Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3463

Experiment: A22 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3461 and Psest_3462 overlap by 11 nucleotidesPsest_3462 and Psest_3463 are separated by 2 nucleotidesPsest_3463 and Psest_3464 are separated by 81 nucleotides Psest_3461: Psest_3461 - Diacylglycerol kinase, at 3,632,264 to 3,632,659 _3461 Psest_3462: Psest_3462 - Lipopolysaccharide kinase (Kdo/WaaP) family., at 3,632,649 to 3,633,368 _3462 Psest_3463: Psest_3463 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 3,633,371 to 3,634,048 _3463 Psest_3464: Psest_3464 - Signal transduction histidine kinase, at 3,634,130 to 3,635,407 _3464 Position (kb) 3633 3634 3635Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3632.965 kb on + strand, within Psest_3462at 3632.969 kb on - strand, within Psest_3462at 3632.969 kb on - strand, within Psest_3462at 3633.076 kb on + strand, within Psest_3462at 3633.076 kb on + strand, within Psest_3462at 3633.076 kb on + strand, within Psest_3462at 3633.076 kb on + strand, within Psest_3462at 3633.076 kb on + strand, within Psest_3462at 3633.077 kb on - strand, within Psest_3462at 3633.077 kb on - strand, within Psest_3462at 3633.077 kb on - strand, within Psest_3462at 3633.077 kb on - strand, within Psest_3462at 3633.302 kb on + strandat 3633.393 kb on + strandat 3633.394 kb on - strandat 3633.558 kb on + strand, within Psest_3463at 3633.558 kb on + strand, within Psest_3463at 3633.558 kb on + strand, within Psest_3463at 3633.558 kb on + strand, within Psest_3463at 3633.558 kb on + strand, within Psest_3463at 3633.558 kb on + strand, within Psest_3463at 3633.558 kb on + strand, within Psest_3463at 3633.558 kb on + strand, within Psest_3463at 3633.558 kb on + strand, within Psest_3463at 3633.558 kb on + strand, within Psest_3463at 3633.558 kb on + strand, within Psest_3463at 3633.559 kb on - strand, within Psest_3463at 3633.559 kb on - strand, within Psest_3463at 3633.559 kb on - strand, within Psest_3463at 3633.559 kb on - strand, within Psest_3463at 3633.559 kb on - strand, within Psest_3463at 3633.559 kb on - strand, within Psest_3463at 3633.559 kb on - strand, within Psest_3463at 3633.559 kb on - strand, within Psest_3463at 3633.559 kb on - strand, within Psest_3463at 3633.559 kb on - strand, within Psest_3463at 3633.559 kb on - strand, within Psest_3463at 3633.982 kb on - strandat 3633.982 kb on - strandat 3633.988 kb on - strandat 3634.005 kb on + strandat 3634.005 kb on + strandat 3634.005 kb on + strandat 3634.006 kb on - strandat 3634.006 kb on - strandat 3634.006 kb on - strandat 3634.006 kb on - strandat 3634.006 kb on - strandat 3634.006 kb on - strandat 3634.222 kb on + strandat 3634.223 kb on - strandat 3634.223 kb on - strandat 3634.223 kb on - strandat 3634.223 kb on - strandat 3634.223 kb on - strandat 3634.392 kb on + strand, within Psest_3464at 3634.392 kb on + strand, within Psest_3464at 3634.392 kb on + strand, within Psest_3464at 3634.392 kb on + strand, within Psest_3464at 3634.392 kb on + strand, within Psest_3464at 3634.392 kb on + strand, within Psest_3464at 3634.392 kb on + strand, within Psest_3464at 3634.393 kb on - strand, within Psest_3464at 3634.393 kb on - strand, within Psest_3464at 3634.449 kb on + strand, within Psest_3464at 3634.449 kb on + strand, within Psest_3464at 3634.449 kb on + strand, within Psest_3464at 3634.449 kb on + strand, within Psest_3464at 3634.449 kb on + strand, within Psest_3464at 3634.450 kb on - strand, within Psest_3464at 3634.450 kb on - strand, within Psest_3464at 3634.450 kb on - strand, within Psest_3464at 3634.450 kb on - strand, within Psest_3464at 3634.450 kb on - strand, within Psest_3464at 3634.450 kb on - strand, within Psest_3464at 3634.541 kb on + strand, within Psest_3464at 3634.542 kb on - strand, within Psest_3464at 3634.904 kb on + strand, within Psest_3464at 3634.904 kb on + strand, within Psest_3464at 3634.904 kb on + strand, within Psest_3464at 3634.904 kb on + strand, within Psest_3464at 3634.905 kb on - strand, within Psest_3464at 3634.905 kb on - strand, within Psest_3464at 3634.905 kb on - strand, within Psest_3464at 3634.905 kb on - strand, within Psest_3464at 3634.905 kb on - strand, within Psest_3464

