Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3114 and Psest_3115 are separated by 103 nucleotides Psest_3115 and Psest_3116 overlap by 4 nucleotides Psest_3116 and Psest_3117 overlap by 4 nucleotides
Psest_3114: Psest_3114 - electron transport complex, RnfABCDGE type, C subunit, at 3,290,502 to 3,293,180
_3114
Psest_3115: Psest_3115 - electron transport complex, RnfABCDGE type, D subunit, at 3,293,284 to 3,294,312
_3115
Psest_3116: Psest_3116 - electron transport complex, RnfABCDGE type, G subunit, at 3,294,309 to 3,295,088
_3116
Psest_3117: Psest_3117 - electron transport complex, RnfABCDGE type, E subunit, at 3,295,085 to 3,295,798
_3117
Position (kb)
3293
3294
3295 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 3293.000 kb on - strand at 3293.117 kb on - strand at 3293.166 kb on + strand at 3293.247 kb on - strand at 3293.665 kb on + strand, within Psest_3115 at 3293.807 kb on + strand, within Psest_3115 at 3293.807 kb on + strand, within Psest_3115 at 3293.807 kb on + strand, within Psest_3115 at 3293.807 kb on + strand, within Psest_3115 at 3293.807 kb on + strand, within Psest_3115 at 3293.807 kb on + strand, within Psest_3115 at 3293.808 kb on - strand, within Psest_3115 at 3293.808 kb on - strand, within Psest_3115 at 3293.808 kb on - strand, within Psest_3115 at 3293.808 kb on - strand, within Psest_3115 at 3293.808 kb on - strand, within Psest_3115 at 3293.984 kb on + strand, within Psest_3115 at 3293.984 kb on + strand, within Psest_3115 at 3293.984 kb on + strand, within Psest_3115 at 3293.984 kb on + strand, within Psest_3115 at 3293.985 kb on - strand, within Psest_3115 at 3293.985 kb on - strand, within Psest_3115 at 3293.985 kb on - strand, within Psest_3115 at 3293.985 kb on - strand, within Psest_3115 at 3293.985 kb on - strand, within Psest_3115 at 3294.154 kb on - strand, within Psest_3115 at 3294.163 kb on + strand, within Psest_3115 at 3294.163 kb on + strand, within Psest_3115 at 3294.163 kb on + strand, within Psest_3115 at 3294.163 kb on + strand, within Psest_3115 at 3294.163 kb on + strand, within Psest_3115 at 3294.163 kb on + strand, within Psest_3115 at 3294.163 kb on + strand, within Psest_3115 at 3294.163 kb on + strand, within Psest_3115 at 3294.164 kb on - strand, within Psest_3115 at 3294.164 kb on - strand, within Psest_3115 at 3294.164 kb on - strand, within Psest_3115 at 3294.164 kb on - strand, within Psest_3115 at 3294.164 kb on - strand, within Psest_3115 at 3294.164 kb on - strand, within Psest_3115 at 3294.247 kb on + strand at 3294.250 kb on + strand at 3294.250 kb on + strand at 3294.250 kb on + strand at 3294.251 kb on - strand at 3294.251 kb on - strand at 3294.251 kb on - strand at 3294.251 kb on - strand at 3294.251 kb on - strand at 3294.251 kb on - strand at 3294.268 kb on + strand at 3294.268 kb on + strand at 3294.268 kb on + strand at 3294.428 kb on + strand, within Psest_3116 at 3294.428 kb on + strand, within Psest_3116 at 3294.458 kb on - strand, within Psest_3116 at 3294.492 kb on + strand, within Psest_3116 at 3294.492 kb on + strand, within Psest_3116 at 3294.492 kb on + strand, within Psest_3116 at 3294.492 kb on + strand, within Psest_3116 at 3294.493 kb on - strand, within Psest_3116 at 3294.493 kb on - strand, within Psest_3116 at 3294.493 kb on - strand, within Psest_3116 at 3294.493 kb on - strand, within Psest_3116 at 3294.567 kb on + strand, within Psest_3116 at 3294.567 kb on + strand, within