Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0418

Experiment: A22 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0417 and Psest_0418 are separated by 149 nucleotidesPsest_0418 and Psest_0419 are separated by 137 nucleotides Psest_0417: Psest_0417 - Acyl-CoA dehydrogenases, at 451,828 to 453,633 _0417 Psest_0418: Psest_0418 - diguanylate cyclase (GGDEF) domain, at 453,783 to 455,072 _0418 Psest_0419: Psest_0419 - Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data), at 455,210 to 456,988 _0419 Position (kb) 453 454 455 456Strain fitness (log2 ratio) -2 -1 0 1 2 3at 452.920 kb on + strand, within Psest_0417at 453.071 kb on + strand, within Psest_0417at 453.073 kb on + strand, within Psest_0417at 453.073 kb on + strand, within Psest_0417at 453.074 kb on - strand, within Psest_0417at 453.145 kb on + strand, within Psest_0417at 453.145 kb on + strand, within Psest_0417at 453.394 kb on + strand, within Psest_0417at 453.403 kb on + strand, within Psest_0417at 453.526 kb on + strandat 453.648 kb on - strandat 453.766 kb on - strandat 453.897 kb on + strandat 453.897 kb on + strandat 453.897 kb on + strandat 453.897 kb on + strandat 453.897 kb on + strandat 453.898 kb on - strandat 453.898 kb on - strandat 453.898 kb on - strandat 453.898 kb on - strandat 453.917 kb on - strand, within Psest_0418at 453.952 kb on - strand, within Psest_0418at 453.952 kb on - strand, within Psest_0418at 453.952 kb on - strand, within Psest_0418at 453.952 kb on - strand, within Psest_0418at 453.991 kb on - strand, within Psest_0418at 453.999 kb on + strand, within Psest_0418at 453.999 kb on + strand, within Psest_0418at 453.999 kb on + strand, within Psest_0418at 453.999 kb on + strand, within Psest_0418at 454.026 kb on + strand, within Psest_0418at 454.026 kb on + strand, within Psest_0418at 454.026 kb on + strand, within Psest_0418at 454.026 kb on + strand, within Psest_0418at 454.026 kb on + strand, within Psest_0418at 454.027 kb on - strand, within Psest_0418at 454.030 kb on - strand, within Psest_0418at 454.341 kb on + strand, within Psest_0418at 454.342 kb on - strand, within Psest_0418at 454.497 kb on + strand, within Psest_0418at 454.497 kb on + strand, within Psest_0418at 454.497 kb on + strand, within Psest_0418at 454.497 kb on + strand, within Psest_0418at 454.498 kb on - strand, within Psest_0418at 454.582 kb on - strand, within Psest_0418at 454.632 kb on + strand, within Psest_0418at 454.632 kb on + strand, within Psest_0418at 454.632 kb on + strand, within Psest_0418at 454.632 kb on + strand, within Psest_0418at 454.632 kb on + strand, within Psest_0418at 454.632 kb on + strand, within Psest_0418at 454.632 kb on + strand, within Psest_0418at 454.632 kb on + strand, within Psest_0418at 454.632 kb on + strand, within Psest_0418at 454.632 kb on + strand, within Psest_0418at 454.633 kb