Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4183

Experiment: A22 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4182 and Psest_4183 are separated by 27 nucleotidesPsest_4183 and Psest_4184 are separated by 166 nucleotidesPsest_4184 and Psest_4185 are separated by 184 nucleotides Psest_4182: Psest_4182 - Flagellar biosynthesis pathway, component FlhA, at 4,359,268 to 4,361,364 _4182 Psest_4183: Psest_4183 - PilZ domain., at 4,361,392 to 4,361,733 _4183 Psest_4184: Psest_4184 - hypothetical protein, at 4,361,900 to 4,362,106 _4184 Psest_4185: Psest_4185 - hypothetical protein, at 4,362,291 to 4,363,712 _4185 Position (kb) 4361 4362Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4360.517 kb on - strand, within Psest_4182at 4360.525 kb on + strand, within Psest_4182at 4360.525 kb on + strand, within Psest_4182at 4360.525 kb on + strand, within Psest_4182at 4360.525 kb on + strand, within Psest_4182at 4360.525 kb on + strand, within Psest_4182at 4360.525 kb on + strand, within Psest_4182at 4360.525 kb on + strand, within Psest_4182at 4360.525 kb on + strand, within Psest_4182at 4360.525 kb on + strand, within Psest_4182at 4360.525 kb on + strand, within Psest_4182at 4360.525 kb on + strand, within Psest_4182at 4360.525 kb on + strand, within Psest_4182at 4360.525 kb on + strand, within Psest_4182at 4360.525 kb on + strand, within Psest_4182at 4360.525 kb on + strand, within Psest_4182at 4360.525 kb on + strand, within Psest_4182at 4360.525 kb on + strand, within Psest_4182at 4360.526 kb on - strand, within Psest_4182at 4360.526 kb on - strand, within Psest_4182at 4360.526 kb on - strand, within Psest_4182at 4360.526 kb on - strand, within Psest_4182at 4360.526 kb on - strand, within Psest_4182at 4360.526 kb on - strand, within Psest_4182at 4360.526 kb on - strand, within Psest_4182at 4360.526 kb on - strand, within Psest_4182at 4360.526 kb on - strand, within Psest_4182at 4360.526 kb on - strand, within Psest_4182at 4360.526 kb on - strand, within Psest_4182at 4360.526 kb on - strand, within Psest_4182at 4360.526 kb on - strand, within Psest_4182at 4360.526 kb on - strand, within Psest_4182at 4360.526 kb on - strand, within Psest_4182at 4360.526 kb on - strand, within Psest_4182at 4360.526 kb on - strand, within Psest_4182at 4360.526 kb on - strand, within Psest_4182at 4360.600 kb on + strand, within Psest_4182at 4360.601 kb on - strand, within Psest_4182at 4360.601 kb on - strand, within Psest_4182at 4360.601 kb on - strand, within Psest_4182at 4360.861 kb on + strand, within Psest_4182at 4360.861 kb on + strand, within Psest_4182at 4360.861 kb on + strand, within Psest_4182at 4360.861 kb on + strand, within Psest_4182at 4360.861 kb on + strand, within Psest_4182at 4360.861 kb on + strand, within Psest_4182at 4360.862 kb on - strand, within Psest_4182at 4360.862 kb on - strand, within Psest_4182at 4360.862 kb on - strand, within Psest_4182at 4360.862 kb on - strand, within Psest_4182at 4360.862 kb on - strand, within Psest_4182at 4360.862 kb on - strand, within Psest_4182at 4360.862 kb on - strand, within Psest_4182at 4360.862 kb on - strand, within Psest_4182at 4360.862 kb