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.002 mg/ml
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3,632,965 + Psest_3462 0.44 -0.7
3,632,969 - Psest_3462 0.44 +1.3
3,632,969 - Psest_3462 0.44 +0.1
3,633,076 + Psest_3462 0.59 -0.4
3,633,076 + Psest_3462 0.59 +1.7
3,633,076 + Psest_3462 0.59 +0.6
3,633,076 + Psest_3462 0.59 +3.7
3,633,076 + Psest_3462 0.59 +0.5
3,633,077 - Psest_3462 0.59 -0.4
3,633,077 - Psest_3462 0.59 -0.2
3,633,077 - Psest_3462 0.59 +0.2
3,633,077 - Psest_3462 0.59 -0.8
3,633,302 + -0.7
3,633,393 + +0.5
3,633,394 - +2.1
3,633,558 + Psest_3463 0.28 -0.3
3,633,558 + Psest_3463 0.28 -0.9
3,633,558 + Psest_3463 0.28 +1.5
3,633,558 + Psest_3463 0.28 +0.9
3,633,558 + Psest_3463 0.28 -0.2
3,633,558 + Psest_3463 0.28 +0.2
3,633,558 + Psest_3463 0.28 +0.1
3,633,558 + Psest_3463 0.28 -2.3
3,633,558 + Psest_3463 0.28 -1.1
3,633,558 + Psest_3463 0.28 -0.2
3,633,558 + Psest_3463 0.28 -0.2
3,633,559 - Psest_3463 0.28 -1.1
3,633,559 - Psest_3463 0.28 -0.4
3,633,559 - Psest_3463 0.28 -0.9
3,633,559 - Psest_3463 0.28 +0.6
3,633,559 - Psest_3463 0.28 +0.1
3,633,559 - Psest_3463 0.28 -0.7
3,633,559 - Psest_3463 0.28 +1.6
3,633,559 - Psest_3463 0.28 +0.3
3,633,559 - Psest_3463 0.28 +0.2
3,633,559 - Psest_3463 0.28 -0.5
3,633,559 - Psest_3463 0.28 +1.1
3,633,982 - -1.3
3,633,982 - -0.1
3,633,988 - +0.1
3,634,005 + -0.4
3,634,005 + -1.0
3,634,005 + -0.8
3,634,006 - -2.3
3,634,006 - -0.7
3,634,006 - -2.3
3,634,006 - +2.2
3,634,006 - -1.6
3,634,006 - -2.1
3,634,222 + -0.3
3,634,223 - +0.5
3,634,223 - -0.9
3,634,223 - -1.7
3,634,223 - -0.8
3,634,223 - +0.2
3,634,392 + Psest_3464 0.21 -0.8
3,634,392 + Psest_3464 0.21 -0.6
3,634,392 + Psest_3464 0.21 -1.1
3,634,392 + Psest_3464 0.21 +0.1
3,634,392 + Psest_3464 0.21 -2.2
3,634,392 + Psest_3464 0.21 +0.5
3,634,392 + Psest_3464 0.21 +0.3
3,634,393 - Psest_3464 0.21 -0.3
3,634,393 - Psest_3464 0.21 -0.7
3,634,449 + Psest_3464 0.25 -0.2
3,634,449 + Psest_3464 0.25 +0.7
3,634,449 + Psest_3464 0.25 +1.2
3,634,449 + Psest_3464 0.25 +0.3
3,634,449 + Psest_3464 0.25 -0.4
3,634,450 - Psest_3464 0.25 +0.5
3,634,450 - Psest_3464 0.25 -0.7
3,634,450 - Psest_3464 0.25 -1.9
3,634,450 - Psest_3464 0.25 +1.6
3,634,450 - Psest_3464 0.25 -0.8
3,634,450 - Psest_3464 0.25 +0.5
3,634,541 + Psest_3464 0.32 -2.8
3,634,542 - Psest_3464 0.32 +0.3
3,634,904 + Psest_3464 0.61 -1.0
3,634,904 + Psest_3464 0.61 -0.2
3,634,904 + Psest_3464 0.61 +0.5
3,634,904 + Psest_3464 0.61 -2.0
3,634,905 - Psest_3464 0.61 +0.3
3,634,905 - Psest_3464 0.61 +0.1
3,634,905 - Psest_3464 0.61 -0.4
3,634,905 - Psest_3464 0.61 -1.1
3,634,905 - Psest_3464 0.61 +0.9

Or see this region's nucleotide sequence