Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0203

Experiment: A22 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0202 and Psest_0203 overlap by 20 nucleotidesPsest_0203 and Psest_0204 overlap by 8 nucleotidesPsest_0204 and Psest_0205 are separated by 182 nucleotides Psest_0202: Psest_0202 - diguanylate cyclase (GGDEF) domain, at 200,892 to 202,823 _0202 Psest_0203: Psest_0203 - Signal transduction histidine kinase, at 202,804 to 204,204 _0203 Psest_0204: Psest_0204 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 204,197 to 204,868 _0204 Psest_0205: Psest_0205 - tricarboxylate porin (from data), at 205,051 to 206,313 _0205 Position (kb) 202 203 204 205Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 202.209 kb on + strand, within Psest_0202at 202.209 kb on + strand, within Psest_0202at 202.348 kb on + strand, within Psest_0202at 202.728 kb on + strandat 202.728 kb on + strandat 202.728 kb on + strandat 202.728 kb on + strandat 202.729 kb on - strandat 202.729 kb on - strandat 202.953 kb on - strand, within Psest_0203at 202.953 kb on - strand, within Psest_0203at 203.068 kb on - strand, within Psest_0203at 203.831 kb on + strand, within Psest_0203at 203.831 kb on + strand, within Psest_0203at 203.831 kb on + strand, within Psest_0203at 203.831 kb on + strand, within Psest_0203at 203.831 kb on + strand, within Psest_0203at 203.832 kb on - strand, within Psest_0203at 203.832 kb on - strand, within Psest_0203at 203.832 kb on - strand, within Psest_0203at 203.832 kb on - strand, within Psest_0203at 203.939 kb on + strand, within Psest_0203at 203.939 kb on + strand, within Psest_0203at 203.940 kb on - strand, within Psest_0203at 203.942 kb on + strand, within Psest_0203at 203.942 kb on + strand, within Psest_0203at 203.942 kb on + strand, within Psest_0203at 203.942 kb on + strand, within Psest_0203at 203.942 kb on + strand, within Psest_0203at 203.942 kb on + strand, within Psest_0203at 203.942 kb on + strand, within Psest_0203at 203.942 kb on + strand, within Psest_0203at 203.943 kb on - strand, within Psest_0203at 203.943 kb on - strand, within Psest_0203at 203.943 kb on - strand, within Psest_0203at 203.943 kb on - strand, within Psest_0203at 203.943 kb on - strand, within Psest_0203at 203.943 kb on - strand, within Psest_0203at 203.943 kb on - strand, within Psest_0203at 203.943 kb on - strand, within Psest_0203at 203.943 kb on - strand, within Psest_0203at 203.943 kb on - strand, within Psest_0203at 203.943 kb on - strand, within Psest_0203at 203.987 kb on + strand, within Psest_0203at 203.987 kb on + strand, within Psest_0203at 203.988 kb on - strand, within Psest_0203at 204.059 kb on - strand, within Psest_0203at 204.223 kb on - strandat 204.242 kb on - strandat 204.291 kb on + strand, within Psest_0204at 204.291 kb on + strand, within Psest_0204at 204.291 kb on + strand, within Psest_0204at 204.291 kb on + strand, within Psest_0204at 204.291 kb on + strand, within Psest_0204at 204.291 kb on + strand, within Psest_0204at 204.291 kb on + strand, within Psest_0204at 204.291 kb on + strand, within Psest_0204at 204.292 kb on - strand, within Psest_0204at 204.292 kb on - strand, within Psest_0204at 204.292 kb on - strand, within Psest_0204at 204.292 kb on - strand, within Psest_0204at 204.292 kb on - strand, within Psest_0204at 204.292 kb on - strand, within Psest_0204at 204.292 kb on - strand, within Psest_0204at 204.292 kb on - strand, within Psest_0204at 204.292 kb on - strand, within Psest_0204at 204.292 kb on - strand, within Psest_0204at 204.336 kb on - strand, within Psest_0204at 204.468 kb on + strand, within Psest_0204at 204.468 kb on + strand, within Psest_0204at 204.469 kb on - strand, within Psest_0204at 204.469 kb on - strand, within Psest_0204at 204.469 kb on - strand, within Psest_0204at 204.577 kb on - strand, within Psest_0204at 204.736 kb on - strand, within Psest_0204at 204.970 kb on + strandat 204.970 kb on + strandat 205.036 kb on - strandat 205.183 kb on + strand, within Psest_0205at 205.183 kb on + strand, within Psest_0205at 205.183 kb on + strand, within Psest_0205at 205.184 kb on - strand, within Psest_0205at 205.184 kb on - strand, within Psest_0205

