Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1659

Experiment: A22 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1657 and Psest_1658 are separated by 2 nucleotidesPsest_1658 and Psest_1659 overlap by 1 nucleotidesPsest_1659 and Psest_1660 are separated by 15 nucleotides Psest_1657: Psest_1657 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit, at 1,767,417 to 1,768,211 _1657 Psest_1658: Psest_1658 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit, at 1,768,214 to 1,768,882 _1658 Psest_1659: Psest_1659 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit, at 1,768,882 to 1,769,490 _1659 Psest_1660: Psest_1660 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit, at 1,769,506 to 1,770,729 _1660 Position (kb) 1768 1769 1770Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1768.187 kb on + strandat 1768.487 kb on + strand, within Psest_1658at 1768.716 kb on + strand, within Psest_1658at 1768.891 kb on + strandat 1769.059 kb on + strand, within Psest_1659at 1769.060 kb on - strand, within Psest_1659at 1769.065 kb on + strand, within Psest_1659at 1769.140 kb on + strand, within Psest_1659at 1769.140 kb on + strand, within Psest_1659at 1769.194 kb on + strand, within Psest_1659at 1769.209 kb on + strand, within Psest_1659at 1769.293 kb on + strand, within Psest_1659at 1769.317 kb on + strand, within Psest_1659at 1769.389 kb on + strand, within Psest_1659at 1769.389 kb on + strand, within Psest_1659at 1769.389 kb on + strand, within Psest_1659at 1769.389 kb on + strand, within Psest_1659at 1769.389 kb on + strand, within Psest_1659at 1769.480 kb on + strandat 1769.488 kb on + strandat 1770.064 kb on + strand, within Psest_1660at 1770.100 kb on + strand, within Psest_1660at 1770.244 kb on + strand, within Psest_1660at 1770.457 kb on + strand, within Psest_1660at 1770.469 kb on + strand, within Psest_1660at 1770.469 kb on + strand, within Psest_1660

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.005 mg/ml
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1,768,187 + -0.3
1,768,487 + Psest_1658 0.41 +1.3
1,768,716 + Psest_1658 0.75 +1.3
1,768,891 + -1.5
1,769,059 + Psest_1659 0.29 +0.3
1,769,060 - Psest_1659 0.29 -0.0
1,769,065 + Psest_1659 0.30 -1.3
1,769,140 + Psest_1659 0.42 -0.3
1,769,140 + Psest_1659 0.42 +2.9
1,769,194 + Psest_1659 0.51 +2.3
1,769,209 + Psest_1659 0.54 -2.0
1,769,293 + Psest_1659 0.67 +0.3
1,769,317 + Psest_1659 0.71 +0.3
1,769,389 + Psest_1659 0.83 -0.0
1,769,389 + Psest_1659 0.83 -0.0
1,769,389 + Psest_1659 0.83 +1.3
1,769,389 + Psest_1659 0.83 +2.3
1,769,389 + Psest_1659 0.83 +0.1
1,769,480 + -1.3
1,769,488 + -0.7
1,770,064 + Psest_1660 0.46 +0.5
1,770,100 + Psest_1660 0.49 -0.0
1,770,244 + Psest_1660 0.60 +1.5
1,770,457 + Psest_1660 0.78 +0.6
1,770,469 + Psest_1660 0.79 -1.5
1,770,469 + Psest_1660 0.79 +0.1

Or see this region's nucleotide sequence