Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1117

Experiment: A22 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1115 and Psest_1116 overlap by 8 nucleotidesPsest_1116 and Psest_1117 are separated by 84 nucleotidesPsest_1117 and Psest_1118 are separated by 57 nucleotidesPsest_1118 and Psest_1119 are separated by 83 nucleotides Psest_1115: Psest_1115 - Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2, at 1,209,789 to 1,210,538 _1115 Psest_1116: Psest_1116 - glutamate racemase, at 1,210,531 to 1,211,325 _1116 Psest_1117: Psest_1117 - Lipid A 3-O-deacylase (PagL)., at 1,211,410 to 1,211,928 _1117 Psest_1118: Psest_1118 - Predicted Fe-S-cluster oxidoreductase, at 1,211,986 to 1,212,297 _1118 Psest_1119: Psest_1119 - uracil-xanthine permease, at 1,212,381 to 1,213,640 _1119 Position (kb) 1211 1212Strain fitness (log2 ratio) -2 -1 0 1 2at 1211.395 kb on + strandat 1211.395 kb on + strandat 1211.397 kb on + strandat 1211.397 kb on + strandat 1211.397 kb on + strandat 1211.398 kb on - strandat 1211.398 kb on - strandat 1211.617 kb on + strand, within Psest_1117at 1211.618 kb on - strand, within Psest_1117at 1211.677 kb on + strand, within Psest_1117at 1211.677 kb on + strand, within Psest_1117at 1211.678 kb on - strand, within Psest_1117at 1211.707 kb on + strand, within Psest_1117at 1211.707 kb on + strand, within Psest_1117at 1211.707 kb on + strand, within Psest_1117at 1211.745 kb on + strand, within Psest_1117at 1211.855 kb on - strand, within Psest_1117at 1211.926 kb on + strandat 1211.926 kb on + strandat 1211.926 kb on + strandat 1212.077 kb on + strand, within Psest_1118at 1212.078 kb on - strand, within Psest_1118at 1212.078 kb on - strand, within Psest_1118at 1212.315 kb on + strandat 1212.315 kb on + strandat 1212.378 kb on + strandat 1212.378 kb on + strandat 1212.379 kb on - strandat 1212.379 kb on - strandat 1212.379 kb on - strandat 1212.379 kb on - strandat 1212.379 kb on - strandat 1212.379 kb on - strandat 1212.379 kb on - strandat 1212.745 kb on + strand, within Psest_1119at 1212.745 kb on + strand, within Psest_1119at 1212.745 kb on + strand, within Psest_1119at 1212.745 kb on + strand, within Psest_1119at 1212.746 kb on - strand, within Psest_1119at 1212.746 kb on - strand, within Psest_1119at 1212.746 kb on - strand, within Psest_1119at 1212.746 kb on - strand, within Psest_1119at 1212.746 kb on - strand, within Psest_1119at 1212.746 kb on - strand, within Psest_1119at 1212.746 kb on - strand, within Psest_1119at 1212.877 kb on + strand, within Psest_1119at 1212.877 kb on + strand, within Psest_1119at 1212.877 kb on + strand, within Psest_1119at 1212.877 kb on + strand, within Psest_1119at 1212.878 kb on - strand, within Psest_1119at 1212.878 kb on - strand, within Psest_1119at 1212.878 kb on - strand, within Psest_1119at 1212.878 kb on - strand, within Psest_1119at 1212.878 kb on - strand, within Psest_1119

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.005 mg/ml
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1,211,395 + +1.2
1,211,395 + -1.1
1,211,397 + -1.8
1,211,397 + -0.2
1,211,397 + +0.5
1,211,398 - +1.0
1,211,398 - +0.3
1,211,617 + Psest_1117 0.40 -1.8
1,211,618 - Psest_1117 0.40 +0.4
1,211,677 + Psest_1117 0.51 -2.6
1,211,677 + Psest_1117 0.51 +0.3
1,211,678 - Psest_1117 0.52 -1.0
1,211,707 + Psest_1117 0.57 +0.1
1,211,707 + Psest_1117 0.57 -1.9
1,211,707 + Psest_1117 0.57 +0.1
1,211,745 + Psest_1117 0.65 -1.7
1,211,855 - Psest_1117 0.86 -0.7
1,211,926 + +2.2
1,211,926 + +0.3
1,211,926 + -0.4
1,212,077 + Psest_1118 0.29 +0.5
1,212,078 - Psest_1118 0.29 -0.9
1,212,078 - Psest_1118 0.29 -2.7
1,212,315 + +0.3
1,212,315 + -0.1
1,212,378 + -0.0
1,212,378 + +0.7
1,212,379 - +0.8
1,212,379 - -1.0
1,212,379 - +1.4
1,212,379 - -0.8
1,212,379 - +1.2
1,212,379 - -1.9
1,212,379 - +0.5
1,212,745 + Psest_1119 0.29 -0.5
1,212,745 + Psest_1119 0.29 -0.2
1,212,745 + Psest_1119 0.29 -2.3
1,212,745 + Psest_1119 0.29 -2.6
1,212,746 - Psest_1119 0.29 +0.5
1,212,746 - Psest_1119 0.29 -1.1
1,212,746 - Psest_1119 0.29 -0.3
1,212,746 - Psest_1119 0.29 -0.5
1,212,746 - Psest_1119 0.29 +0.0
1,212,746 - Psest_1119 0.29 +1.7
1,212,746 - Psest_1119 0.29 +1.1
1,212,877 + Psest_1119 0.39 -2.5
1,212,877 + Psest_1119 0.39 +0.2
1,212,877 + Psest_1119 0.39 +0.1
1,212,877 + Psest_1119 0.39 -2.1
1,212,878 - Psest_1119 0.39 -0.8
1,212,878 - Psest_1119 0.39 +0.4
1,212,878 - Psest_1119 0.39 -0.2
1,212,878 - Psest_1119 0.39 -0.3
1,212,878 - Psest_1119 0.39 -0.1

Or see this region's nucleotide sequence