Experiment: A22 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2719 and Psest_2720 are separated by 141 nucleotides Psest_2720 and Psest_2721 are separated by 127 nucleotides
Psest_2719: Psest_2719 - acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family, at 2,907,730 to 2,908,950
_2719
Psest_2720: Psest_2720 - Enoyl-CoA hydratase/carnithine racemase, at 2,909,092 to 2,909,781
_2720
Psest_2721: Psest_2721 - HD-GYP domain, at 2,909,909 to 2,911,198
_2721
Position (kb)
2909
2910 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2908.230 kb on - strand, within Psest_2719 at 2908.329 kb on - strand, within Psest_2719 at 2908.482 kb on - strand, within Psest_2719 at 2908.572 kb on - strand, within Psest_2719 at 2908.709 kb on + strand, within Psest_2719 at 2908.709 kb on + strand, within Psest_2719 at 2908.709 kb on + strand, within Psest_2719 at 2908.709 kb on + strand, within Psest_2719 at 2908.709 kb on + strand, within Psest_2719 at 2908.709 kb on + strand, within Psest_2719 at 2908.710 kb on - strand, within Psest_2719 at 2908.710 kb on - strand, within Psest_2719 at 2908.710 kb on - strand, within Psest_2719 at 2908.710 kb on - strand, within Psest_2719 at 2908.710 kb on - strand, within Psest_2719 at 2909.027 kb on + strand at 2909.028 kb on - strand at 2909.187 kb on + strand, within Psest_2720 at 2909.188 kb on - strand, within Psest_2720 at 2909.188 kb on - strand, within Psest_2720 at 2909.251 kb on + strand, within Psest_2720 at 2909.251 kb on + strand, within Psest_2720 at 2909.252 kb on - strand, within Psest_2720 at 2909.252 kb on - strand, within Psest_2720 at 2909.693 kb on - strand, within Psest_2720 at 2909.763 kb on - strand at 2909.763 kb on - strand at 2909.977 kb on + strand at 2910.366 kb on + strand, within Psest_2721 at 2910.366 kb on + strand, within Psest_2721 at 2910.366 kb on + strand, within Psest_2721 at 2910.366 kb on + strand, within Psest_2721 at 2910.367 kb on - strand, within Psest_2721 at 2910.432 kb on + strand, within Psest_2721 at 2910.694 kb on + strand, within Psest_2721 at 2910.694 kb on + strand, within Psest_2721 at 2910.695 kb on - strand, within Psest_2721 at 2910.696 kb on + strand, within Psest_2721 at 2910.696 kb on + strand, within Psest_2721 at 2910.696 kb on + strand, within Psest_2721 at 2910.696 kb on + strand, within Psest_2721 at 2910.696 kb on + strand, within Psest_2721 at 2910.696 kb on + strand, within Psest_2721 at 2910.697 kb on - strand, within Psest_2721 at 2910.697 kb on - strand, within Psest_2721 at 2910.697 kb on - strand, within Psest_2721 at 2910.697 kb on - strand, within Psest_2721
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.002 mg/ml remove 2,908,230 - Psest_2719 0.41 +1.5 2,908,329 - Psest_2719 0.49 +1.5 2,908,482 - Psest_2719 0.62 -0.9 2,908,572 - Psest_2719 0.69 +0.5 2,908,709 + Psest_2719 0.80 +2.5 2,908,709 + Psest_2719 0.80 +1.5 2,908,709 + Psest_2719 0.80 +1.5 2,908,709 + Psest_2719 0.80 +1.5 2,908,709 + Psest_2719 0.80 +0.5 2,908,709 + Psest_2719 0.80 +0.5 2,908,710 - Psest_2719 0.80 +1.5 2,908,710 - Psest_2719 0.80 -0.5 2,908,710 - Psest_2719 0.80 -0.1 2,908,710 - Psest_2719 0.80 -0.5 2,908,710 - Psest_2719 0.80 +2.5 2,909,027 + +0.4 2,909,028 - +0.6 2,909,187 + Psest_2720 0.14 -0.9 2,909,188 - Psest_2720 0.14 +3.5 2,909,188 - Psest_2720 0.14 +2.4 2,909,251 + Psest_2720 0.23 +0.9 2,909,251 + Psest_2720 0.23 +0.7 2,909,252 - Psest_2720 0.23 -2.0 2,909,252 - Psest_2720 0.23 +0.9 2,909,693 - Psest_2720 0.87 -1.0 2,909,763 - +1.1 2,909,763 - -1.9 2,909,977 + +0.1 2,910,366 + Psest_2721 0.35 -0.5 2,910,366 + Psest_2721 0.35 +0.3 2,910,366 + Psest_2721 0.35 +1.2 2,910,366 + Psest_2721 0.35 +0.2 2,910,367 - Psest_2721 0.36 +0.2 2,910,432 + Psest_2721 0.41 -0.8 2,910,694 + Psest_2721 0.61 -0.3 2,910,694 + Psest_2721 0.61 -0.2 2,910,695 - Psest_2721 0.61 +0.3 2,910,696 + Psest_2721 0.61 +0.9 2,910,696 + Psest_2721 0.61 +0.2 2,910,696 + Psest_2721 0.61 -1.1 2,910,696 + Psest_2721 0.61 -0.3 2,910,696 + Psest_2721 0.61 -0.5 2,910,696 + Psest_2721 0.61 -0.9 2,910,697 - Psest_2721 0.61 -2.9 2,910,697 - Psest_2721 0.61 -0.6 2,910,697 - Psest_2721 0.61 +1.7 2,910,697 - Psest_2721 0.61 +0.2
Or see this region's nucleotide sequence