Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1440

Experiment: A22 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1438 and Psest_1439 are separated by 4 nucleotidesPsest_1439 and Psest_1440 are separated by 261 nucleotidesPsest_1440 and Psest_1441 are separated by 367 nucleotides Psest_1438: Psest_1438 - Transcriptional regulator, at 1,548,456 to 1,549,415 _1438 Psest_1439: Psest_1439 - Transcriptional regulator, at 1,549,420 to 1,550,091 _1439 Psest_1440: Psest_1440 - Nucleoside-binding outer membrane protein, at 1,550,353 to 1,551,168 _1440 Psest_1441: Psest_1441 - Curlin associated repeat., at 1,551,536 to 1,552,822 _1441 Position (kb) 1550 1551 1552Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1549.376 kb on - strandat 1549.376 kb on - strandat 1549.376 kb on - strandat 1549.785 kb on - strand, within Psest_1439at 1549.785 kb on - strand, within Psest_1439at 1549.877 kb on + strand, within Psest_1439at 1549.877 kb on + strand, within Psest_1439at 1549.877 kb on + strand, within Psest_1439at 1549.877 kb on + strand, within Psest_1439at 1549.901 kb on + strand, within Psest_1439at 1549.901 kb on + strand, within Psest_1439at 1549.901 kb on + strand, within Psest_1439at 1549.901 kb on + strand, within Psest_1439at 1549.901 kb on + strand, within Psest_1439at 1549.901 kb on + strand, within Psest_1439at 1549.901 kb on + strand, within Psest_1439at 1549.901 kb on + strand, within Psest_1439at 1549.901 kb on + strand, within Psest_1439at 1549.901 kb on + strand, within Psest_1439at 1549.901 kb on + strand, within Psest_1439at 1549.901 kb on + strand, within Psest_1439at 1549.901 kb on + strand, within Psest_1439at 1549.901 kb on + strand, within Psest_1439at 1549.901 kb on + strand, within Psest_1439at 1549.902 kb on - strand, within Psest_1439at 1549.902 kb on - strand, within Psest_1439at 1549.902 kb on - strand, within Psest_1439at 1549.902 kb on - strand, within Psest_1439at 1549.902 kb on - strand, within Psest_1439at 1549.902 kb on - strand, within Psest_1439at 1549.904 kb on + strand, within Psest_1439at 1549.905 kb on - strand, within Psest_1439at 1549.905 kb on - strand, within Psest_1439at 1550.060 kb on + strandat 1550.444 kb on + strand, within Psest_1440at 1550.444 kb on + strand, within Psest_1440at 1550.444 kb on + strand, within Psest_1440at 1550.445 kb on - strand, within Psest_1440at 1550.445 kb on - strand, within Psest_1440at 1550.459 kb on + strand, within Psest_1440at 1550.460 kb on - strand, within Psest_1440at 1550.480 kb on + strand, within Psest_1440at 1550.480 kb on + strand, within Psest_1440at 1550.480 kb on + strand, within Psest_1440at 1550.480 kb on + strand, within Psest_1440at 1550.480 kb on + strand, within Psest_1440at 1550.480 kb on + strand, within Psest_1440at 1550.480 kb on + strand, within Psest_1440at 1550.480 kb on + strand, within Psest_1440at 1550.480 kb on + strand, within Psest_1440at 1550.480 kb on + strand, within Psest_1440at 1550.480 kb on + strand, within Psest_1440at 1550.480 kb on + strand, within Psest_1440at 1550.480 kb on + strand, within Psest_1440at 