Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3764 and Psest_3765 are separated by 10 nucleotides Psest_3765 and Psest_3766 overlap by 4 nucleotides Psest_3766 and Psest_3767 are separated by 66 nucleotides Psest_3767 and Psest_3768 overlap by 4 nucleotides
Psest_3764: Psest_3764 - diaminopimelate decarboxylase, at 3,931,923 to 3,933,170
_3764
Psest_3765: Psest_3765 - diaminopimelate epimerase, at 3,933,181 to 3,934,011
_3765
Psest_3766: Psest_3766 - Uncharacterized protein conserved in bacteria, at 3,934,008 to 3,934,700
_3766
Psest_3767: Psest_3767 - tyrosine recombinase XerC, at 3,934,767 to 3,935,666
_3767
Psest_3768: Psest_3768 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E, at 3,935,663 to 3,936,364
_3768
Position (kb)
3934
3935 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3934.194 kb on - strand, within Psest_3766 at 3934.360 kb on - strand, within Psest_3766 at 3934.477 kb on + strand, within Psest_3766 at 3934.602 kb on + strand, within Psest_3766 at 3934.602 kb on + strand, within Psest_3766 at 3934.603 kb on - strand, within Psest_3766 at 3934.635 kb on + strand at 3934.636 kb on - strand at 3934.788 kb on + strand at 3935.187 kb on + strand, within Psest_3767 at 3935.188 kb on - strand, within Psest_3767 at 3935.344 kb on + strand, within Psest_3767 at 3935.477 kb on + strand, within Psest_3767 at 3935.477 kb on + strand, within Psest_3767 at 3935.477 kb on + strand, within Psest_3767 at 3935.477 kb on + strand, within Psest_3767 at 3935.478 kb on - strand, within Psest_3767 at 3935.478 kb on - strand, within Psest_3767 at 3935.478 kb on - strand, within Psest_3767 at 3935.478 kb on - strand, within Psest_3767 at 3935.478 kb on - strand, within Psest_3767 at 3935.478 kb on - strand, within Psest_3767 at 3935.478 kb on - strand, within Psest_3767 at 3935.478 kb on - strand, within Psest_3767 at 3935.478 kb on - strand, within Psest_3767 at 3935.478 kb on - strand, within Psest_3767 at 3935.478 kb on - strand, within Psest_3767 at 3935.580 kb on + strand at 3935.580 kb on + strand at 3935.580 kb on + strand at 3935.581 kb on - strand at 3935.581 kb on - strand at 3935.581 kb on - strand at 3935.581 kb on - strand at 3935.581 kb on - strand at 3935.581 kb on - strand at 3935.616 kb on + strand at 3935.616 kb on + strand at 3935.698 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 3,934,194 - Psest_3766 0.27 +1.8 3,934,360 - Psest_3766 0.51 +2.1 3,934,477 + Psest_3766 0.68 +4.7 3,934,602 + Psest_3766 0.86 +3.5 3,934,602 + Psest_3766 0.86 +4.0 3,934,603 - Psest_3766 0.86 +1.0 3,934,635 + +2.9 3,934,636 - +2.5 3,934,788 + -1.1 3,935,187 + Psest_3767 0.47 -2.4 3,935,188 - Psest_3767 0.47 +0.3 3,935,344 + Psest_3767 0.64 +0.1 3,935,477 + Psest_3767 0.79 +0.7 3,935,477 + Psest_3767 0.79 -0.2 3,935,477 + Psest_3767 0.79 +0.1 3,935,477 + Psest_3767 0.79 +0.4 3,935,478 - Psest_3767 0.79 -1.2 3,935,478 - Psest_3767 0.79 +2.1 3,935,478 - Psest_3767 0.79 -0.5 3,935,478 - Psest_3767 0.79 +0.9 3,935,478 - Psest_3767 0.79 +0.7 3,935,478 - Psest_3767 0.79 +1.3 3,935,478 - Psest_3767 0.79 -0.1 3,935,478 - Psest_3767 0.79 -0.3 3,935,478 - Psest_3767 0.79 -1.1 3,935,478 - Psest_3767 0.79 -1.3 3,935,478 - Psest_3767 0.79 -1.1 3,935,580 + -0.8 3,935,580 + -1.5 3,935,580 + -2.6 3,935,581 - -0.6 3,935,581 - +0.9 3,935,581 - -0.9 3,935,581 - -0.3 3,935,581 - -0.9 3,935,581 - -0.3 3,935,616 + -0.7 3,935,616 + +2.8 3,935,698 + +1.9
Or see this region's nucleotide sequence