Experiment: A22 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0667 and Psest_0668 are separated by 6 nucleotides Psest_0668 and Psest_0669 are separated by 85 nucleotides
Psest_0667: Psest_0667 - Phosphodiesterase/alkaline phosphatase D, at 726,330 to 727,883
_0667
Psest_0668: Psest_0668 - Ethanolamine ammonia-lyase, small subunit, at 727,890 to 728,684
_0668
Psest_0669: Psest_0669 - Ethanolamine ammonia-lyase, large subunit, at 728,770 to 730,161
_0669
Position (kb) 727
728
729 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 726.996 kb on + strand, within Psest_0667 at 726.996 kb on + strand, within Psest_0667 at 726.997 kb on - strand, within Psest_0667 at 727.002 kb on + strand, within Psest_0667 at 727.224 kb on + strand, within Psest_0667 at 727.225 kb on - strand, within Psest_0667 at 727.239 kb on + strand, within Psest_0667 at 727.239 kb on + strand, within Psest_0667 at 727.302 kb on - strand, within Psest_0667 at 727.334 kb on - strand, within Psest_0667 at 727.334 kb on - strand, within Psest_0667 at 727.334 kb on - strand, within Psest_0667 at 727.334 kb on - strand, within Psest_0667 at 727.334 kb on - strand, within Psest_0667 at 727.579 kb on - strand, within Psest_0667 at 727.593 kb on + strand, within Psest_0667 at 727.594 kb on - strand, within Psest_0667 at 727.594 kb on - strand, within Psest_0667 at 727.596 kb on + strand, within Psest_0667 at 727.596 kb on + strand, within Psest_0667 at 727.597 kb on - strand, within Psest_0667 at 727.597 kb on - strand, within Psest_0667 at 727.597 kb on - strand, within Psest_0667 at 727.617 kb on + strand, within Psest_0667 at 727.617 kb on + strand, within Psest_0667 at 727.817 kb on - strand at 727.817 kb on - strand at 727.849 kb on - strand at 727.938 kb on + strand at 727.962 kb on + strand at 728.002 kb on + strand, within Psest_0668 at 728.002 kb on + strand, within Psest_0668 at 728.029 kb on + strand, within Psest_0668 at 728.029 kb on + strand, within Psest_0668 at 728.029 kb on + strand, within Psest_0668 at 728.029 kb on + strand, within Psest_0668 at 728.029 kb on + strand, within Psest_0668 at 728.029 kb on + strand, within Psest_0668 at 728.029 kb on + strand, within Psest_0668 at 728.030 kb on - strand, within Psest_0668 at 728.030 kb on - strand, within Psest_0668 at 728.030 kb on - strand, within Psest_0668 at 728.110 kb on + strand, within Psest_0668 at 728.110 kb on + strand, within Psest_0668 at 728.110 kb on + strand, within Psest_0668 at 728.110 kb on + strand, within Psest_0668 at 728.111 kb on - strand, within Psest_0668 at 728.111 kb on - strand, within Psest_0668 at 728.111 kb on - strand, within Psest_0668 at 728.111 kb on - strand, within Psest_0668 at 728.111 kb on - strand, within Psest_0668 at 728.434 kb on + strand, within Psest_0668 at 728.434 kb on + strand, within Psest_0668 at 728.434 kb on + strand, within Psest_0668 at 728.434 kb on + strand, within Psest_0668 at 728.435 kb on - strand at 728.483 kb on + strand, within Psest_0668 at 728.483 kb on + strand, within Psest_0668 at 728.483 kb on + strand, within Psest_0668 at 728.484 kb on - strand, within Psest_0668 at 728.484 kb on - strand, within Psest_0668 at 728.688 kb on + strand at 728.918 kb on + strand, within Psest_0669 at 728.918 kb on + strand, within Psest_0669 at 728.918 kb on + strand, within Psest_0669 at 728.918 kb on + strand, within Psest_0669 at 728.918 kb on + strand, within Psest_0669 at 728.918 kb on + strand, within Psest_0669 at 728.919 kb on - strand, within Psest_0669 at 728.919 kb on - strand, within Psest_0669 at 728.919 kb on - strand, within Psest_0669 at 728.919 kb on - strand, within Psest_0669 at 728.919 kb on - strand, within Psest_0669 at 728.948 kb on + strand, within Psest_0669 at 729.066 kb on - strand, within Psest_0669 at 729.066 kb on - strand, within Psest_0669 at 729.152 kb on + strand, within Psest_0669 at 729.152 kb on + strand, within Psest_0669 at 729.153 kb on - strand, within Psest_0669 at 729.158 kb on + strand, within Psest_0669 at 729.158 kb on + strand, within Psest_0669 at 729.158 kb on + strand, within Psest_0669 at 729.158 kb on + strand, within Psest_0669 at 729.159 kb on - strand, within Psest_0669 at 729.206 kb on + strand, within Psest_0669 at 729.206 kb on + strand, within Psest_0669 at 729.206 kb on + strand, within Psest_0669 at 729.206 kb on + strand, within Psest_0669 at 729.207 kb on - strand, within Psest_0669 at 729.207 kb on - strand, within Psest_0669 at 729.207 kb on - strand, within Psest_0669 at 729.224 kb on + strand, within Psest_0669 at 729.305 kb on + strand, within Psest_0669 at 729.305 kb on + strand, within Psest_0669 at 729.306 kb on - strand, within Psest_0669 at 729.357 kb on - strand, within Psest_0669 at 729.357 kb on - strand, within Psest_0669
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.002 mg/ml remove 726,996 + Psest_0667 0.43 -0.2 726,996 + Psest_0667 0.43 +0.4 726,997 - Psest_0667 0.43 -1.5 727,002 + Psest_0667 0.43 -1.3 727,224 + Psest_0667 0.58 +0.2 727,225 - Psest_0667 0.58 -0.3 727,239 + Psest_0667 0.58 -0.3 727,239 + Psest_0667 0.58 -0.7 727,302 - Psest_0667 0.63 +0.1 727,334 - Psest_0667 0.65 -0.3 727,334 - Psest_0667 0.65 -0.6 727,334 - Psest_0667 0.65 +0.5 727,334 - Psest_0667 0.65 +0.4 727,334 - Psest_0667 0.65 +0.2 727,579 - Psest_0667 0.80 -0.1 727,593 + Psest_0667 0.81 -0.0 727,594 - Psest_0667 0.81 +1.0 727,594 - Psest_0667 0.81 +2.9 727,596 + Psest_0667 0.81 -0.5 727,596 + Psest_0667 0.81 -0.5 727,597 - Psest_0667 0.82 +0.5 727,597 - Psest_0667 0.82 -2.0 727,597 - Psest_0667 0.82 -0.3 727,617 + Psest_0667 0.83 +0.7 727,617 + Psest_0667 0.83 -0.7 727,817 - -0.4 727,817 - -1.4 727,849 - -0.8 727,938 + +1.2 727,962 + +0.4 728,002 + Psest_0668 0.14 -0.1 728,002 + Psest_0668 0.14 +0.2 728,029 + Psest_0668 0.17 -0.8 728,029 + Psest_0668 0.17 +0.2 728,029 + Psest_0668 0.17 +0.2 728,029 + Psest_0668 0.17 -0.5 728,029 + Psest_0668 0.17 +0.6 728,029 + Psest_0668 0.17 -1.7 728,029 + Psest_0668 0.17 +0.5 728,030 - Psest_0668 0.18 +1.3 728,030 - Psest_0668 0.18 +0.6 728,030 - Psest_0668 0.18 +0.1 728,110 + Psest_0668 0.28 -0.5 728,110 + Psest_0668 0.28 -0.4 728,110 + Psest_0668 0.28 -1.1 728,110 + Psest_0668 0.28 -0.8 728,111 - Psest_0668 0.28 -0.1 728,111 - Psest_0668 0.28 -1.3 728,111 - Psest_0668 0.28 -0.6 728,111 - Psest_0668 0.28 -0.1 728,111 - Psest_0668 0.28 -1.8 728,434 + Psest_0668 0.68 -0.7 728,434 + Psest_0668 0.68 -0.2 728,434 + Psest_0668 0.68 +0.3 728,434 + Psest_0668 0.68 -0.7 728,435 - -0.7 728,483 + Psest_0668 0.75 -0.9 728,483 + Psest_0668 0.75 +0.1 728,483 + Psest_0668 0.75 +2.1 728,484 - Psest_0668 0.75 -0.8 728,484 - Psest_0668 0.75 -1.7 728,688 + +1.2 728,918 + Psest_0669 0.11 +1.6 728,918 + Psest_0669 0.11 -1.2 728,918 + Psest_0669 0.11 +1.8 728,918 + Psest_0669 0.11 +0.1 728,918 + Psest_0669 0.11 -0.7 728,918 + Psest_0669 0.11 +1.4 728,919 - Psest_0669 0.11 -0.7 728,919 - Psest_0669 0.11 +0.5 728,919 - Psest_0669 0.11 +0.3 728,919 - Psest_0669 0.11 -0.4 728,919 - Psest_0669 0.11 +0.5 728,948 + Psest_0669 0.13 -0.8 729,066 - Psest_0669 0.21 -0.4 729,066 - Psest_0669 0.21 +1.1 729,152 + Psest_0669 0.27 +1.1 729,152 + Psest_0669 0.27 -0.5 729,153 - Psest_0669 0.28 -0.8 729,158 + Psest_0669 0.28 +0.7 729,158 + Psest_0669 0.28 +1.3 729,158 + Psest_0669 0.28 -0.2 729,158 + Psest_0669 0.28 +0.5 729,159 - Psest_0669 0.28 +0.9 729,206 + Psest_0669 0.31 +0.3 729,206 + Psest_0669 0.31 -0.8 729,206 + Psest_0669 0.31 +1.1 729,206 + Psest_0669 0.31 +0.6 729,207 - Psest_0669 0.31 -0.2 729,207 - Psest_0669 0.31 +1.2 729,207 - Psest_0669 0.31 -0.2 729,224 + Psest_0669 0.33 -0.4 729,305 + Psest_0669 0.38 -0.6 729,305 + Psest_0669 0.38 -2.2 729,306 - Psest_0669 0.39 +0.9 729,357 - Psest_0669 0.42 -0.4 729,357 - Psest_0669 0.42 +0.1
Or see this region's nucleotide sequence