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.005 mg/ml
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202,209 + Psest_0202 0.68 +1.0
202,209 + Psest_0202 0.68 +0.6
202,348 + Psest_0202 0.75 -0.8
202,728 + -1.0
202,728 + -1.6
202,728 + +1.3
202,728 + +0.5
202,729 - +0.3
202,729 - -0.6
202,953 - Psest_0203 0.11 -2.5
202,953 - Psest_0203 0.11 +0.7
203,068 - Psest_0203 0.19 -0.9
203,831 + Psest_0203 0.73 +0.1
203,831 + Psest_0203 0.73 +1.7
203,831 + Psest_0203 0.73 +2.0
203,831 + Psest_0203 0.73 -0.2
203,831 + Psest_0203 0.73 -1.2
203,832 - Psest_0203 0.73 +0.1
203,832 - Psest_0203 0.73 +1.6
203,832 - Psest_0203 0.73 -0.9
203,832 - Psest_0203 0.73 +0.7
203,939 + Psest_0203 0.81 +0.5
203,939 + Psest_0203 0.81 -1.4
203,940 - Psest_0203 0.81 -0.9
203,942 + Psest_0203 0.81 +0.3
203,942 + Psest_0203 0.81 -0.6
203,942 + Psest_0203 0.81 +0.5
203,942 + Psest_0203 0.81 +0.3
203,942 + Psest_0203 0.81 +3.0
203,942 + Psest_0203 0.81 +0.5
203,942 + Psest_0203 0.81 +1.7
203,942 + Psest_0203 0.81 +1.6
203,943 - Psest_0203 0.81 +0.4
203,943 - Psest_0203 0.81 +0.8
203,943 - Psest_0203 0.81 +0.3
203,943 - Psest_0203 0.81 -1.1
203,943 - Psest_0203 0.81 -1.1
203,943 - Psest_0203 0.81 +1.1
203,943 - Psest_0203 0.81 +1.4
203,943 - Psest_0203 0.81 +0.2
203,943 - Psest_0203 0.81 -1.2
203,943 - Psest_0203 0.81 -1.1
203,943 - Psest_0203 0.81 -0.1
203,987 + Psest_0203 0.84 +0.8
203,987 + Psest_0203 0.84 -0.2
203,988 - Psest_0203 0.85 +4.5
204,059 - Psest_0203 0.90 -0.1
204,223 - -0.1
204,242 - -0.6
204,291 + Psest_0204 0.14 -0.0
204,291 + Psest_0204 0.14 -0.0
204,291 + Psest_0204 0.14 -0.5
204,291 + Psest_0204 0.14 -0.5
204,291 + Psest_0204 0.14 +0.7
204,291 + Psest_0204 0.14 -1.4
204,291 + Psest_0204 0.14 -0.9
204,291 + Psest_0204 0.14 -0.2
204,292 - Psest_0204 0.14 +0.3
204,292 - Psest_0204 0.14 -0.2
204,292 - Psest_0204 0.14 -0.8
204,292 - Psest_0204 0.14 -1.6
204,292 - Psest_0204 0.14 +0.9
204,292 - Psest_0204 0.14 -0.5
204,292 - Psest_0204 0.14 -0.4
204,292 - Psest_0204 0.14 +0.7
204,292 - Psest_0204 0.14 -1.5
204,292 - Psest_0204 0.14 -0.4
204,336 - Psest_0204 0.21 +0.3
204,468 + Psest_0204 0.40 +1.3
204,468 + Psest_0204 0.40 +0.8
204,469 - Psest_0204 0.40 +0.6
204,469 - Psest_0204 0.40 +0.1
204,469 - Psest_0204 0.40 -0.0
204,577 - Psest_0204 0.57 -0.3
204,736 - Psest_0204 0.80 -0.3
204,970 + -1.1
204,970 + -0.0
205,036 - +0.5
205,183 + Psest_0205 0.10 +0.5
205,183 + Psest_0205 0.10 +0.1
205,183 + Psest_0205 0.10 -0.0
205,184 - Psest_0205 0.11 +0.2
205,184 - Psest_0205 0.11 +2.3

Or see this region's nucleotide sequence