1550.480 kb on + strand, within Psest_1440at 1550.481 kb on - strand, within Psest_1440at 1550.481 kb on - strand, within Psest_1440at 1550.481 kb on - strand, within Psest_1440at 1550.498 kb on + strand, within Psest_1440at 1550.498 kb on + strand, within Psest_1440at 1550.498 kb on + strand, within Psest_1440at 1550.498 kb on + strand, within Psest_1440at 1550.499 kb on - strand, within Psest_1440at 1550.499 kb on - strand, within Psest_1440at 1550.522 kb on + strand, within Psest_1440at 1550.522 kb on + strand, within Psest_1440at 1550.522 kb on + strand, within Psest_1440at 1550.522 kb on + strand, within Psest_1440at 1550.523 kb on - strand, within Psest_1440at 1550.601 kb on + strand, within Psest_1440at 1550.601 kb on + strand, within Psest_1440at 1550.604 kb on - strand, within Psest_1440at 1550.604 kb on - strand, within Psest_1440at 1550.714 kb on + strand, within Psest_1440at 1550.714 kb on + strand, within Psest_1440at 1550.714 kb on + strand, within Psest_1440at 1550.714 kb on + strand, within Psest_1440at 1550.714 kb on + strand, within Psest_1440at 1550.714 kb on + strand, within Psest_1440at 1550.714 kb on + strand, within Psest_1440at 1550.714 kb on + strand, within Psest_1440at 1550.714 kb on + strand, within Psest_1440at 1550.714 kb on + strand, within Psest_1440at 1550.714 kb on + strand, within Psest_1440at 1550.715 kb on - strand, within Psest_1440at 1550.715 kb on - strand, within Psest_1440at 1550.715 kb on - strand, within Psest_1440at 1550.715 kb on - strand, within Psest_1440at 1550.715 kb on - strand, within Psest_1440at 1550.715 kb on - strand, within Psest_1440at 1550.777 kb on + strand, within Psest_1440at 1550.777 kb on + strand, within Psest_1440at 1550.777 kb on + strand, within Psest_1440at 1550.777 kb on + strand, within Psest_1440at 1550.777 kb on + strand, within Psest_1440at 1550.777 kb on + strand, within Psest_1440at 1550.777 kb on + strand, within Psest_1440at 1550.778 kb on - strand, within Psest_1440at 1550.778 kb on - strand, within Psest_1440at 1550.822 kb on + strand, within Psest_1440at 1550.822 kb on + strand, within Psest_1440at 1550.822 kb on + strand, within Psest_1440at 1550.918 kb on + strand, within Psest_1440at 1550.918 kb on + strand, within Psest_1440at 1550.918 kb on + strand, within Psest_1440at 1550.918 kb on + strand, within Psest_1440at 1550.918 kb on + strand, within Psest_1440at 1550.918 kb on + strand, within Psest_1440at 1550.918 kb on + strand, within Psest_1440at 1550.918 kb on + strand, within Psest_1440at 1550.918 kb on + strand, within Psest_1440at 1550.918 kb on + strand, within Psest_1440at 1550.918 kb on + strand, within Psest_1440at 1550.918 kb on + strand, within Psest_1440at 1550.919 kb on - strand, within Psest_1440at 1550.919 kb on - strand, within Psest_1440at 1550.919 kb on - strand, within Psest_1440at 1550.919 kb on - strand, within Psest_1440at 1550.951 kb on + strand, within Psest_1440at 1550.951 kb on + strand, within Psest_1440at 1550.951 kb on + strand, within Psest_1440at 1550.951 kb on + strand, within Psest_1440at 1550.952 kb on - strand, within Psest_1440at 1551.050 kb on + strand, within Psest_1440at 1551.050 kb on + strand, within Psest_1440at 1551.050 kb on + strand, within Psest_1440at 1551.050 kb on + strand, within Psest_1440at 1551.051 kb on - strand, within Psest_1440at 1551.051 kb on - strand, within Psest_1440at 1551.051 kb on - strand, within Psest_1440at 1551.062 kb on + strand, within Psest_1440at 1551.063 kb on - strand, within Psest_1440at 1551.069 kb on - strand, within Psest_1440at 1551.069 kb on - strand, within Psest_1440at 1551.069 kb on - strand, within Psest_1440at 1551.183 kb on + strandat 1551.205 kb on + strandat 1551.205 kb on + strandat 1551.205 kb on + strandat 1551.205 kb on + strandat 1551.205 kb on + strandat 1551.205 kb on + strandat 1551.205 kb on + strandat 1551.205 kb on + strandat 1551.205 kb on + strandat 1551.205 kb on + strandat 1551.205 kb on + strandat 1551.205 kb on + strandat 1551.205 kb on + strandat 1551.205 kb on + strandat 1551.206 kb on - strandat 1551.206 kb on - strandat 1551.537 kb on + strandat 1551.537 kb on + strandat 1551.537 kb on + strandat 1551.537 kb on + strandat 1551.538 kb on - strandat 1551.538 kb on - strandat 1551.585 kb on + strandat 1551.585 kb on + strandat 1551.585 kb on + strandat 1551.585 kb on + strandat 1551.585 kb on + strandat 1551.585 kb on + strandat 1551.586 kb on - strandat 1551.586 kb on - strandat 1551.586 kb on - strandat 1551.586 kb on - strandat 1551.586 kb on - strandat 1551.586 kb on - strandat 1551.653 kb on + strandat 1551.653 kb on + strandat 1551.653 kb on + strandat 1551.654 kb on - strandat 1551.654 kb on - strandat 1551.771 kb on + strand, within Psest_1441at 1551.771 kb on + strand, within Psest_1441at 1551.771 kb on + strand, within Psest_1441at 1551.772 kb on - strand, within Psest_1441at 1551.894 kb on + strand, within Psest_1441at 1551.894 kb on + strand, within Psest_1441at 1551.894 kb on + strand, within Psest_1441at 1551.894 kb on + strand, within Psest_1441at 1552.104 kb on + strand, within Psest_1441at 1552.104 kb on + strand, within Psest_1441at 1552.104 kb on + strand, within Psest_1441at 1552.104 kb on + strand, within Psest_1441at 1552.105 kb on - strand, within Psest_1441at 1552.105 kb on - strand, within Psest_1441at 1552.105 kb on - strand, within Psest_1441at 1552.105 kb on - strand, within Psest_1441at 1552.125 kb on + strand, within Psest_1441at 1552.125 kb on + strand, within Psest_1441at 1552.125 kb on + strand, within Psest_1441at 1552.125 kb on + strand, within Psest_1441at 1552.125 kb on + strand, within Psest_1441at 1552.125 kb on + strand, within Psest_1441at 1552.125 kb on + strand, within Psest_1441at 1552.125 kb on + strand, within Psest_1441at 1552.125 kb on + strand, within Psest_1441at 1552.125 kb on + strand, within Psest_1441at 1552.126 kb on - strand, within Psest_1441at 1552.126 kb on - strand, within Psest_1441at 1552.126 kb on - strand, within Psest_1441at 1552.126 kb on - strand, within Psest_1441at 1552.126 kb on - strand, within Psest_1441

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.002 mg/ml