on - strand, within Psest_0418at 454.633 kb on - strand, within Psest_0418at 454.633 kb on - strand, within Psest_0418at 454.633 kb on - strand, within Psest_0418at 454.633 kb on - strand, within Psest_0418at 454.633 kb on - strand, within Psest_0418at 454.633 kb on - strand, within Psest_0418at 454.633 kb on - strand, within Psest_0418at 454.633 kb on - strand, within Psest_0418at 454.633 kb on - strand, within Psest_0418at 454.645 kb on + strand, within Psest_0418at 454.645 kb on + strand, within Psest_0418at 454.646 kb on - strand, within Psest_0418at 454.691 kb on - strand, within Psest_0418at 454.790 kb on - strand, within Psest_0418at 454.809 kb on + strand, within Psest_0418at 454.809 kb on + strand, within Psest_0418at 454.809 kb on + strand, within Psest_0418at 454.810 kb on - strand, within Psest_0418at 454.810 kb on - strand, within Psest_0418at 454.810 kb on - strand, within Psest_0418at 454.810 kb on - strand, within Psest_0418at 454.810 kb on - strand, within Psest_0418at 454.810 kb on - strand, within Psest_0418at 454.810 kb on - strand, within Psest_0418at 454.810 kb on - strand, within Psest_0418at 454.810 kb on - strand, within Psest_0418at 454.810 kb on - strand, within Psest_0418at 454.963 kb on + strandat 454.963 kb on + strandat 454.964 kb on - strandat 454.964 kb on - strandat 455.023 kb on + strandat 455.023 kb on + strandat 455.023 kb on + strandat 455.023 kb on + strandat 455.023 kb on + strandat 455.024 kb on - strandat 455.047 kb on + strandat 455.051 kb on + strandat 455.051 kb on + strandat 455.051 kb on + strandat 455.051 kb on + strandat 455.051 kb on + strandat 455.051 kb on + strandat 455.052 kb on - strandat 455.052 kb on - strandat 455.052 kb on - strandat 455.052 kb on - strandat 455.052 kb on - strandat 455.052 kb on - strandat 455.052 kb on - strandat 455.052 kb on - strandat 455.071 kb on - strandat 455.087 kb on - strandat 455.219 kb on + strandat 455.459 kb on + strand, within Psest_0419at 455.460 kb on - strand, within Psest_0419at 455.460 kb on - strand, within Psest_0419at 455.460 kb on - strand, within Psest_0419at 455.468 kb on + strand, within Psest_0419at 455.468 kb on + strand, within Psest_0419at 455.468 kb on + strand, within Psest_0419at 455.468 kb on + strand, within Psest_0419at 455.468 kb on + strand, within Psest_0419at 455.469 kb on - strand, within Psest_0419at 455.469 kb on - strand, within Psest_0419at 455.469 kb on - strand, within Psest_0419at 455.469 kb on - strand, within Psest_0419at 455.469 kb on - strand, within Psest_0419at 455.627 kb on + strand, within Psest_0419at 455.660 kb on + strand, within Psest_0419at 455.660 kb on + strand, within Psest_0419at 455.660 kb on + strand, within Psest_0419at 455.660 kb on + strand, within Psest_0419at 455.660 kb on + strand, within Psest_0419at 455.660 kb on + strand, within