Experiment: A22 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0084 and Psest_0085 are separated by 134 nucleotides Psest_0085 and Psest_0086 are separated by 354 nucleotides Psest_0086 and Psest_0087 are separated by 71 nucleotides
Psest_0084: Psest_0084 - alpha-ketoglutarate TRAP transporter, 4TM/12TM components <small>(from data)</small>, at 85,079 to 87,103
_0084
Psest_0085: Psest_0085 - alpha-ketoglutarate TRAP transporter, solute receptor component <small>(from data)</small>, at 87,238 to 88,191
_0085
Psest_0086: Psest_0086 - hypothetical protein, at 88,546 to 88,971
_0086
Psest_0087: Psest_0087 - hypothetical protein, at 89,043 to 89,285
_0087
Position (kb) 87
88
89 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 86.565 kb on + strand, within Psest_0084 at 86.565 kb on + strand, within Psest_0084 at 86.565 kb on + strand, within Psest_0084 at 86.565 kb on + strand, within Psest_0084 at 86.565 kb on + strand, within Psest_0084 at 86.565 kb on + strand, within Psest_0084 at 86.565 kb on + strand, within Psest_0084 at 86.565 kb on + strand, within Psest_0084 at 86.565 kb on + strand, within Psest_0084 at 86.565 kb on + strand, within Psest_0084 at 86.565 kb on + strand, within Psest_0084 at 86.565 kb on + strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.580 kb on + strand, within Psest_0084 at 86.580 kb on + strand, within Psest_0084 at 86.581 kb on - strand, within Psest_0084 at 86.581 kb on - strand, within Psest_0084 at 86.581 kb on - strand, within Psest_0084 at 86.581 kb on - strand, within Psest_0084 at 86.595 kb on + strand, within Psest_0084 at 86.618 kb on + strand, within Psest_0084 at 86.643 kb on + strand, within Psest_0084 at 86.643 kb on + strand, within Psest_0084 at 86.643 kb on + strand, within Psest_0084 at 86.644 kb on - strand, within Psest_0084 at 86.644 kb on - strand, within Psest_0084 at 86.644 kb on - strand, within Psest_0084 at 86.644 kb on - strand, within Psest_0084 at 86.646 kb on + strand, within Psest_0084 at 86.646 kb on + strand, within Psest_0084 at 86.676 kb on + strand, within Psest_0084 at 86.677 kb on - strand, within Psest_0084 at 86.841 kb on + strand at 86.841 kb on + strand, within Psest_0084 at 86.841 kb on + strand, within Psest_0084 at 86.841 kb on + strand, within Psest_0084 at 86.841 kb on + strand, within Psest_0084 at 86.842 kb on - strand, within Psest_0084 at 86.842 kb on - strand, within Psest_0084 at 86.842 kb on - strand, within Psest_0084 at 87.021 kb on + strand at 87.022 kb on - strand at 87.045 kb on + strand at 87.046 kb on - strand at 87.046 kb on - strand at 87.046 kb on - strand at 87.046 kb on - strand at 87.046 kb on - strand at 87.046 kb on - strand at 87.046 kb on - strand at 87.046 kb on - strand at 87.046 kb on - strand at 87.137 kb on + strand at 87.137 kb on + strand at 87.137 kb on + strand at 87.137 kb on + strand at 