on - strand, within Psest_4182at 4360.863 kb on + strand, within Psest_4182at 4360.864 kb on - strand, within Psest_4182at 4360.864 kb on - strand, within Psest_4182at 4360.882 kb on + strand, within Psest_4182at 4361.393 kb on + strandat 4361.394 kb on - strandat 4361.583 kb on - strand, within Psest_4183at 4361.651 kb on + strand, within Psest_4183at 4361.652 kb on - strand, within Psest_4183at 4361.652 kb on - strand, within Psest_4183at 4361.803 kb on + strandat 4361.803 kb on + strandat 4361.803 kb on + strandat 4361.803 kb on + strandat 4361.803 kb on + strandat 4361.803 kb on + strandat 4361.803 kb on + strandat 4361.803 kb on + strandat 4361.803 kb on + strandat 4361.803 kb on + strandat 4361.804 kb on - strandat 4361.804 kb on - strandat 4361.804 kb on - strandat 4361.804 kb on - strandat 4361.804 kb on - strandat 4361.804 kb on - strandat 4361.804 kb on - strandat 4361.804 kb on - strandat 4361.804 kb on - strandat 4361.804 kb on - strandat 4361.804 kb on - strandat 4361.804 kb on - strandat 4361.804 kb on - strandat 4361.804 kb on - strandat 4361.804 kb on - strandat 4361.806 kb on - strandat 4361.839 kb on + strandat 4361.840 kb on - strandat 4361.967 kb on + strand, within Psest_4184at 4361.967 kb on + strand, within Psest_4184at 4361.967 kb on + strand, within Psest_4184at 4361.967 kb on + strand, within Psest_4184at 4361.967 kb on + strand, within Psest_4184at 4361.967 kb on + strand, within Psest_4184at 4361.967 kb on + strand, within Psest_4184at 4361.968 kb on - strand, within Psest_4184at 4361.968 kb on - strand, within Psest_4184at 4361.968 kb on - strand, within Psest_4184at 4362.159 kb on + strandat 4362.160 kb on - strandat 4362.237 kb on + strandat 4362.238 kb on - strandat 4362.268 kb on + strandat 4362.268 kb on + strandat 4362.268 kb on + strandat 4362.279 kb on + strandat 4362.279 kb on + strandat 4362.279 kb on + strandat 4362.279 kb on + strandat 4362.279 kb on + strandat 4362.279 kb on + strandat 4362.279 kb on + strandat 4362.279 kb on + strandat 4362.280 kb on - strandat 4362.366 kb on + strandat 4362.367 kb on - strandat 4362.367 kb on - strandat 4362.540 kb on + strand, within Psest_4185at 4362.541 kb on - strand, within Psest_4185at 4362.654 kb on + strand, within Psest_4185at 4362.708 kb on + strand, within Psest_4185at 4362.708 kb on + strand, within Psest_4185at 4362.709 kb on - strand, within Psest_4185at 4362.709 kb on - strand, within Psest_4185at 4362.709 kb on - strand, within Psest_4185at 4362.709 kb on - strand, within Psest_4185at 4362.709 kb on - strand, within Psest_4185

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.005 mg/ml
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4,360,517 - Psest_4182 0.60 -0.9
4,360,525 + Psest_4182 0.60 +1.6
4,360,525 + Psest_4182 0.60 -0.2
4,360,525 + Psest_4182 0.60 -0.2
4,360,525 + Psest_4182 0.60 +0.0
4,360,525 + Psest_4182 0.60 -0.9
4,360,525 + Psest_4182 0.60 +0.1
4,360,525 + Psest_4182 0.60 -1.8
4,360,525 + Psest_4182 0.60 -1.2
4,360,525 + Psest_4182 0.60 +1.3
4,360,525 + Psest_4182 0.60 +0.7
4,360,525 + Psest_4182 0.60 -1.4
4,360,525 + Psest_4182 0.60 +0.9
4,360,525 + Psest_4182 0.60 -0.4
