Experiment: A22 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0661 and Psest_0662 are separated by 16 nucleotides Psest_0662 and Psest_0663 are separated by 72 nucleotides
Psest_0661: Psest_0661 - PAS domain S-box, at 718,437 to 720,476
_0661
Psest_0662: Psest_0662 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 720,493 to 721,146
_0662
Psest_0663: Psest_0663 - PAS fold., at 721,219 to 723,018
_0663
Position (kb) 720
721
722 Strain fitness (log2 ratio) -2
-1
0
1
2 at 719.686 kb on + strand, within Psest_0661 at 719.686 kb on + strand, within Psest_0661 at 719.686 kb on + strand, within Psest_0661 at 719.687 kb on - strand, within Psest_0661 at 719.687 kb on - strand, within Psest_0661 at 719.687 kb on - strand, within Psest_0661 at 720.712 kb on + strand, within Psest_0662 at 720.760 kb on + strand, within Psest_0662 at 720.760 kb on + strand, within Psest_0662 at 720.761 kb on - strand, within Psest_0662 at 721.091 kb on + strand at 721.255 kb on + strand at 721.256 kb on - strand at 721.343 kb on + strand at 721.619 kb on + strand, within Psest_0663 at 721.619 kb on + strand, within Psest_0663 at 721.620 kb on - strand, within Psest_0663 at 721.620 kb on - strand, within Psest_0663 at 721.620 kb on - strand, within Psest_0663 at 721.620 kb on - strand, within Psest_0663 at 721.845 kb on + strand, within Psest_0663
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.002 mg/ml remove 719,686 + Psest_0661 0.61 -0.3 719,686 + Psest_0661 0.61 +0.4 719,686 + Psest_0661 0.61 +0.7 719,687 - Psest_0661 0.61 -0.2 719,687 - Psest_0661 0.61 +2.3 719,687 - Psest_0661 0.61 +0.3 720,712 + Psest_0662 0.33 +0.4 720,760 + Psest_0662 0.41 -1.2 720,760 + Psest_0662 0.41 -1.2 720,761 - Psest_0662 0.41 -2.6 721,091 + -1.6 721,255 + -1.7 721,256 - +1.0 721,343 + -0.2 721,619 + Psest_0663 0.22 +1.6 721,619 + Psest_0663 0.22 +0.3 721,620 - Psest_0663 0.22 -0.3 721,620 - Psest_0663 0.22 -0.3 721,620 - Psest_0663 0.22 -0.6 721,620 - Psest_0663 0.22 +0.0 721,845 + Psest_0663 0.35 -2.0
Or see this region's nucleotide sequence