87.137 kb on + strand at 87.138 kb on - strand at 87.181 kb on + strand at 87.181 kb on + strand at 87.182 kb on - strand at 87.239 kb on + strand at 87.239 kb on + strand at 87.263 kb on + strand at 87.263 kb on + strand at 87.263 kb on + strand at 87.263 kb on + strand at 87.263 kb on + strand at 87.263 kb on + strand at 87.263 kb on + strand at 87.263 kb on + strand at 87.264 kb on - strand at 87.264 kb on - strand at 87.396 kb on - strand, within Psest_0085 at 87.479 kb on + strand, within Psest_0085 at 87.479 kb on + strand, within Psest_0085 at 87.479 kb on + strand, within Psest_0085 at 87.480 kb on - strand, within Psest_0085 at 87.480 kb on - strand, within Psest_0085 at 87.480 kb on - strand, within Psest_0085 at 87.510 kb on - strand, within Psest_0085 at 87.668 kb on + strand, within Psest_0085 at 87.668 kb on + strand, within Psest_0085 at 87.668 kb on + strand, within Psest_0085 at 87.668 kb on + strand, within Psest_0085 at 87.701 kb on + strand, within Psest_0085 at 87.701 kb on + strand, within Psest_0085 at 87.701 kb on + strand, within Psest_0085 at 87.701 kb on + strand, within Psest_0085 at 87.702 kb on - strand, within Psest_0085 at 87.702 kb on - strand, within Psest_0085 at 87.702 kb on - strand, within Psest_0085 at 87.839 kb on + strand, within Psest_0085 at 87.839 kb on + strand, within Psest_0085 at 87.839 kb on + strand, within Psest_0085 at 87.839 kb on + strand, within Psest_0085 at 87.839 kb on + strand, within Psest_0085 at 87.839 kb on + strand, within Psest_0085 at 87.839 kb on + strand, within Psest_0085 at 87.840 kb on - strand, within Psest_0085 at 87.840 kb on - strand, within Psest_0085 at 87.840 kb on - strand, within Psest_0085 at 87.840 kb on - strand, within Psest_0085 at 87.840 kb on - strand, within Psest_0085 at 87.840 kb on - strand, within Psest_0085 at 87.848 kb on + strand, within Psest_0085 at 87.848 kb on + strand, within Psest_0085 at 87.848 kb on + strand, within Psest_0085 at 87.848 kb on + strand, within Psest_0085 at 87.848 kb on + strand, within Psest_0085 at 87.848 kb on + strand, within Psest_0085 at 87.849 kb on - strand, within Psest_0085 at 87.849 kb on - strand, within Psest_0085 at 87.849 kb on - strand, within Psest_0085 at 87.849 kb on - strand, within Psest_0085 at 87.849 kb on - strand, within Psest_0085 at 87.849 kb on - strand, within Psest_0085 at 87.849 kb on - strand, within Psest_0085 at 87.849 kb on - strand, within Psest_0085 at 87.849 kb on - strand, within Psest_0085 at 87.988 kb on + strand, within Psest_0085 at 88.040 kb on + strand, within Psest_0085 at 88.040 kb on + strand, within Psest_0085 at 88.040 kb on + strand, within Psest_0085 at 88.040 kb on + strand, within Psest_0085 at 88.040 kb on + strand, within Psest_0085 at 88.040 kb on + strand, within Psest_0085 at 88.041 kb on - strand, within Psest_0085 at 88.041 kb on - strand, within Psest_0085 at 88.073 kb on + strand, within Psest_0085 at 88.073 kb on + strand, within Psest_0085 at 88.074 kb on - strand, within Psest_0085 at 88.074 kb on - strand, within Psest_0085 at 88.074 kb on - strand, within Psest_0085 at 88.240 kb on - strand at 88.368 kb on + strand at 88.368 kb on + strand at 88.402 kb on - strand at 88.452 kb on + strand at 88.486 kb on + strand at 88.486 kb on + strand at 88.486 kb on + strand at 88.486 kb on + strand at 88.486 kb on + strand at 88.486 kb on + strand at 88.487 kb on - strand at 88.487 kb on - strand at 88.487 kb on - strand at 88.487 kb on - strand at 88.487 kb on - strand at 88.487 kb on - strand at 88.488 kb on + strand at 88.489 kb on - strand at 88.489 kb on - strand at 88.673 kb on - strand, within Psest_0086 at 88.769 kb on - strand, within Psest_0086 at 88.769 kb on - strand, within Psest_0086 at 88.769 kb on - strand, within Psest_0086 at 89.112 kb on + strand, within Psest_0087 at 89.112 kb on + strand, within Psest_0087 at 89.112 kb on + strand, within Psest_0087 at 89.113 kb on - strand, within Psest_0087 at 89.113 kb on - strand, within Psest_0087
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.002 mg/ml remove 86,565 + Psest_0084 0.73 +0.8 86,565 + Psest_0084 0.73 +0.1 86,565 + Psest_0084 0.73 +0.8 86,565 + Psest_0084 0.73 -0.9 86,565 + Psest_0084 0.73 +0.2 86,565 + Psest_0084 0.73 -0.9 86,565 + Psest_0084 0.73 +0.1 86,565 + Psest_0084 0.73 -2.1 86,565 + Psest_0084 0.73 +2.0 86,565 + Psest_0084 0.73 -0.1 86,565 + Psest_0084 0.73 -0.4 86,565 + Psest_0084 0.73 -0.5 86,566 - Psest_0084 0.73 +0.9 86,566 - Psest_0084 0.73 +0.5 86,566 - Psest_0084 0.73 -0.1 86,566 - Psest_0084 0.73 +0.3 86,566 - Psest_0084 0.73 +0.9 86,566 - Psest_0084 0.73 +1.0 86,566 - Psest_0084 0.73 -1.4 86,566 - Psest_0084 0.73 +0.9 86,566 - Psest_0084 0.73 +1.9 86,566 - Psest_0084 0.73 +1.5 86,566 - Psest_0084 0.73 +0.9 86,566 - Psest_0084 0.73 -0.8 86,566 - Psest_0084 0.73 -1.1 86,566 - Psest_0084 0.73 -1.6 86,566 - Psest_0084 0.73 -0.5 86,566 - Psest_0084 0.73 +1.1 86,580 + Psest_0084 0.74 -0.0 86,580 + Psest_0084 0.74 -0.9 86,581 - Psest_0084 0.74 +0.6 86,581 - Psest_0084 0.74 -0.8 86,581 - Psest_0084 0.74 -0.1 86,581 - Psest_0084 0.74 +1.1 86,595 + Psest_0084 0.75 +0.1 86,618 + Psest_0084 0.76 +0.7 86,643 + Psest_0084 0.77 -0.9 86,643 + Psest_0084 0.77 +2.0 86,643 + Psest_0084 0.77 +0.1 86,644 - Psest_0084 0.77 +0.5 86,644 - Psest_0084 0.77 -0.0 86,644 - Psest_0084 0.77 -0.9 86,644 - Psest_0084 0.77 +0.6 86,646 + Psest_0084 0.77 -0.6 86,646 + Psest_0084 0.77 +0.6 86,676 + Psest_0084 0.79 -0.3 86,677 - Psest_0084 0.79 +0.3 86,841 + -0.1 86,841 + Psest_0084 0.87 -0.1 86,841 + Psest_0084 0.87 +0.1 86,841 + Psest_0084 0.87 -1.3 86,841 + Psest_0084 0.87 +0.6 86,842 - Psest_0084 0.87 +1.5 86,842 - Psest_0084 0.87 -0.2 86,842 - Psest_0084 0.87 +0.6 87,021 + -0.4 87,022 - +0.1 87,045 + -0.0 87,046 - +0.4 87,046 - -1.4 87,046 - +0.1 87,046 - -1.3 87,046 - +1.4 87,046 - +1.2 87,046 - -0.6 87,046 - -0.3 87,046 - -0.7 87,137 + -0.1 87,137 + -1.2 87,137 + -1.7 87,137 + +0.6 87,137 + +0.9 87,138 - +0.5 87,181 + -1.0 87,181 + -0.1 87,182 - +0.9 87,239 + -1.5 87,239 + +0.6 87,263 + -1.1 87,263 + -0.2 87,263 + +0.6 87,263 + +0.8 87,263 + -0.2 87,263 + -1.8 87,263 + +1.6 87,263 + -2.5 87,264 - +1.0 87,264 - -0.6 87,396 - Psest_0085 0.17 +1.5 87,479 + Psest_0085 0.25 -0.1 87,479 + Psest_0085 0.25 +0.1 87,479 + Psest_0085 0.25 -0.6 87,480 - Psest_0085 0.25 +2.8 87,480 - Psest_0085 0.25 -1.9 87,480 - Psest_0085 0.25 +0.1 87,510 - Psest_0085 0.29 +0.8 87,668 + Psest_0085 0.45 +0.9 87,668 + Psest_0085 0.45 +0.6 87,668 + Psest_0085 0.45 -0.2 87,668 + Psest_0085 0.45 -0.3 87,701 + Psest_0085 0.49 -1.4 87,701 + Psest_0085 0.49 +0.8 87,701 + Psest_0085 0.49 -0.6 87,701 + Psest_0085 0.49 +0.5 87,702 - Psest_0085 0.49 +1.3 87,702 - Psest_0085 0.49 -1.2 87,702 - Psest_0085 0.49 -0.2 87,839 + Psest_0085 0.63 -0.8 87,839 + Psest_0085 0.63 -0.8 87,839 + Psest_0085 0.63 +0.4 87,839 + Psest_0085 0.63 +0.8 87,839 + Psest_0085 0.63 +0.9 87,839 + Psest_0085 0.63 +0.2 87,839 + Psest_0085 0.63 +0.5 87,840 - Psest_0085 0.63 +0.2 87,840 - Psest_0085 0.63 -0.6 87,840 - Psest_0085 0.63 +1.2 87,840 - Psest_0085 0.63 +2.6 87,840 - Psest_0085 0.63 -0.2 87,840 - Psest_0085 0.63 -1.2 87,848 + Psest_0085 0.64 +1.2 87,848 + Psest_0085 0.64 -0.2 87,848 + Psest_0085 0.64 +0.0 87,848 + Psest_0085 0.64 +1.1 87,848 + Psest_0085 0.64 +0.2 87,848 + Psest_0085 0.64 -0.4 87,849 - Psest_0085 0.64 +0.1 87,849 - Psest_0085 0.64 +1.0 87,849 - Psest_0085 0.64 +1.6 87,849 - Psest_0085 0.64 -0.9 87,849 - Psest_0085 0.64 +2.2 87,849 - Psest_0085 0.64 -1.9 87,849 - Psest_0085 0.64 +1.7 87,849 - Psest_0085 0.64 +0.9 87,849 - Psest_0085 0.64 -0.1 87,988 + Psest_0085 0.79 -0.8 88,040 + Psest_0085 0.84 +0.2 88,040 + Psest_0085 0.84 +0.1 88,040 + Psest_0085 0.84 +2.5 88,040 + Psest_0085 0.84 +0.8 88,040 + Psest_0085 0.84 -0.7 88,040 + Psest_0085 0.84 -1.5 88,041 - Psest_0085 0.84 +0.9 88,041 - Psest_0085 0.84 +0.1 88,073 + Psest_0085 0.88 +0.2 88,073 + Psest_0085 0.88 -3.0 88,074 - Psest_0085 0.88 -1.5 88,074 - Psest_0085 0.88 +0.2 88,074 - Psest_0085 0.88 -0.8 88,240 - +3.2 88,368 + -0.6 88,368 + +1.1 88,402 - +0.3 88,452 + -0.2 88,486 + +1.2 88,486 + +0.8 88,486 + -0.2 88,486 + +1.5 88,486 + -2.4 88,486 + -0.9 88,487 - +0.3 88,487 - +1.7 88,487 - -0.2 88,487 - -0.5 88,487 - -1.6 88,487 - +1.1 88,488 + +0.4 88,489 - +0.8 88,489 - -2.3 88,673 - Psest_0086 0.30 +1.1 88,769 - Psest_0086 0.52 +0.9 88,769 - Psest_0086 0.52 +0.2 88,769 - Psest_0086 0.52 +0.8 89,112 + Psest_0087 0.28 +0.4 89,112 + Psest_0087 0.28 -0.0 89,112 + Psest_0087 0.28 -1.7 89,113 - Psest_0087 0.29 -0.6 89,113 - Psest_0087 0.29 -1.3
Or see this region's nucleotide sequence