Psest_0419at 455.660 kb on + strand, within Psest_0419at 455.661 kb on - strand, within Psest_0419at 455.661 kb on - strand, within Psest_0419at 455.661 kb on - strand, within Psest_0419at 455.661 kb on - strand, within Psest_0419at 455.661 kb on - strand, within Psest_0419at 455.661 kb on - strand, within Psest_0419at 455.661 kb on - strand, within Psest_0419at 455.661 kb on - strand, within Psest_0419at 455.661 kb on - strand, within Psest_0419at 455.661 kb on - strand, within Psest_0419at 455.661 kb on - strand, within Psest_0419at 455.661 kb on - strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.675 kb on + strand, within Psest_0419at 455.676 kb on - strand, within Psest_0419at 455.676 kb on - strand, within Psest_0419at 455.676 kb on - strand, within Psest_0419at 455.676 kb on - strand, within Psest_0419at 455.676 kb on - strand, within Psest_0419at 455.676 kb on - strand, within Psest_0419at 455.676 kb on - strand, within Psest_0419at 455.676 kb on - strand, within Psest_0419at 455.676 kb on - strand, within Psest_0419at 455.676 kb on - strand, within Psest_0419at 455.676 kb on - strand, within Psest_0419at 455.676 kb on - strand, within Psest_0419at 455.676 kb on - strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.777 kb on + strand, within Psest_0419at 455.778 kb on - strand, within Psest_0419at 455.778 kb on - strand, within Psest_0419at 455.778 kb on - strand, within Psest_0419at 455.778 kb on - strand, within Psest_0419at 455.778 kb on - strand, within Psest_0419at 455.778 kb on - strand, within Psest_0419at 455.778 kb on - strand, within Psest_0419at 455.778 kb on - strand, within Psest_0419at 455.778 kb on - strand, within Psest_0419at 455.778 kb on - strand, within Psest_0419at 455.779 kb on + strand, within Psest_0419at 455.780 kb on - strand, within Psest_0419at 455.780 kb on - strand, within Psest_0419at 455.780 kb on - strand, within Psest_0419at 455.780 kb on - strand, within Psest_0419at 455.916 kb on + strand, within Psest_0419at 455.916 kb on + strand, within Psest_0419at 455.917 kb on - strand, within Psest_0419at 456.004 kb on + strand, within Psest_0419at 456.004 kb on + strand, within Psest_0419at 456.004 kb on + strand, within Psest_0419at 456.005 kb on - strand, within Psest_0419at 456.005 kb on - strand, within Psest_0419

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.005 mg/ml
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452,920 + Psest_0417 0.60 +0.1
453,071 + Psest_0417 0.69 +1.6
453,073 + Psest_0417 0.69 +0.6
453,073 + Psest_0417 0.69 -0.4
453,074 - Psest_0417 0.69 +1.6
453,145 + Psest_0417 0.73 +0.9
453,145 + Psest_0417 0.73 -0.4
453,394 + Psest_0417 0.87 -0.4
453,403 + Psest_0417 0.87 +0.1
453,526 + +0.1
453,648 - -0.2
453,766 - -0.2
453,897 + +1.1
453,897 + -1.5
453,897 + +0.4
453,897 + -1.0
453,897 + +1.3
453,898 - -0.6
