Experiment: A22 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0235 and Psest_0236 are separated by 62 nucleotides Psest_0236 and Psest_0237 are separated by 102 nucleotides Psest_0237 and Psest_0238 are separated by 129 nucleotides
Psest_0235: Psest_0235 - isoform II., at 245,886 to 246,734
_0235
Psest_0236: Psest_0236 - Predicted SAM-dependent methyltransferases, at 246,797 to 247,993
_0236
Psest_0237: Psest_0237 - intracellular protease, PfpI family, at 248,096 to 248,635
_0237
Psest_0238: Psest_0238 - Predicted signal transduction protein, at 248,765 to 249,631
_0238
Position (kb) 246
247
248 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 245.826 kb on + strand at 245.851 kb on - strand at 245.851 kb on - strand at 245.851 kb on - strand at 245.857 kb on + strand at 245.859 kb on + strand at 245.859 kb on + strand at 245.859 kb on + strand at 245.859 kb on + strand at 245.859 kb on + strand at 245.907 kb on + strand at 245.908 kb on - strand at 245.908 kb on - strand at 245.908 kb on - strand at 245.908 kb on - strand at 245.908 kb on - strand at 245.911 kb on + strand at 245.911 kb on + strand at 245.912 kb on - strand at 246.022 kb on - strand, within Psest_0235 at 246.147 kb on + strand, within Psest_0235 at 246.147 kb on + strand, within Psest_0235 at 246.148 kb on - strand, within Psest_0235 at 246.148 kb on - strand, within Psest_0235 at 246.148 kb on - strand, within Psest_0235 at 246.249 kb on + strand, within Psest_0235 at 246.249 kb on + strand, within Psest_0235 at 246.250 kb on - strand, within Psest_0235 at 246.276 kb on + strand, within Psest_0235 at 246.276 kb on + strand, within Psest_0235 at 246.285 kb on + strand, within Psest_0235 at 246.285 kb on + strand, within Psest_0235 at 246.285 kb on + strand, within Psest_0235 at 246.285 kb on + strand, within Psest_0235 at 246.285 kb on + strand, within Psest_0235 at 246.285 kb on + strand, within Psest_0235 at 246.285 kb on + strand, within Psest_0235 at 246.285 kb on + strand, within Psest_0235 at 246.285 kb on + strand, within Psest_0235 at 246.286 kb on - strand, within Psest_0235 at 246.286 kb on - strand, within Psest_0235 at 246.286 kb on - strand, within Psest_0235 at 246.286 kb on - strand, within Psest_0235 at 246.286 kb on - strand, within Psest_0235 at 246.286 kb on - strand, within Psest_0235 at 246.286 kb on - strand, within Psest_0235 at 246.286 kb on - strand, within Psest_0235 at 246.318 kb on - strand, within Psest_0235 at 246.318 kb on - strand, within Psest_0235 at 246.402 kb on + strand, within Psest_0235 at 246.403 kb on - strand, within Psest_0235 at 246.561 kb on + strand, within Psest_0235 at 246.562 kb on - strand, within Psest_0235 at 246.669 kb on + strand at 246.712 kb on + strand at 246.712 kb on + strand at 246.713 kb on - strand at 246.713 kb on - strand at 246.713 kb on - strand at 246.838 kb on - strand at 246.838 kb on - strand at 247.287 kb on - strand, within Psest_0236 at 247.305 kb on + strand, within Psest_0236 at 247.305 kb on + strand, within Psest_0236 at 247.306 kb on - strand, within Psest_0236 at 247.306 kb on - strand, within Psest_0236 at 247.306 kb on - strand, within Psest_0236 at 247.306 kb on - strand, within Psest_0236 at 247.306 kb on - strand, within Psest_0236 at 247.341 kb on + strand, within Psest_0236 at 247.341 kb on + strand, within Psest_0236 at 247.341 kb on + strand, within Psest_0236 at 247.341 kb on + strand, within Psest_0236 at 247.342 kb on - strand, within Psest_0236 at 247.342 kb on - strand, within Psest_0236 at 247.342 kb on - strand, within Psest_0236 