Psest_3116 at 3294.567 kb on + strand, within Psest_3116 at 3294.567 kb on + strand, within Psest_3116 at 3294.567 kb on + strand, within Psest_3116 at 3294.567 kb on + strand, within Psest_3116 at 3294.567 kb on + strand, within Psest_3116 at 3294.567 kb on + strand, within Psest_3116 at 3294.567 kb on + strand, within Psest_3116 at 3294.568 kb on - strand, within Psest_3116 at 3294.568 kb on - strand, within Psest_3116 at 3294.568 kb on - strand, within Psest_3116 at 3294.568 kb on - strand, within Psest_3116 at 3294.568 kb on - strand, within Psest_3116 at 3294.568 kb on - strand, within Psest_3116 at 3294.568 kb on - strand, within Psest_3116 at 3294.631 kb on - strand, within Psest_3116 at 3294.900 kb on + strand, within Psest_3116 at 3294.900 kb on + strand, within Psest_3116 at 3294.901 kb on - strand, within Psest_3116
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 3,293,000 - +0.4 3,293,117 - +1.8 3,293,166 + -1.5 3,293,247 - +2.2 3,293,665 + Psest_3115 0.37 +0.5 3,293,807 + Psest_3115 0.51 +1.6 3,293,807 + Psest_3115 0.51 +0.8 3,293,807 + Psest_3115 0.51 +0.6 3,293,807 + Psest_3115 0.51 -0.8 3,293,807 + Psest_3115 0.51 +0.9 3,293,807 + Psest_3115 0.51 -0.1 3,293,808 - Psest_3115 0.51 +2.1 3,293,808 - Psest_3115 0.51 +0.5 3,293,808 - Psest_3115 0.51 +0.1 3,293,808 - Psest_3115 0.51 +0.3 3,293,808 - Psest_3115 0.51 -0.9 3,293,984 + Psest_3115 0.68 +2.7 3,293,984 + Psest_3115 0.68 +0.0 3,293,984 + Psest_3115 0.68 +0.8 3,293,984 + Psest_3115 0.68 +3.1 3,293,985 - Psest_3115 0.68 +0.2 3,293,985 - Psest_3115 0.68 +3.1 3,293,985 - Psest_3115 0.68 +1.1 3,293,985 - Psest_3115 0.68 +1.5 3,293,985 - Psest_3115 0.68 +0.9 3,294,154 - Psest_3115 0.85 +1.5 3,294,163 + Psest_3115 0.85 +0.2 3,294,163 + Psest_3115 0.85 +0.3 3,294,163 + Psest_3115 0.85 +0.5 3,294,163 + Psest_3115 0.85 +0.2 3,294,163 + Psest_3115 0.85 +0.1 3,294,163 + Psest_3115 0.85 +4.3 3,294,163 + Psest_3115 0.85 +1.6 3,294,163 + Psest_3115 0.85 +1.7 3,294,164 - Psest_3115 0.86 +1.6 3,294,164 - Psest_3115 0.86 +0.2 3,294,164 - Psest_3115 0.86 +0.5 3,294,164 - Psest_3115 0.86 +1.2 3,294,164 - Psest_3115 0.86 +0.5 3,294,164 - Psest_3115 0.86 -0.1 3,294,247 + +0.5 3,294,250 + +0.5 3,294,250 + -1.0 3,294,250 + +1.0 3,294,251 - +0.4 3,294,251 - +0.1 3,294,251 - +1.7 3,294,251 - -1.1 3,294,251 - +1.9 3,294,251 - -0.7 3,294,268 + +1.3 3,294,268 + +0.4 3,294,268 + +0.7 3,294,428 + Psest_3116 0.15 -0.0 3,294,428 + Psest_3116 0.15 +2.5 3,294,458 - Psest_3116 0.19 +2.7 3,294,492 + Psest_3116 0.23 +3.6 3,294,492 + Psest_3116 0.23 +0.7 3,294,492 + Psest_3116 0.23 +1.0 3,294,492 + Psest_3116 0.23 +0.4 3,294,493 - Psest_3116 0.24 -0.6 3,294,493 - Psest_3116 0.24 +1.2 3,294,493 - Psest_3116 0.24 -0.8 3,294,493 - Psest_3116 0.24 +0.4 3,294,567 + Psest_3116 0.33 +0.5 3,294,567 + Psest_3116 0.33 -0.7 3,294,567 + Psest_3116 0.33 -0.2 3,294,567 + Psest_3116 0.33 +2.4 3,294,567 + Psest_3116 0.33 +1.2 3,294,567 + Psest_3116 0.33 +1.3 3,294,567 + Psest_3116 0.33 +1.2 3,294,567 + Psest_3116 0.33 +0.7 3,294,567 + Psest_3116 0.33 +0.2 3,294,568 - Psest_3116 0.33 +1.5 3,294,568 - Psest_3116 0.33 +0.7 3,294,568 - Psest_3116 0.33 -0.5 3,294,568 - Psest_3116 0.33 -0.5 3,294,568 - Psest_3116 0.33 +1.2 3,294,568 - Psest_3116 0.33 +3.4 3,294,568 - Psest_3116 0.33 +0.5 3,294,631 - Psest_3116 0.41 -0.5 3,294,900 + Psest_3116 0.76 -0.3 3,294,900 + Psest_3116 0.76 +0.8 3,294,901 - Psest_3116 0.76 +1.5
Or see this region's nucleotide sequence