453,898 - +1.0
453,898 - +2.2
453,898 - +1.4
453,917 - Psest_0418 0.10 +1.3
453,952 - Psest_0418 0.13 +1.1
453,952 - Psest_0418 0.13 -0.5
453,952 - Psest_0418 0.13 +0.4
453,952 - Psest_0418 0.13 +2.0
453,991 - Psest_0418 0.16 +0.1
453,999 + Psest_0418 0.17 +0.3
453,999 + Psest_0418 0.17 -0.5
453,999 + Psest_0418 0.17 +0.1
453,999 + Psest_0418 0.17 +0.1
454,026 + Psest_0418 0.19 +0.1
454,026 + Psest_0418 0.19 +0.6
454,026 + Psest_0418 0.19 +0.5
454,026 + Psest_0418 0.19 +1.4
454,026 + Psest_0418 0.19 +1.1
454,027 - Psest_0418 0.19 -1.4
454,030 - Psest_0418 0.19 +2.0
454,341 + Psest_0418 0.43 +2.1
454,342 - Psest_0418 0.43 -0.7
454,497 + Psest_0418 0.55 +0.2
454,497 + Psest_0418 0.55 +0.8
454,497 + Psest_0418 0.55 +0.1
454,497 + Psest_0418 0.55 -1.5
454,498 - Psest_0418 0.55 -1.2
454,582 - Psest_0418 0.62 +1.1
454,632 + Psest_0418 0.66 +2.8
454,632 + Psest_0418 0.66 +1.3
454,632 + Psest_0418 0.66 -0.8
454,632 + Psest_0418 0.66 +0.2
454,632 + Psest_0418 0.66 +0.3
454,632 + Psest_0418 0.66 +0.1
454,632 + Psest_0418 0.66 +0.6
454,632 + Psest_0418 0.66 -0.6
454,632 + Psest_0418 0.66 -0.3
454,632 + Psest_0418 0.66 +0.3
454,633 - Psest_0418 0.66 +0.1
454,633 - Psest_0418 0.66 +3.1
454,633 - Psest_0418 0.66 -1.0
454,633 - Psest_0418 0.66 +0.0
454,633 - Psest_0418 0.66 -1.2
454,633 - Psest_0418 0.66 +1.5
454,633 - Psest_0418 0.66 -0.5
454,633 - Psest_0418 0.66 -0.1
454,633 - Psest_0418 0.66 +0.3
454,633 - Psest_0418 0.66 -1.4
454,645 + Psest_0418 0.67 +1.2
454,645 + Psest_0418 0.67 +1.1
454,646 - Psest_0418 0.67 +0.5
454,691 - Psest_0418 0.70 +1.3
454,790 - Psest_0418 0.78 -1.2
454,809 + Psest_0418 0.80 +0.8
454,809 + Psest_0418 0.80 +1.4
454,809 + Psest_0418 0.80 +1.7
454,810 - Psest_0418 0.80 +0.6
454,810 - Psest_0418 0.80 +0.8
454,810 - Psest_0418 0.80 +0.5
454,810 - Psest_0418 0.80 +0.4
454,810 - Psest_0418 0.80 -0.4
454,810 - Psest_0418 0.80 +0.7
454,810 - Psest_0418 0.80 -0.7
454,810 - Psest_0418 0.80 -0.8
454,810 - Psest_0418 0.80 +1.5
454,810 - Psest_0418 0.80 +2.5
454,963 + -0.7
454,963 + -1.4
454,964 - +1.2
454,964 - -0.8
455,023 + +0.6
455,023 + -0.4
455,023 + -0.4
455,023 + +0.9
455,023 + +1.0
455,024 - +0.3
455,047 + +0.6
455,051 + -0.4
455,051 + -0.5
455,051 + +0.3
455,051 + -0.3
455,051 + +1.1
455,051 + -1.3
455,052 - +1.1
455,052 - +1.5
455,052 - +1.0
455,052 - +0.0
455,052 - +0.1
455,052 - -1.1
455,052 - +0.9
455,052 - +0.3
455,071 - +0.1
455,087 - +0.6
455,219 + +2.2
455,459 + Psest_0419 0.14 -0.6
455,460 - Psest_0419 0.14 +0.5
455,460 - Psest_0419 0.14 +1.6
455,460 - Psest_0419 0.14 +0.2
455,468 + Psest_0419 0.15 +3.3
455,468 + Psest_0419 0.15 -0.7
455,468 + Psest_0419 0.15 -0.4
455,468 + Psest_0419 0.15 +0.6
455,468 + Psest_0419 0.15 +0.1
455,469 - Psest_0419 0.15 -1.4
455,469 - Psest_0419 0.15 -0.8
455,469 - Psest_0419 0.15 +0.7
455,469 - Psest_0419 0.15 +0.5
455,469 - Psest_0419 0.15 +1.1