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1,549,376 - -1.7
1,549,376 - +2.6
1,549,376 - -0.7
1,549,785 - Psest_1439 0.54 -1.7
1,549,785 - Psest_1439 0.54 +1.6
1,549,877 + Psest_1439 0.68 -1.5
1,549,877 + Psest_1439 0.68 +1.9
1,549,877 + Psest_1439 0.68 -0.5
1,549,877 + Psest_1439 0.68 +2.5
1,549,901 + Psest_1439 0.72 -0.3
1,549,901 + Psest_1439 0.72 -0.6
1,549,901 + Psest_1439 0.72 +0.5
1,549,901 + Psest_1439 0.72 +1.0
1,549,901 + Psest_1439 0.72 +1.0
1,549,901 + Psest_1439 0.72 +1.5
1,549,901 + Psest_1439 0.72 -0.5
1,549,901 + Psest_1439 0.72 -0.1
1,549,901 + Psest_1439 0.72 -0.5
1,549,901 + Psest_1439 0.72 +1.3
1,549,901 + Psest_1439 0.72 +0.7
1,549,901 + Psest_1439 0.72 +2.2
1,549,901 + Psest_1439 0.72 +1.9
1,549,901 + Psest_1439 0.72 +1.3
1,549,901 + Psest_1439 0.72 -0.4
1,549,902 - Psest_1439 0.72 -1.8
1,549,902 - Psest_1439 0.72 +0.9
1,549,902 - Psest_1439 0.72 +1.2
1,549,902 - Psest_1439 0.72 +0.3
1,549,902 - Psest_1439 0.72 -1.3
1,549,902 - Psest_1439 0.72 -0.4
1,549,904 + Psest_1439 0.72 +0.4
1,549,905 - Psest_1439 0.72 -1.5
1,549,905 - Psest_1439 0.72 +0.0
1,550,060 + +0.5
1,550,444 + Psest_1440 0.11 -2.0
1,550,444 + Psest_1440 0.11 +1.4
1,550,444 + Psest_1440 0.11 +0.4
1,550,445 - Psest_1440 0.11 +0.3
1,550,445 - Psest_1440 0.11 -0.5
1,550,459 + Psest_1440 0.13 -2.8
1,550,460 - Psest_1440 0.13 -0.1
1,550,480 + Psest_1440 0.16 -0.7
1,550,480 + Psest_1440 0.16 -0.4
1,550,480 + Psest_1440 0.16 +0.6
1,550,480 + Psest_1440 0.16 +1.2
1,550,480 + Psest_1440 0.16 -2.2
1,550,480 + Psest_1440 0.16 +0.5
1,550,480 + Psest_1440 0.16 -0.3
1,550,480 + Psest_1440 0.16 -0.1
1,550,480 + Psest_1440 0.16 +1.6
1,550,480 + Psest_1440 0.16 +0.1
1,550,480 + Psest_1440 0.16 -1.5
1,550,480 + Psest_1440 0.16 +0.0
1,550,480 + Psest_1440 0.16 +0.6
1,550,480 + Psest_1440 0.16 +0.7
1,550,481 - Psest_1440 0.16 -1.6
1,550,481 - Psest_1440 0.16 -2.6
1,550,481 - Psest_1440 0.16 -0.8
1,550,498 + Psest_1440 0.18 +0.1
1,550,498 + Psest_1440 0.18 +0.5
1,550,498 + Psest_1440 0.18 +0.2
1,550,498 + Psest_1440 0.18 -0.4
1,550,499 - Psest_1440 0.18 -0.3
1,550,499 - Psest_1440 0.18 +1.9
1,550,522 + Psest_1440 0.21 -1.5
1,550,522 + Psest_1440 0.21 -0.7
1,550,522 + Psest_1440 0.21 -0.3
1,550,522 + Psest_1440 0.21 +0.1
1,550,523 - Psest_1440 0.21 -0.8
1,550,601 + Psest_1440 0.30 -0.8
1,550,601 + Psest_1440 0.30 +2.5
1,550,604 - Psest_1440 0.31 +1.4
1,550,604 - Psest_1440 0.31 -1.0
1,550,714 + Psest_1440 0.44 -0.9
1,550,714 + Psest_1440 0.44 +0.4
1,550,714 + Psest_1440 0.44 -0.1
1,550,714 + Psest_1440 0.44 +0.5
1,550,714 + Psest_1440 0.44 +0.7
1,550,714 + Psest_1440 0.44 -1.3
1,550,714 + Psest_1440 0.44 +0.9
1,550,714 + Psest_1440 0.44 +1.1
1,550,714 + Psest_1440 0.44 +0.2
1,550,714 + Psest_1440 0.44 +0.5
1,550,714 + Psest_1440 0.44 -1.0
1,550,715 - Psest_1440 0.44 -0.9
1,550,715 - Psest_1440 0.44 -0.9
1,550,715 - Psest_1440 0.44 +0.2
1,550,715 - Psest_1440 0.44 +0.9
1,550,715 - Psest_1440 0.44 -2.9
1,550,715 - Psest_1440 0.44 +0.4
1,550,777 + Psest_1440 0.52 -1.3
1,550,777 + Psest_1440 0.52 +0.3
1,550,777 + Psest_1440 0.52 +0.4
1,550,777 + Psest_1440 0.52 +0.3
