Experiment: Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0779 and Psest_0780 overlap by 1 nucleotides Psest_0780 and Psest_0781 are separated by 227 nucleotides Psest_0781 and Psest_0782 are separated by 250 nucleotides
Psest_0779: Psest_0779 - tyrosine aminotransferase (EC 2.6.1.57) <small>(from data)</small>, at 847,835 to 849,031
_0779
Psest_0780: Psest_0780 - Pterin-4a-carbinolamine dehydratase, at 849,031 to 849,387
_0780
Psest_0781: Psest_0781 - phenylalanine-4-hydroxylase, monomeric form, at 849,615 to 850,400
_0781
Psest_0782: Psest_0782 - Transcriptional regulator of aromatic amino acids metabolism, at 850,651 to 852,210
_0782
Position (kb) 849
850
851 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 848.835 kb on + strand, within Psest_0779 at 848.835 kb on + strand, within Psest_0779 at 848.836 kb on - strand, within Psest_0779 at 849.032 kb on + strand at 849.032 kb on + strand at 849.032 kb on + strand at 849.033 kb on - strand at 849.422 kb on + strand at 849.423 kb on - strand at 849.423 kb on - strand at 849.423 kb on - strand at 849.458 kb on - strand at 849.480 kb on + strand at 849.480 kb on + strand at 849.481 kb on - strand at 849.524 kb on + strand at 849.524 kb on + strand at 849.524 kb on + strand at 849.524 kb on + strand at 849.524 kb on + strand at 849.525 kb on - strand at 849.525 kb on - strand at 849.616 kb on + strand at 849.736 kb on + strand, within Psest_0781 at 849.736 kb on + strand, within Psest_0781 at 849.736 kb on + strand, within Psest_0781 at 849.736 kb on + strand, within Psest_0781 at 849.736 kb on + strand, within Psest_0781 at 849.737 kb on - strand, within Psest_0781 at 849.737 kb on - strand, within Psest_0781 at 849.737 kb on - strand, within Psest_0781 at 849.737 kb on - strand, within Psest_0781 at 849.764 kb on - strand, within Psest_0781 at 849.826 kb on + strand, within Psest_0781 at 849.826 kb on + strand, within Psest_0781 at 849.826 kb on + strand, within Psest_0781 at 849.826 kb on + strand, within Psest_0781 at 849.827 kb on - strand, within Psest_0781 at 849.827 kb on - strand, within Psest_0781 at 849.865 kb on + strand, within Psest_0781 at 849.865 kb on + strand, within Psest_0781 at 849.934 kb on + strand, within Psest_0781 at 849.934 kb on + strand, within Psest_0781 at 849.935 kb on - strand, within Psest_0781 at 849.935 kb on - strand, within Psest_0781 at 849.935 kb on - strand, within Psest_0781 at 849.977 kb on - strand, within Psest_0781 at 850.063 kb on + strand, within Psest_0781 at 850.063 kb on + strand, within Psest_0781 at 850.063 kb on + strand, within Psest_0781 at 850.089 kb on - strand, within Psest_0781 at 850.264 kb on + strand, within Psest_0781 at 850.264 kb on + strand, within Psest_0781 at 850.265 kb on - strand, within Psest_0781 at 850.380 kb on + strand at 850.380 kb on + strand at 850.404 kb on + strand at 850.457 kb on + strand at 850.457 kb on + strand at 850.458 kb on - strand at 850.458 kb on - strand at 850.458 kb on - strand at 850.568 kb on + strand at 850.580 kb on - strand at 850.656 kb on + strand at 850.656 kb on + strand at 850.720 kb on + strand at 850.774 kb on + strand at 850.774 kb on + strand at 850.774 kb on + strand at 850.774 kb on + strand at 850.775 kb on - strand at 850.775 kb on - strand at 850.775 kb on - strand at 850.947 kb on + strand, within Psest_0782 at 851.190 kb on - strand, within Psest_0782 at 851.231 kb on - strand, within Psest_0782 at 851.231 kb on - strand, within Psest_0782
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.016 mg/ml remove 848,835 + Psest_0779 0.84 -2.8 848,835 + Psest_0779 0.84 +2.5 848,836 - Psest_0779 0.84 +1.2 849,032 + +2.4 849,032 + +0.4 849,032 + +0.0 849,033 - -0.6 849,422 + +1.0 849,423 - +2.1 849,423 - -1.7 849,423 - +0.2 849,458 - -0.0 849,480 + +0.9 849,480 + -0.7 849,481 - -0.8 849,524 + -0.8 849,524 + +2.0 849,524 + -0.6 849,524 + -0.6 849,524 + +0.6 849,525 - -0.8 849,525 - +3.4 849,616 + -0.9 849,736 + Psest_0781 0.15 -1.0 849,736 + Psest_0781 0.15 -1.5 849,736 + Psest_0781 0.15 -0.6 849,736 + Psest_0781 0.15 -0.1 849,736 + Psest_0781 0.15 -0.9 849,737 - Psest_0781 0.16 +0.1 849,737 - Psest_0781 0.16 -0.3 849,737 - Psest_0781 0.16 -2.3 849,737 - Psest_0781 0.16 +0.4 849,764 - Psest_0781 0.19 +2.4 849,826 + Psest_0781 0.27 -0.9 849,826 + Psest_0781 0.27 -0.7 849,826 + Psest_0781 0.27 -0.2 849,826 + Psest_0781 0.27 -1.0 849,827 - Psest_0781 0.27 +1.1 849,827 - Psest_0781 0.27 -1.4 849,865 + Psest_0781 0.32 -1.3 849,865 + Psest_0781 0.32 +0.3 849,934 + Psest_0781 0.41 -1.6 849,934 + Psest_0781 0.41 -0.1 849,935 - Psest_0781 0.41 -2.0 849,935 - Psest_0781 0.41 -0.8 849,935 - Psest_0781 0.41 -0.6 849,977 - Psest_0781 0.46 -1.1 850,063 + Psest_0781 0.57 -0.4 850,063 + Psest_0781 0.57 -0.3 850,063 + Psest_0781 0.57 -1.3 850,089 - Psest_0781 0.60 -0.0 850,264 + Psest_0781 0.83 -0.1 850,264 + Psest_0781 0.83 -0.4 850,265 - Psest_0781 0.83 +0.7 850,380 + -1.1 850,380 + +0.1 850,404 + -1.0 850,457 + -1.9 850,457 + -0.2 850,458 - -0.4 850,458 - +0.6 850,458 - +0.2 850,568 + +1.7 850,580 - +0.7 850,656 + -0.4 850,656 + -0.0 850,720 + -1.3 850,774 + +2.3 850,774 + -0.9 850,774 + +1.0 850,774 + -1.6 850,775 - -0.3 850,775 - -2.7 850,775 - -0.7 850,947 + Psest_0782 0.19 -0.1 851,190 - Psest_0782 0.35 -0.7 851,231 - Psest_0782 0.37 +1.1 851,231 - Psest_0782 0.37 -0.4
Or see this region's nucleotide sequence