455,627 + Psest_0419 0.23 -0.2
455,660 + Psest_0419 0.25 -0.2
455,660 + Psest_0419 0.25 -2.4
455,660 + Psest_0419 0.25 -0.9
455,660 + Psest_0419 0.25 -0.1
455,660 + Psest_0419 0.25 -0.1
455,660 + Psest_0419 0.25 -1.2
455,660 + Psest_0419 0.25 -2.1
455,661 - Psest_0419 0.25 +0.3
455,661 - Psest_0419 0.25 -0.2
455,661 - Psest_0419 0.25 +0.2
455,661 - Psest_0419 0.25 -0.4
455,661 - Psest_0419 0.25 +0.6
455,661 - Psest_0419 0.25 +0.9
455,661 - Psest_0419 0.25 -2.2
455,661 - Psest_0419 0.25 -0.3
455,661 - Psest_0419 0.25 +1.2
455,661 - Psest_0419 0.25 +1.3
455,661 - Psest_0419 0.25 -1.9
455,661 - Psest_0419 0.25 +0.5
455,675 + Psest_0419 0.26 +0.5
455,675 + Psest_0419 0.26 -0.3
455,675 + Psest_0419 0.26 -1.8
455,675 + Psest_0419 0.26 +1.1
455,675 + Psest_0419 0.26 -0.7
455,675 + Psest_0419 0.26 -0.2
455,675 + Psest_0419 0.26 -1.5
455,675 + Psest_0419 0.26 -0.4
455,675 + Psest_0419 0.26 +0.1
455,675 + Psest_0419 0.26 -1.0
455,675 + Psest_0419 0.26 -0.0
455,675 + Psest_0419 0.26 +0.1
455,675 + Psest_0419 0.26 -0.2
455,675 + Psest_0419 0.26 -0.5
455,675 + Psest_0419 0.26 +1.4
455,675 + Psest_0419 0.26 +0.5
455,676 - Psest_0419 0.26 +0.1
455,676 - Psest_0419 0.26 +1.2
455,676 - Psest_0419 0.26 +1.5
455,676 - Psest_0419 0.26 +0.2
455,676 - Psest_0419 0.26 +0.1
455,676 - Psest_0419 0.26 -0.6
455,676 - Psest_0419 0.26 +0.6
455,676 - Psest_0419 0.26 -0.4
455,676 - Psest_0419 0.26 +0.1
455,676 - Psest_0419 0.26 +0.0
455,676 - Psest_0419 0.26 +1.6
455,676 - Psest_0419 0.26 +0.1
455,676 - Psest_0419 0.26 +0.3
455,777 + Psest_0419 0.32 -1.3
455,777 + Psest_0419 0.32 +0.3
455,777 + Psest_0419 0.32 +0.6
455,777 + Psest_0419 0.32 +0.8
455,777 + Psest_0419 0.32 +0.3
455,777 + Psest_0419 0.32 +0.8
455,777 + Psest_0419 0.32 -0.4
455,777 + Psest_0419 0.32 -1.1
455,777 + Psest_0419 0.32 +0.0
455,777 + Psest_0419 0.32 -0.1
455,777 + Psest_0419 0.32 +2.9
455,777 + Psest_0419 0.32 -0.9
455,777 + Psest_0419 0.32 -1.2
455,777 + Psest_0419 0.32 -1.0
455,777 + Psest_0419 0.32 -0.2
455,777 + Psest_0419 0.32 +1.5
455,777 + Psest_0419 0.32 +0.2
455,777 + Psest_0419 0.32 +0.8
455,778 - Psest_0419 0.32 -2.0
455,778 - Psest_0419 0.32 -0.1
455,778 - Psest_0419 0.32 +0.6
455,778 - Psest_0419 0.32 -1.1
455,778 - Psest_0419 0.32 +0.9
455,778 - Psest_0419 0.32 -0.8
455,778 - Psest_0419 0.32 -1.3
455,778 - Psest_0419 0.32 +0.0
455,778 - Psest_0419 0.32 +1.4
455,778 - Psest_0419 0.32 -0.4
455,779 + Psest_0419 0.32 +0.5
455,780 - Psest_0419 0.32 +0.5
455,780 - Psest_0419 0.32 +0.3
455,780 - Psest_0419 0.32 +0.7
455,780 - Psest_0419 0.32 +0.5
455,916 + Psest_0419 0.40 +0.1
455,916 + Psest_0419 0.40 +2.6
455,917 - Psest_0419 0.40 +0.3
456,004 + Psest_0419 0.45 -0.6
456,004 + Psest_0419 0.45 +0.9
456,004 + Psest_0419 0.45 -0.2
456,005 - Psest_0419 0.45 +0.3
456,005 - Psest_0419 0.45 -1.1

Or see this region's nucleotide sequence