1,550,777 + Psest_1440 0.52 +0.4
1,550,777 + Psest_1440 0.52 +0.8
1,550,777 + Psest_1440 0.52 -0.1
1,550,778 - Psest_1440 0.52 -0.7
1,550,778 - Psest_1440 0.52 +1.4
1,550,822 + Psest_1440 0.57 -0.8
1,550,822 + Psest_1440 0.57 +0.4
1,550,822 + Psest_1440 0.57 -0.6
1,550,918 + Psest_1440 0.69 +0.2
1,550,918 + Psest_1440 0.69 +1.2
1,550,918 + Psest_1440 0.69 +0.7
1,550,918 + Psest_1440 0.69 +1.2
1,550,918 + Psest_1440 0.69 +0.6
1,550,918 + Psest_1440 0.69 -1.1
1,550,918 + Psest_1440 0.69 -1.1
1,550,918 + Psest_1440 0.69 +0.2
1,550,918 + Psest_1440 0.69 +0.3
1,550,918 + Psest_1440 0.69 +2.2
1,550,918 + Psest_1440 0.69 -1.2
1,550,918 + Psest_1440 0.69 +0.4
1,550,919 - Psest_1440 0.69 -0.3
1,550,919 - Psest_1440 0.69 +0.1
1,550,919 - Psest_1440 0.69 -0.4
1,550,919 - Psest_1440 0.69 -1.1
1,550,951 + Psest_1440 0.73 -1.6
1,550,951 + Psest_1440 0.73 +1.3
1,550,951 + Psest_1440 0.73 -0.3
1,550,951 + Psest_1440 0.73 +1.2
1,550,952 - Psest_1440 0.73 -0.8
1,551,050 + Psest_1440 0.85 -0.0
1,551,050 + Psest_1440 0.85 +0.6
1,551,050 + Psest_1440 0.85 +0.5
1,551,050 + Psest_1440 0.85 +0.9
1,551,051 - Psest_1440 0.86 -1.2
1,551,051 - Psest_1440 0.86 +1.4
1,551,051 - Psest_1440 0.86 +1.0
1,551,062 + Psest_1440 0.87 -2.1
1,551,063 - Psest_1440 0.87 -1.4
1,551,069 - Psest_1440 0.88 -0.4
1,551,069 - Psest_1440 0.88 +0.3
1,551,069 - Psest_1440 0.88 +0.2
1,551,183 + -1.1
1,551,205 + -1.8
1,551,205 + -0.8
1,551,205 + -0.2
1,551,205 + +3.7
1,551,205 + -0.4
1,551,205 + -2.0
1,551,205 + -0.7
1,551,205 + +0.1
1,551,205 + -0.1
1,551,205 + +1.5
1,551,205 + -1.5
1,551,205 + +0.5
1,551,205 + -1.0
1,551,205 + +0.8
1,551,206 - -1.5
1,551,206 - +0.6
1,551,537 + +0.4
1,551,537 + -0.5
1,551,537 + +0.4
1,551,537 + -0.8
1,551,538 - +2.0
1,551,538 - -0.7
1,551,585 + +0.5
1,551,585 + +1.4
1,551,585 + -1.2
1,551,585 + -0.7
1,551,585 + -1.1
1,551,585 + -0.7
1,551,586 - +2.3
1,551,586 - +0.9
1,551,586 - -1.3
1,551,586 - +0.4
1,551,586 - -0.0
1,551,586 - +2.7
1,551,653 + +0.0
1,551,653 + -0.2
1,551,653 + -1.2
1,551,654 - +1.1
1,551,654 - -0.5
1,551,771 + Psest_1441 0.18 +0.8
1,551,771 + Psest_1441 0.18 +0.6
1,551,771 + Psest_1441 0.18 +0.9
1,551,772 - Psest_1441 0.18 +1.5
1,551,894 + Psest_1441 0.28 -0.4
1,551,894 + Psest_1441 0.28 +1.8
1,551,894 + Psest_1441 0.28 -0.2
1,551,894 + Psest_1441 0.28 -0.7
1,552,104 + Psest_1441 0.44 +0.3
1,552,104 + Psest_1441 0.44 +1.7
1,552,104 + Psest_1441 0.44 +0.2
1,552,104 + Psest_1441 0.44 +0.5
1,552,105 - Psest_1441 0.44 -0.0
1,552,105 - Psest_1441 0.44 +0.1
1,552,105 - Psest_1441 0.44 -0.4
1,552,105 - Psest_1441 0.44 +0.1
1,552,125 + Psest_1441 0.46 -0.3
1,552,125 + Psest_1441 0.46 -0.3
1,552,125 + Psest_1441 0.46 +0.8
1,552,125 + Psest_1441 0.46 -1.2
1,552,125 + Psest_1441 0.46 -0.3
1,552,125 + Psest_1441 0.46 -0.7
1,552,125 + Psest_1441 0.46 -0.4
1,552,125 + Psest_1441 0.46 -0.8
1,552,125 + Psest_1441 0.46 -0.3
1,552,125 + Psest_1441 0.46 +0.8
1,552,126 - Psest_1441 0.46 -1.7
1,552,126 - Psest_1441 0.46 +0.1
1,552,126 - Psest_1441 0.46 -0.2
1,552,126 - Psest_1441 0.46 -0.8
1,552,126 - Psest_1441 0.46 +0.4

Or see this region's nucleotide sequence