4,360,525 + Psest_4182 0.60 -1.2
4,360,525 + Psest_4182 0.60 +3.3
4,360,525 + Psest_4182 0.60 +0.3
4,360,525 + Psest_4182 0.60 +1.3
4,360,526 - Psest_4182 0.60 -0.6
4,360,526 - Psest_4182 0.60 +1.1
4,360,526 - Psest_4182 0.60 +0.8
4,360,526 - Psest_4182 0.60 -1.3
4,360,526 - Psest_4182 0.60 +2.7
4,360,526 - Psest_4182 0.60 -2.6
4,360,526 - Psest_4182 0.60 -1.4
4,360,526 - Psest_4182 0.60 +1.0
4,360,526 - Psest_4182 0.60 +0.7
4,360,526 - Psest_4182 0.60 -0.2
4,360,526 - Psest_4182 0.60 +1.2
4,360,526 - Psest_4182 0.60 +1.8
4,360,526 - Psest_4182 0.60 -0.1
4,360,526 - Psest_4182 0.60 -1.9
4,360,526 - Psest_4182 0.60 -0.3
4,360,526 - Psest_4182 0.60 -1.0
4,360,526 - Psest_4182 0.60 +0.6
4,360,526 - Psest_4182 0.60 +1.3
4,360,600 + Psest_4182 0.64 +0.4
4,360,601 - Psest_4182 0.64 -0.4
4,360,601 - Psest_4182 0.64 +1.9
4,360,601 - Psest_4182 0.64 +0.5
4,360,861 + Psest_4182 0.76 -0.4
4,360,861 + Psest_4182 0.76 -1.4
4,360,861 + Psest_4182 0.76 +0.6
4,360,861 + Psest_4182 0.76 -0.9
4,360,861 + Psest_4182 0.76 +0.2
4,360,861 + Psest_4182 0.76 +1.4
4,360,862 - Psest_4182 0.76 -0.5
4,360,862 - Psest_4182 0.76 +0.9
4,360,862 - Psest_4182 0.76 +1.2
4,360,862 - Psest_4182 0.76 -0.9
4,360,862 - Psest_4182 0.76 -0.7
4,360,862 - Psest_4182 0.76 -0.8
4,360,862 - Psest_4182 0.76 +1.0
4,360,862 - Psest_4182 0.76 -0.3
4,360,862 - Psest_4182 0.76 +0.5
4,360,863 + Psest_4182 0.76 -0.9
4,360,864 - Psest_4182 0.76 +0.7
4,360,864 - Psest_4182 0.76 -0.6
4,360,882 + Psest_4182 0.77 +1.0
4,361,393 + +1.3
4,361,394 - +0.9
4,361,583 - Psest_4183 0.56 +1.3
4,361,651 + Psest_4183 0.76 +0.9
4,361,652 - Psest_4183 0.76 +0.3
4,361,652 - Psest_4183 0.76 +1.2
4,361,803 + +0.7
4,361,803 + +2.3
4,361,803 + -1.4
4,361,803 + -2.4
4,361,803 + -1.1
4,361,803 + +0.7
4,361,803 + -0.7
4,361,803 + -1.6
4,361,803 + +0.9
4,361,803 + +0.3
4,361,804 - -0.6
4,361,804 - +0.1
4,361,804 - -0.6
4,361,804 - -2.3
4,361,804 - -1.0
4,361,804 - -0.0
4,361,804 - +0.4
4,361,804 - -0.6
4,361,804 - +0.5
4,361,804 - -0.4
4,361,804 - +0.9
4,361,804 - +0.6
4,361,804 - -0.5
4,361,804 - +0.3
4,361,804 - +0.2
4,361,806 - -1.3
4,361,839 + +0.2
4,361,840 - +1.9
4,361,967 + Psest_4184 0.32 -0.6
4,361,967 + Psest_4184 0.32 -0.7
4,361,967 + Psest_4184 0.32 +1.5
4,361,967 + Psest_4184 0.32 -1.2
4,361,967 + Psest_4184 0.32 -0.4
4,361,967 + Psest_4184 0.32 +1.2
4,361,967 + Psest_4184 0.32 +0.1
4,361,968 - Psest_4184 0.33 -0.3
4,361,968 - Psest_4184 0.33 +2.0
4,361,968 - Psest_4184 0.33 -1.3
4,362,159 + -0.4
4,362,160 - -0.5
4,362,237 + +0.2
4,362,238 - +0.7
4,362,268 + +0.0
4,362,268 + -1.4
4,362,268 + +0.3
4,362,279 + +0.1
4,362,279 + -0.1
4,362,279 + +0.0
4,362,279 + -0.8
4,362,279 + -0.6
4,362,279 + -0.4
4,362,279 + -1.4
4,362,279 + -1.6
4,362,280 - +1.3
4,362,366 + -2.8
4,362,367 - +2.8
4,362,367 - -1.0
4,362,540 + Psest_4185 0.18 -1.0
4,362,541 - Psest_4185 0.18 -0.1
4,362,654 + Psest_4185 0.26 -0.1
4,362,708 + Psest_4185 0.29 +0.9
4,362,708 + Psest_4185 0.29 -0.5
4,362,709 - Psest_4185 0.29 +0.4
4,362,709 - Psest_4185 0.29 +0.6
4,362,709 - Psest_4185 0.29 +0.1
4,362,709 - Psest_4185 0.29 -0.3
4,362,709 - Psest_4185 0.29 +0.1

Or see this region's nucleotide sequence