 are separated by 146 nucleotides Psest_0016 and Psest_0017 overlap by 4 nucleotides
Psest_0013: Psest_0013 - Lauroyl/myristoyl acyltransferase, at 15,128 to 16,015
_0013
Psest_0014: Psest_0014 - PilZ domain., at 16,042 to 16,308
_0014
Psest_0015: Psest_0015 - Tetratricopeptide repeat., at 16,334 to 16,651
_0015
Psest_0016: Psest_0016 - ectoine/hydroxyectoine ABC transporter, ATP-binding protein, at 16,798 to 17,634
_0016
Psest_0017: Psest_0017 - ectoine/hydroxyectoine ABC transporter, permease protein EhuD, at 17,631 to 18,290
_0017
Position (kb) 16
17 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 15.518 kb on + strand, within Psest_0013 at 15.518 kb on + strand, within Psest_0013 at 15.519 kb on - strand, within Psest_0013 at 15.548 kb on + strand, within Psest_0013 at 15.548 kb on + strand, within Psest_0013 at 15.549 kb on - strand, within Psest_0013 at 15.549 kb on - strand, within Psest_0013 at 15.723 kb on + strand, within Psest_0013 at 15.724 kb on - strand, within Psest_0013 at 15.724 kb on - strand, within Psest_0013 at 15.724 kb on - strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.878 kb on + strand, within Psest_0013 at 15.879 kb on - strand, within Psest_0013 at 15.879 kb on - strand, within Psest_0013 at 15.879 kb on - strand, within Psest_0013 at 15.879 kb on - strand, within Psest_0013 at 15.879 kb on - strand, within Psest_0013 at 15.879 kb on - strand, within Psest_0013 at 15.879 kb on - strand, within Psest_0013 at 15.879 kb on - strand, within Psest_0013 at 15.932 kb on + strand at 15.932 kb on + strand at 15.932 kb on + strand at 15.933 kb on - strand at 15.933 kb on - strand at 15.933 kb on - strand at 15.933 kb on - strand at 15.944 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.956 kb on + strand at 15.957 kb on - strand at 15.957 kb on - strand at 15.957 kb on - strand at 15.957 kb on - strand at 15.957 kb on - strand at 15.957 kb on - strand at 15.957 kb on - strand at 16.041 kb on + strand at 16.042 kb on - strand at 16.042 kb on - strand at 16.156 kb on + strand, within Psest_0014 at 16.156 kb on + strand, within Psest_0014 at 16.156 kb on + strand, within Psest_0014 at 16.156 kb on + strand, within Psest_0014 at 16.157 kb on - strand, within Psest_0014 at 16.181 kb on + strand, within Psest_0014 at 16.181 kb on + strand, within Psest_0014 at 16.182 kb on - strand, within Psest_0014 at 16.506 kb on + strand, within Psest_0015 at 16.575 kb on + strand, within Psest_0015 at 16.575 kb on + strand, within Psest_0015 at 16.575 kb on + strand, within Psest_0015 at 16.576 kb on - strand, within Psest_0015 at 16.698 kb on + strand at 16.699 kb on - strand at 16.733 kb on + strand at 16.734 kb on - strand at 16.734 kb on - strand at 16.734 kb on - strand at 17.287 kb on + strand, within Psest_0016 at 17.287 kb on + strand, within Psest_0016 at 17.287 kb on + strand, within Psest_0016 at 17.287 kb on + strand, within Psest_0016 at 17.287 kb on + strand, within Psest_0016 at 17.287 kb on + strand, within Psest_0016 at 17.287 kb on + strand, within Psest_0016 at 17.288 kb on - strand, within Psest_0016 at 17.288 kb on - strand, within Psest_0016 at 17.288 kb on - strand, within Psest_0016 at 17.416 kb on + strand, within Psest_0016 at 17.417 kb on - strand, within Psest_0016 at 17.628 kb on + strand at 17.629 kb on - strand at 17.629 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.015 mg/ml remove 15,518 + Psest_0013 0.44 -0.8 15,518 + Psest_0013 0.44 -0.8 15,519 - Psest_0013 0.44 +0.3 15,548 + Psest_0013 0.47 +2.0 15,548 + Psest_0013 0.47 +1.8 15,549 - Psest_0013 0.47 +1.2 15,549 - Psest_0013 0.47 -1.0 15,723 + Psest_0013 0.67 +0.8 15,724 - Psest_0013 0.67 +1.0 15,724 - Psest_0013 0.67 -1.1 15,724 - Psest_0013 0.67 +2.0 15,878 + Psest_0013 0.84 +1.8 15,878 + Psest_0013 0.84 -0.3 15,878 + Psest_0013 0.84 +2.5 15,878 + Psest_0013 0.84 +1.3 15,878 + Psest_0013 0.84 +0.7 15,878 + Psest_0013 0.84 +0.5 15,878 + Psest_0013 0.84 +1.5 15,878 + Psest_0013 0.84 +0.9 15,878 + Psest_0013 0.84 +0.2 15,878 + Psest_0013 0.84 +1.1 15,878 + Psest_0013 0.84 -0.2 15,879 - Psest_0013 0.85 +1.5 15,879 - Psest_0013 0.85 +2.8 15,879 - Psest_0013 0.85 -0.8 15,879 - Psest_0013 0.85 +0.1 15,879 - Psest_0013 0.85 +0.4 15,879 - Psest_0013 0.85 -1.6 15,879 - Psest_0013 0.85 -0.8 15,879 - Psest_0013 0.85 -1.6 15,932 + +1.0 15,932 + +1.6 15,932 + -1.2 15,933 - +2.3 15,933 - +0.2 15,933 - +0.7 15,933 - +1.7 15,944 + +3.4 15,956 + -1.0 15,956 + +3.4 15,956 + +1.2 15,956 + -1.8 15,956 + -0.2 15,956 + +0.8 15,956 + +1.3 15,956 + +1.2 15,956 + -1.7 15,956 + +2.4 15,956 + +1.8 15,956 + +0.2 15,956 + -1.0 15,956 + +1.9 15,956 + +0.4 15,956 + -1.5 15,956 + +0.2 15,957 - -0.2 15,957 - +1.8 15,957 - -2.6 15,957 - -2.2 15,957 - +1.2 15,957 - +0.8 15,957 - +1.8 16,041 + -0.8 16,042 - -2.9 16,042 - +0.4 16,156 + Psest_0014 0.43 +1.2 16,156 + Psest_0014 0.43 -0.9 16,156 + Psest_0014 0.43 -1.6 16,156 + Psest_0014 0.43 -1.0 16,157 - Psest_0014 0.43 +0.2 16,181 + Psest_0014 0.52 +0.2 16,181 + Psest_0014 0.52 +1.0 16,182 - Psest_0014 0.52 -2.0 16,506 + Psest_0015 0.54 -1.0 16,575 + Psest_0015 0.76 -3.6 16,575 + Psest_0015 0.76 -1.9 16,575 + Psest_0015 0.76 -1.4 16,576 - Psest_0015 0.76 -3.4 16,698 + -1.4 16,699 - -0.1 16,733 + -0.2 16,734 - +2.4 16,734 - +0.8 16,734 - +0.0 17,287 + Psest_0016 0.58 -1.4 17,287 + Psest_0016 0.58 +0.4 17,287 + Psest_0016 0.58 -2.6 17,287 + Psest_0016 0.58 -1.3 17,287 + Psest_0016 0.58 -0.5 17,287 + Psest_0016 0.58 -1.5 17,287 + Psest_0016 0.58 -1.0 17,288 - Psest_0016 0.59 +0.2 17,288 - Psest_0016 0.59 -1.2 17,288 - Psest_0016 0.59 -2.5 17,416 + Psest_0016 0.74 +1.6 17,417 - Psest_0016 0.74 -0.6 17,628 + -0.3 17,629 - -0.7 17,629 - +0.4
Or see this region's nucleotide sequence