Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3025 and Psest_3026 overlap by 4 nucleotides Psest_3026 and Psest_3027 are separated by 328 nucleotides Psest_3027 and Psest_3028 are separated by 78 nucleotides Psest_3028 and Psest_3029 are separated by 58 nucleotides
Psest_3025: Psest_3025 - Cytochrome bd-type quinol oxidase, subunit 1, at 3,211,952 to 3,213,592
_3025
Psest_3026: Psest_3026 - hypothetical protein, at 3,213,589 to 3,213,768
_3026
Psest_3027: Psest_3027 - AZL_007950 family protein, at 3,214,097 to 3,214,681
_3027
Psest_3028: Psest_3028 - Protein of unknown function (DUF2946)., at 3,214,760 to 3,215,125
_3028
Psest_3029: Psest_3029 - 3-methyladenine DNA glycosylase, at 3,215,184 to 3,215,855
_3029
Position (kb)
3214
3215 Strain fitness (log2 ratio)
-2
-1
0
1 at 3213.327 kb on + strand, within Psest_3025 at 3213.337 kb on - strand, within Psest_3025 at 3213.337 kb on - strand, within Psest_3025 at 3213.337 kb on - strand, within Psest_3025 at 3213.337 kb on - strand, within Psest_3025 at 3213.339 kb on + strand, within Psest_3025 at 3213.339 kb on + strand, within Psest_3025 at 3213.443 kb on - strand at 3213.444 kb on + strand at 3213.444 kb on + strand at 3213.444 kb on + strand at 3213.444 kb on + strand at 3213.445 kb on - strand at 3213.445 kb on - strand at 3213.445 kb on - strand at 3213.468 kb on + strand at 3213.468 kb on + strand at 3213.468 kb on + strand at 3213.468 kb on + strand at 3213.468 kb on + strand at 3213.468 kb on + strand at 3213.469 kb on - strand at 3213.469 kb on - strand at 3213.469 kb on - strand at 3213.469 kb on - strand at 3213.534 kb on + strand at 3213.535 kb on - strand at 3213.535 kb on - strand at 3213.535 kb on - strand at 3213.535 kb on - strand at 3213.572 kb on + strand at 3213.572 kb on + strand at 3213.572 kb on + strand at 3213.572 kb on + strand at 3213.572 kb on + strand at 3213.572 kb on + strand at 3213.625 kb on - strand, within Psest_3026 at 3213.772 kb on + strand at 3213.773 kb on - strand at 3214.029 kb on + strand at 3214.029 kb on + strand at 3214.029 kb on + strand at 3214.030 kb on - strand at 3214.277 kb on + strand, within Psest_3027 at 3214.277 kb on + strand, within Psest_3027 at 3214.277 kb on + strand, within Psest_3027 at 3214.278 kb on - strand, within Psest_3027 at 3214.283 kb on + strand, within Psest_3027 at 3214.284 kb on - strand, within Psest_3027 at 3214.441 kb on - strand, within Psest_3027 at 3214.534 kb on - strand, within Psest_3027 at 3214.976 kb on - strand, within Psest_3028 at 3215.090 kb on + strand at 3215.090 kb on + strand at 3215.091 kb on - strand at 3215.091 kb on - strand at 3215.091 kb on - strand at 3215.136 kb on + strand at 3215.137 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 3,213,327 + Psest_3025 0.84 +1.0 3,213,337 - Psest_3025 0.84 +0.2 3,213,337 - Psest_3025 0.84 +0.7 3,213,337 - Psest_3025 0.84 +1.2 3,213,337 - Psest_3025 0.84 -0.7 3,213,339 + Psest_3025 0.85 +0.2 3,213,339 + Psest_3025 0.85 +0.4 3,213,443 - +0.7 3,213,444 + +0.2 3,213,444 + -0.1 3,213,444 + +0.1 3,213,444 + +1.3 3,213,445 - -1.5 3,213,445 - -0.4 3,213,445 - -0.8 3,213,468 + +0.0 3,213,468 + +0.7 3,213,468 + +1.2 3,213,468 + +0.2 3,213,468 + -0.8 3,213,468 + -0.3 3,213,469 - -1.3 3,213,469 - +0.7 3,213,469 - -0.0 3,213,469 - +0.9 3,213,534 + -0.5 3,213,535 - +0.0 3,213,535 - +1.6 3,213,535 - +1.2 3,213,535 - -2.5 3,213,572 + +1.6 3,213,572 + -1.1 3,213,572 + +1.0 3,213,572 + +1.1 3,213,572 + -1.2 3,213,572 + -0.6 3,213,625 - Psest_3026 0.20 -0.3 3,213,772 + -0.0 3,213,773 - +0.9 3,214,029 + -0.4 3,214,029 + -1.3 3,214,029 + -1.2 3,214,030 - +1.1 3,214,277 + Psest_3027 0.31 -0.6 3,214,277 + Psest_3027 0.31 -2.5 3,214,277 + Psest_3027 0.31 -1.0 3,214,278 - Psest_3027 0.31 +0.4 3,214,283 + Psest_3027 0.32 -0.3 3,214,284 - Psest_3027 0.32 -0.9 3,214,441 - Psest_3027 0.59 +0.0 3,214,534 - Psest_3027 0.75 -0.3 3,214,976 - Psest_3028 0.59 -0.4 3,215,090 + -0.7 3,215,090 + +0.6 3,215,091 - +0.2 3,215,091 - +1.4 3,215,091 - +1.3 3,215,136 + -0.1 3,215,137 - -1.9
Or see this region's nucleotide sequence