at 247.377 kb on + strand, within Psest_0236 at 247.377 kb on + strand, within Psest_0236 at 247.377 kb on + strand, within Psest_0236 at 247.378 kb on - strand, within Psest_0236 at 247.483 kb on - strand, within Psest_0236 at 247.483 kb on - strand, within Psest_0236 at 247.532 kb on + strand, within Psest_0236 at 247.532 kb on + strand, within Psest_0236 at 247.556 kb on + strand, within Psest_0236 at 247.556 kb on + strand, within Psest_0236 at 247.557 kb on - strand, within Psest_0236 at 247.557 kb on - strand, within Psest_0236 at 247.674 kb on + strand, within Psest_0236 at 247.674 kb on + strand, within Psest_0236 at 247.924 kb on - strand at 247.924 kb on - strand at 247.924 kb on - strand at 248.026 kb on - strand at 248.419 kb on - strand, within Psest_0237 at 248.453 kb on + strand, within Psest_0237 at 248.454 kb on - strand, within Psest_0237 at 248.600 kb on + strand at 248.601 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.002 mg/ml remove 245,826 + -2.4 245,851 - -1.0 245,851 - -0.5 245,851 - -1.8 245,857 + -0.4 245,859 + -1.5 245,859 + -0.3 245,859 + +0.8 245,859 + -1.3 245,859 + -0.4 245,907 + -0.7 245,908 - -2.0 245,908 - +0.4 245,908 - +0.9 245,908 - -3.0 245,908 - +0.2 245,911 + +1.4 245,911 + +0.6 245,912 - -0.1 246,022 - Psest_0235 0.16 +0.6 246,147 + Psest_0235 0.31 -0.6 246,147 + Psest_0235 0.31 -0.8 246,148 - Psest_0235 0.31 +2.0 246,148 - Psest_0235 0.31 -0.6 246,148 - Psest_0235 0.31 -0.2 246,249 + Psest_0235 0.43 +1.1 246,249 + Psest_0235 0.43 +0.2 246,250 - Psest_0235 0.43 +0.5 246,276 + Psest_0235 0.46 +1.0 246,276 + Psest_0235 0.46 +0.1 246,285 + Psest_0235 0.47 -0.3 246,285 + Psest_0235 0.47 +0.3 246,285 + Psest_0235 0.47 -1.0 246,285 + Psest_0235 0.47 +0.2 246,285 + Psest_0235 0.47 +1.6 246,285 + Psest_0235 0.47 +0.2 246,285 + Psest_0235 0.47 -0.2 246,285 + Psest_0235 0.47 +0.3 246,285 + Psest_0235 0.47 +0.3 246,286 - Psest_0235 0.47 -0.1 246,286 - Psest_0235 0.47 -0.1 246,286 - Psest_0235 0.47 +1.3 246,286 - Psest_0235 0.47 -0.3 246,286 - Psest_0235 0.47 -1.5 246,286 - Psest_0235 0.47 +0.9 246,286 - Psest_0235 0.47 -1.5 246,286 - Psest_0235 0.47 +1.2 246,318 - Psest_0235 0.51 +0.9 246,318 - Psest_0235 0.51 +1.6 246,402 + Psest_0235 0.61 -2.2 246,403 - Psest_0235 0.61 -1.0 246,561 + Psest_0235 0.80 -0.1 246,562 - Psest_0235 0.80 +1.5 246,669 + +0.2 246,712 + -0.9 246,712 + -0.1 246,713 - +0.5 246,713 - +0.6 246,713 - -0.4 246,838 - +1.7 246,838 - +0.3 247,287 - Psest_0236 0.41 -0.1 247,305 + Psest_0236 0.42 +1.2 247,305 + Psest_0236 0.42 +0.9 247,306 - Psest_0236 0.43 +0.3 247,306 - Psest_0236 0.43 +0.1 247,306 - Psest_0236 0.43 +1.4 247,306 - Psest_0236 0.43 +2.2 247,306 - Psest_0236 0.43 +1.2 247,341 + Psest_0236 0.45 -2.1 247,341 + Psest_0236 0.45 -0.9 247,341 + Psest_0236 0.45 -1.5 247,341 + Psest_0236 0.45 -1.2 247,342 - Psest_0236 0.46 +2.0 247,342 - Psest_0236 0.46 +0.4 247,342 - Psest_0236 0.46 +0.9 247,377 + Psest_0236 0.48 -0.3 247,377 + Psest_0236 0.48 +1.5 247,377 + Psest_0236 0.48 +1.0 247,378 - Psest_0236 0.49 +0.6 247,483 - Psest_0236 0.57 +2.0 247,483 - Psest_0236 0.57 +1.1 247,532 + Psest_0236 0.61 -0.4 247,532 + Psest_0236 0.61 +0.5 247,556 + Psest_0236 0.63 +1.0 247,556 + Psest_0236 0.63 +0.6 247,557 - Psest_0236 0.63 -1.2 247,557 - Psest_0236 0.63 +1.2 247,674 + Psest_0236 0.73 +0.3 247,674 + Psest_0236 0.73 -0.8 247,924 - -2.1 247,924 - -0.1 247,924 - -0.4 248,026 - +1.2 248,419 - Psest_0237 0.60 +0.5 248,453 + Psest_0237 0.66 +0.3 248,454 - Psest_0237 0.66 -0.2 248,600 + +0.7 248,601 - -0.8
Or see this region's nucleotide sequence