Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1165 and Psest_1166 are separated by 93 nucleotides Psest_1166 and Psest_1167 are separated by 5 nucleotides Psest_1167 and Psest_1168 are separated by 358 nucleotides
Psest_1165: Psest_1165 - Lysine efflux permease, at 1,266,801 to 1,267,409
_1165
Psest_1166: Psest_1166 - transcriptional regulator, ArgP family, at 1,267,503 to 1,268,393
_1166
Psest_1167: Psest_1167 - hypothetical protein, at 1,268,399 to 1,268,668
_1167
Psest_1168: Psest_1168 - hypothetical protein, at 1,269,027 to 1,269,953
_1168
Position (kb)
1268
1269 Strain fitness (log2 ratio)
-2
-1
0
1 at 1267.461 kb on - strand at 1267.476 kb on + strand at 1267.486 kb on + strand at 1267.493 kb on - strand at 1267.512 kb on + strand at 1267.513 kb on - strand at 1267.600 kb on + strand, within Psest_1166 at 1268.115 kb on + strand, within Psest_1166 at 1268.302 kb on - strand, within Psest_1166 at 1268.319 kb on - strand at 1268.424 kb on + strand at 1268.424 kb on + strand at 1268.438 kb on - strand, within Psest_1167 at 1268.720 kb on + strand at 1268.740 kb on - strand at 1268.740 kb on - strand at 1268.822 kb on + strand at 1268.822 kb on + strand at 1268.823 kb on - strand at 1268.984 kb on - strand at 1268.985 kb on + strand at 1268.985 kb on + strand at 1269.060 kb on - strand at 1269.300 kb on + strand, within Psest_1168
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 1,267,461 - -0.1 1,267,476 + -1.4 1,267,486 + -0.7 1,267,493 - +0.2 1,267,512 + -1.2 1,267,513 - +0.7 1,267,600 + Psest_1166 0.11 -0.5 1,268,115 + Psest_1166 0.69 +1.4 1,268,302 - Psest_1166 0.90 +1.5 1,268,319 - -0.8 1,268,424 + -1.5 1,268,424 + +0.5 1,268,438 - Psest_1167 0.14 -1.7 1,268,720 + -0.2 1,268,740 - +1.4 1,268,740 - -2.5 1,268,822 + +0.3 1,268,822 + -1.5 1,268,823 - +0.7 1,268,984 - -2.1 1,268,985 + +0.3 1,268,985 + -0.8 1,269,060 - -0.0 1,269,300 + Psest_1168 0.29 -0.2
Or see this region's nucleotide sequence